Wall clock time and date at job start Tue Mar 31 2020 04:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46490 * 109.47629 * 2 1 4 4 C 1.46504 * 120.00401 * 275.00527 * 3 2 1 5 5 C 1.50699 * 109.46486 * 274.99837 * 4 3 2 6 6 H 1.07995 * 120.00876 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99629 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99807 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99848 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47681 * 89.99875 * 9 7 5 11 11 H 1.48507 * 109.46851 * 209.99643 * 9 7 5 12 12 H 1.48502 * 109.47349 * 329.99172 * 9 7 5 13 13 S 1.65604 * 119.99946 * 95.00057 * 3 2 1 14 14 O 1.42104 * 106.40032 * 156.46415 * 13 3 2 15 15 O 1.42095 * 106.40146 * 23.53877 * 13 3 2 16 16 N 1.65606 * 107.21628 * 270.00248 * 13 3 2 17 17 C 1.47018 * 125.64862 * 90.00116 * 16 13 3 18 18 C 1.54325 * 107.40412 * 178.82599 * 17 16 13 19 19 H 1.09000 * 110.72188 * 96.24097 * 18 17 16 20 20 O 1.42893 * 110.72271 * 219.52456 * 18 17 16 21 21 C 1.55405 * 102.82616 * 337.97548 * 18 17 16 22 22 H 1.09001 * 111.03900 * 153.47018 * 21 18 17 23 23 O 1.42894 * 110.92636 * 277.25367 * 21 18 17 24 24 C 1.47426 * 125.64620 * 269.95524 * 16 13 3 25 25 H 1.09005 * 109.46934 * 59.99489 * 1 2 3 26 26 H 1.08998 * 109.47769 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46891 * 300.00169 * 1 2 3 28 28 H 1.09002 * 109.46555 * 239.99785 * 2 1 3 29 29 H 1.09005 * 109.46934 * 120.00511 * 2 1 3 30 30 H 1.08995 * 109.46850 * 34.99264 * 4 3 2 31 31 H 1.08995 * 109.47623 * 154.99508 * 4 3 2 32 32 H 0.97002 * 120.00121 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.88241 * 298.32128 * 17 16 13 34 34 H 1.09000 * 109.88049 * 59.33257 * 17 16 13 35 35 H 0.96708 * 113.99585 * 298.54470 * 20 18 17 36 36 H 0.96704 * 114.00274 * 173.70737 * 23 21 18 37 37 H 1.08999 * 110.36956 * 323.00938 * 24 16 13 38 38 H 1.09001 * 110.36709 * 85.22132 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1724 1.1115 -1.3836 7 6 3.8526 2.3605 -3.0848 8 7 5.0192 2.0817 -3.6243 9 14 2.6810 3.5324 -3.9470 10 1 2.9454 4.9209 -3.4919 11 1 2.8854 3.4454 -5.4154 12 1 1.2806 3.1623 -3.6195 13 16 2.4123 2.1200 1.4287 14 8 3.3286 3.1569 1.1049 15 8 2.7096 1.0797 2.3499 16 7 1.0433 2.8641 1.9895 17 6 0.0391 2.2563 2.8747 18 6 -1.0376 3.3259 3.1545 19 1 -1.8846 3.2065 2.4789 20 8 -1.4640 3.2698 4.5172 21 6 -0.2868 4.6553 2.8642 22 1 -0.9818 5.4399 2.5648 23 8 0.4853 5.0629 3.9954 24 6 0.6301 4.2460 1.6845 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3618 1.8097 -1.9452 31 1 2.0923 3.1802 -1.0756 32 1 5.2708 2.4836 -4.4705 33 1 -0.4135 1.3940 2.3850 34 1 0.5071 1.9481 3.8096 35 1 -1.8685 2.4281 4.7683 36 1 1.0463 5.8334 3.8317 37 1 1.5006 4.9003 1.6358 38 1 0.0790 4.2785 0.7446 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337161866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:52 Heat of formation + Delta-G solvation = -156.280461 kcal Electronic energy + Delta-G solvation = -23618.470459 eV Core-core repulsion = 20009.578042 eV Total energy + Delta-G solvation = -3608.892417 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.45205 -36.78649 -36.23563 -36.10298 -35.27058 -35.22033 -32.63667 -30.36343 -29.34836 -28.46144 -27.19180 -22.99389 -22.85089 -21.58482 -21.21736 -18.74260 -17.96368 -17.64328 -17.01766 -16.92718 -16.69212 -15.71247 -15.33836 -14.89468 -14.52907 -14.19210 -14.04076 -13.65058 -13.55092 -13.21486 -12.81734 -12.61976 -12.49292 -12.18787 -12.03503 -11.87073 -11.73149 -11.53095 -11.47572 -11.18631 -11.06222 -10.94569 -10.53970 -10.43032 -10.36843 -10.23541 -10.16831 -9.59328 -8.95388 -8.63156 -8.19635 -6.11737 -4.11233 0.99200 3.21829 3.26679 3.27344 3.32714 3.84634 3.89181 3.99353 4.28583 4.33950 4.34674 4.84279 4.92081 5.04632 5.10381 5.19111 5.30146 5.41178 5.50041 5.54573 5.58490 5.63563 5.76915 5.84954 6.07244 6.14406 6.30504 6.44218 6.48722 6.69361 7.04598 7.34353 7.36114 7.53911 7.55409 8.45333 8.93328 9.46923 11.01886 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.005794 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.540733 B = 4831.387428 C = 5165.595665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.115 3.885 3 N -0.985 5.985 4 C 0.229 3.771 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.894 5.894 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.793 3.207 14 O -0.956 6.956 15 O -0.986 6.986 16 N -1.014 6.014 17 C 0.090 3.910 18 C 0.104 3.896 19 H 0.085 0.915 20 O -0.543 6.543 21 C 0.104 3.896 22 H 0.081 0.919 23 O -0.541 6.541 24 C 0.084 3.916 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.377 0.623 36 H 0.378 0.622 37 H 0.092 0.908 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.175 2.138 10.651 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.011 4.011 3 N -0.825 5.825 4 C 0.106 3.894 5 C -0.571 4.571 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.190 1.190 13 S 2.803 3.197 14 O -0.940 6.940 15 O -0.970 6.970 16 N -0.853 5.853 17 C -0.036 4.036 18 C 0.043 3.957 19 H 0.102 0.898 20 O -0.347 6.347 21 C 0.043 3.957 22 H 0.099 0.901 23 O -0.346 6.346 24 C -0.042 4.042 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.224 0.776 36 H 0.226 0.774 37 H 0.110 0.890 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.178 2.232 11.153 18.967 hybrid contribution -0.753 0.473 -1.272 1.552 sum -15.931 2.705 9.881 18.941 Atomic orbital electron populations 1.22334 0.97329 1.01659 1.01840 1.21191 0.92921 0.82933 1.04079 1.57610 1.81011 1.21463 1.22445 1.19401 0.98272 0.90795 0.80981 1.21370 1.00835 1.29009 1.05897 0.90418 1.24871 0.95064 0.96071 0.96929 1.69895 1.20507 1.43952 1.18871 0.86926 0.81754 0.82188 0.79260 1.19824 1.20927 1.19011 1.01710 0.72410 0.73019 0.72597 1.93627 1.58353 1.57907 1.84063 1.93528 1.82769 1.57487 1.63206 1.59268 1.41760 1.22204 1.62094 1.22444 0.90022 0.96047 0.95077 1.22984 0.94603 0.93721 0.84396 0.89770 1.86655 1.81601 1.40213 1.26212 1.23018 0.91802 0.95006 0.85913 0.90142 1.86609 1.60752 1.51990 1.35255 1.22793 0.99802 0.83600 0.98051 0.92090 0.91915 0.93317 0.89294 0.90282 0.94903 0.95582 0.92489 0.91310 0.90163 0.77566 0.77429 0.88951 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.12 1.92 6.40 -4.05 -0.03 1.89 16 3 N -0.98 -19.59 2.82 -115.67 -0.33 -19.92 16 4 C 0.23 5.24 4.17 -5.19 -0.02 5.22 16 5 C -0.53 -14.97 9.94 -34.44 -0.34 -15.32 16 6 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.89 -27.28 13.96 55.43 0.77 -26.51 16 9 Si 0.87 20.64 27.47 -169.99 -4.67 15.97 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.27 -5.77 6.54 56.52 0.37 -5.40 16 13 S 2.79 55.43 6.31 -107.50 -0.68 54.76 16 14 O -0.96 -22.62 16.43 -57.17 -0.94 -23.56 16 15 O -0.99 -20.93 16.27 -57.17 -0.93 -21.86 16 16 N -1.01 -15.10 3.76 -111.42 -0.42 -15.52 16 17 C 0.09 1.09 6.75 -3.07 -0.02 1.07 16 18 C 0.10 1.03 4.22 -24.76 -0.10 0.92 16 19 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 20 O -0.54 -5.57 12.95 -52.29 -0.68 -6.25 16 21 C 0.10 1.09 4.31 -24.44 -0.11 0.98 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 23 O -0.54 -6.54 13.02 -52.29 -0.68 -7.22 16 24 C 0.08 1.03 6.84 -2.53 -0.02 1.01 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.55 5.64 -51.92 -0.29 0.26 16 28 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 29 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 30 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16 31 H 0.03 0.59 7.04 -51.93 -0.37 0.23 16 32 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.07 0.70 5.64 -51.93 -0.29 0.41 16 34 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 35 H 0.38 2.10 9.11 45.56 0.42 2.52 16 36 H 0.38 3.05 9.11 45.56 0.42 3.46 16 37 H 0.09 1.18 7.78 -51.93 -0.40 0.77 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -37.79 323.71 -7.82 -45.61 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.80 Total: 3.64 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -0.35 Total: -4.03 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.03 Total: -61.94 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -3.23 Total: -58.89 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 16 Polarization: 55.43 SS G_CDS: -0.68 Total: 54.76 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.79 -7.82 -45.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337161866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.670 kcal (2) G-P(sol) polarization free energy of solvation -37.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds