Wall clock time and date at job start Tue Mar 31 2020 03:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.46503 * 120.00173 * 84.99744 * 3 2 1 5 5 C 1.50698 * 109.46677 * 85.00071 * 4 3 2 6 6 H 1.07996 * 120.00572 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99579 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99973 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99897 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47125 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46972 * 119.99856 * 9 7 5 12 12 H 1.48500 * 109.47166 * 239.99828 * 9 7 5 13 13 S 1.65597 * 120.00032 * 265.00099 * 3 2 1 14 14 O 1.42104 * 106.40474 * 203.53866 * 13 3 2 15 15 O 1.42097 * 106.40414 * 336.45916 * 13 3 2 16 16 N 1.65604 * 107.22116 * 89.99643 * 13 3 2 17 17 C 1.46505 * 119.99371 * 65.00051 * 16 13 3 18 18 H 1.08990 * 108.83508 * 24.30414 * 17 16 13 19 19 C 1.52336 * 108.86488 * 142.83303 * 17 16 13 20 20 C 1.54262 * 112.59035 * 120.81802 * 19 17 16 21 21 S 1.83953 * 102.57853 * 24.52411 * 20 19 17 22 22 C 1.54253 * 108.86728 * 265.76596 * 17 16 13 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00226 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00054 * 1 2 3 26 26 H 1.09000 * 109.47050 * 119.99945 * 2 1 3 27 27 H 1.09001 * 109.46801 * 240.00058 * 2 1 3 28 28 H 1.08997 * 109.47379 * 205.00291 * 4 3 2 29 29 H 1.09003 * 109.46997 * 325.00062 * 4 3 2 30 30 H 0.97007 * 119.99699 * 180.02562 * 8 7 5 31 31 H 0.96996 * 120.00557 * 245.00070 * 16 13 3 32 32 H 1.09002 * 108.86798 * 241.63739 * 19 17 16 33 33 H 1.08998 * 108.86889 * 0.14111 * 19 17 16 34 34 H 1.09000 * 110.79036 * 142.79810 * 20 19 17 35 35 H 1.09000 * 110.78422 * 266.25765 * 20 19 17 36 36 H 1.09004 * 110.79058 * 332.93019 * 22 17 16 37 37 H 1.09003 * 110.78680 * 96.38655 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1088 1.2639 5 6 3.4948 1.7889 1.8823 6 1 4.1720 1.1112 1.3840 7 6 3.8524 2.3607 3.0848 8 7 3.0275 3.1856 3.6919 9 14 5.5088 1.9637 3.8518 10 1 6.2448 1.0158 2.9772 11 1 6.2970 3.2133 4.0020 12 1 5.3012 1.3460 5.1861 13 16 2.4122 2.1202 -1.4286 14 8 3.3284 3.1571 -1.1049 15 8 2.7096 1.0800 -2.3499 16 7 1.0431 2.8642 -1.9895 17 6 0.4513 3.9730 -1.2367 18 1 1.2262 4.4377 -0.6272 19 6 -0.0865 5.0045 -2.2203 20 6 -1.6005 5.2490 -2.0538 21 16 -1.8945 4.7644 -0.3038 22 6 -0.6467 3.4154 -0.3078 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.0921 3.1803 1.0756 29 1 1.3617 1.8098 1.9453 30 1 3.2793 3.5882 4.5378 31 1 0.6330 2.5658 -2.8163 32 1 0.4414 5.9459 -2.0676 33 1 0.1026 4.6557 -3.2355 34 1 -1.8421 6.3003 -2.2100 35 1 -2.1716 4.6148 -2.7319 36 1 -1.0699 2.4977 -0.7164 37 1 -0.2563 3.2491 0.6962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337075199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:36 Heat of formation + Delta-G solvation = -104.331543 kcal Electronic energy + Delta-G solvation = -21156.877577 eV Core-core repulsion = 17992.990705 eV Total energy + Delta-G solvation = -3163.886872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.71425 -38.18680 -37.61728 -36.87423 -34.70504 -33.16817 -31.53383 -29.93535 -28.48014 -25.83145 -24.92046 -23.25107 -21.75542 -20.53705 -19.16950 -18.38649 -18.24550 -17.80390 -17.23805 -16.66007 -16.25872 -15.86027 -15.35969 -15.18282 -14.81334 -14.68016 -14.33407 -13.88877 -13.61329 -13.56073 -13.36409 -13.20894 -13.14499 -13.03548 -12.89527 -12.75186 -12.64920 -12.36453 -12.20077 -12.16771 -11.97057 -11.70324 -11.66286 -11.17269 -10.59114 -10.49366 -9.79689 -8.74008 -8.19516 -6.30428 -0.35442 0.88003 1.34114 1.37764 1.40534 1.51471 2.02519 2.40388 2.63123 3.11831 3.36664 3.47311 3.79682 3.83240 3.93652 4.09219 4.21134 4.31908 4.47908 4.51484 4.59256 4.66314 4.76637 4.83614 5.05184 5.07848 5.12162 5.17149 5.20807 5.42592 5.53944 5.72854 5.89972 6.12960 6.16282 6.78135 7.38379 8.87519 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.006296 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.909808 B = 4445.940887 C = 5038.801671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 N -0.994 5.994 4 C 0.279 3.721 5 C -0.548 4.548 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.272 1.272 13 S 2.792 3.208 14 O -1.010 7.010 15 O -1.008 7.008 16 N -1.105 6.105 17 C 0.149 3.851 18 H 0.077 0.923 19 C -0.129 4.129 20 C -0.048 4.048 21 S -0.339 6.339 22 C -0.076 4.076 23 H 0.085 0.915 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.017 0.983 29 H 0.028 0.972 30 H 0.266 0.734 31 H 0.428 0.572 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.328 0.056 -12.711 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.836 5.836 4 C 0.155 3.845 5 C -0.588 4.588 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.560 5.560 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.197 1.197 13 S 2.801 3.199 14 O -0.993 6.993 15 O -0.992 6.992 16 N -0.868 5.868 17 C 0.040 3.960 18 H 0.095 0.905 19 C -0.169 4.169 20 C -0.195 4.195 21 S -0.114 6.114 22 C -0.226 4.226 23 H 0.104 0.896 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.265 0.735 32 H 0.109 0.891 33 H 0.129 0.871 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.151 0.643 -11.949 16.357 hybrid contribution 1.301 -0.609 0.038 1.437 sum -9.850 0.034 -11.911 15.457 Atomic orbital electron populations 1.22228 0.94491 1.03372 1.02130 1.21360 0.95346 0.81377 1.03420 1.57562 1.81525 1.22688 1.21795 1.18542 0.95536 0.90183 0.80246 1.21878 1.03489 1.27469 1.05928 0.93157 1.25679 1.00560 0.94818 0.97498 1.70006 1.37486 1.30947 1.17603 0.85599 0.80046 0.78125 0.78483 1.19557 1.20648 1.19679 1.01368 0.73767 0.72499 0.72300 1.93578 1.61951 1.59200 1.84553 1.93512 1.84159 1.57781 1.63782 1.56005 1.48133 1.46597 1.36111 1.21498 0.95755 0.86577 0.92191 0.90498 1.22254 0.94870 0.99298 1.00463 1.24269 0.97200 1.06671 0.91384 1.88280 1.55313 1.45889 1.21909 1.24795 0.95163 0.99147 1.03475 0.89573 0.92966 0.91784 0.90885 0.89721 0.96492 0.95414 0.92491 0.73512 0.89137 0.87080 0.85676 0.86875 0.86676 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.10 71.98 0.73 -3.26 16 2 C 0.11 3.54 6.40 86.38 0.55 4.09 16 3 N -0.99 -38.74 2.82 -519.83 -1.47 -40.21 16 4 C 0.28 13.48 4.37 85.63 0.37 13.85 16 5 C -0.55 -30.56 9.38 25.60 0.24 -30.32 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 7 C 0.01 0.80 5.46 84.65 0.46 1.26 16 8 N -0.92 -53.42 13.29 21.45 0.28 -53.14 16 9 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 S 2.79 103.93 6.07 -56.49 -0.34 103.59 16 14 O -1.01 -47.47 16.42 -128.00 -2.10 -49.58 16 15 O -1.01 -39.05 16.69 -128.00 -2.14 -41.18 16 16 N -1.11 -27.95 5.31 -168.53 -0.90 -28.85 16 17 C 0.15 3.85 3.28 45.20 0.15 4.00 16 18 H 0.08 2.54 7.02 -2.39 -0.02 2.52 16 19 C -0.13 -2.27 6.09 30.80 0.19 -2.08 16 20 C -0.05 -0.72 7.46 72.41 0.54 -0.18 16 21 S -0.34 -8.50 23.26 -56.49 -1.31 -9.81 16 22 C -0.08 -2.00 7.09 72.41 0.51 -1.48 16 23 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.34 7.11 -2.39 -0.02 1.32 16 26 H 0.07 2.50 8.11 -2.39 -0.02 2.48 16 27 H 0.08 2.56 6.91 -2.39 -0.02 2.54 16 28 H 0.02 0.89 7.14 -2.39 -0.02 0.87 16 29 H 0.03 1.38 8.11 -2.39 -0.02 1.36 16 30 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 31 H 0.43 7.63 8.59 -96.74 -0.83 6.80 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.11 1.42 7.58 -2.39 -0.02 1.40 16 34 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 2.56 6.87 -2.38 -0.02 2.54 16 37 H 0.09 2.95 7.35 -2.39 -0.02 2.93 16 Total: -1.00 -71.50 325.99 -1.96 -73.46 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.24 Total: 13.17 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 3.75 Total: -14.13 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -2.08 Total: -122.20 kcal Atomic # 8 Polarization: -86.52 SS G_CDS: -4.24 Total: -90.76 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 95.44 SS G_CDS: -1.66 Total: 93.78 kcal Total: -71.50 -1.96 -73.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337075199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.868 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds