Wall clock time and date at job start Tue Mar 31 2020 04:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46490 * 109.47629 * 2 1 4 4 C 1.46504 * 120.00401 * 275.00527 * 3 2 1 5 5 C 1.50699 * 109.46486 * 274.99837 * 4 3 2 6 6 H 1.07995 * 120.00876 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99629 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99807 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99848 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47681 * 89.99875 * 9 7 5 11 11 H 1.48507 * 109.46851 * 209.99643 * 9 7 5 12 12 H 1.48502 * 109.47349 * 329.99172 * 9 7 5 13 13 S 1.65604 * 119.99946 * 95.00057 * 3 2 1 14 14 O 1.42104 * 106.40032 * 156.46415 * 13 3 2 15 15 O 1.42095 * 106.40146 * 23.53877 * 13 3 2 16 16 N 1.65606 * 107.21628 * 270.00248 * 13 3 2 17 17 C 1.47018 * 125.64862 * 90.00116 * 16 13 3 18 18 C 1.54325 * 107.40412 * 178.82599 * 17 16 13 19 19 H 1.09000 * 110.72188 * 96.24097 * 18 17 16 20 20 O 1.42893 * 110.72271 * 219.52456 * 18 17 16 21 21 C 1.55405 * 102.82616 * 337.97548 * 18 17 16 22 22 H 1.09001 * 111.03900 * 153.47018 * 21 18 17 23 23 O 1.42894 * 110.92636 * 277.25367 * 21 18 17 24 24 C 1.47426 * 125.64620 * 269.95524 * 16 13 3 25 25 H 1.09005 * 109.46934 * 59.99489 * 1 2 3 26 26 H 1.08998 * 109.47769 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46891 * 300.00169 * 1 2 3 28 28 H 1.09002 * 109.46555 * 239.99785 * 2 1 3 29 29 H 1.09005 * 109.46934 * 120.00511 * 2 1 3 30 30 H 1.08995 * 109.46850 * 34.99264 * 4 3 2 31 31 H 1.08995 * 109.47623 * 154.99508 * 4 3 2 32 32 H 0.97002 * 120.00121 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.88241 * 298.32128 * 17 16 13 34 34 H 1.09000 * 109.88049 * 59.33257 * 17 16 13 35 35 H 0.96708 * 113.99585 * 298.54470 * 20 18 17 36 36 H 0.96704 * 114.00274 * 173.70737 * 23 21 18 37 37 H 1.08999 * 110.36956 * 323.00938 * 24 16 13 38 38 H 1.09001 * 110.36709 * 85.22132 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1724 1.1115 -1.3836 7 6 3.8526 2.3605 -3.0848 8 7 5.0192 2.0817 -3.6243 9 14 2.6810 3.5324 -3.9470 10 1 2.9454 4.9209 -3.4919 11 1 2.8854 3.4454 -5.4154 12 1 1.2806 3.1623 -3.6195 13 16 2.4123 2.1200 1.4287 14 8 3.3286 3.1569 1.1049 15 8 2.7096 1.0797 2.3499 16 7 1.0433 2.8641 1.9895 17 6 0.0391 2.2563 2.8747 18 6 -1.0376 3.3259 3.1545 19 1 -1.8846 3.2065 2.4789 20 8 -1.4640 3.2698 4.5172 21 6 -0.2868 4.6553 2.8642 22 1 -0.9818 5.4399 2.5648 23 8 0.4853 5.0629 3.9954 24 6 0.6301 4.2460 1.6845 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3618 1.8097 -1.9452 31 1 2.0923 3.1802 -1.0756 32 1 5.2708 2.4836 -4.4705 33 1 -0.4135 1.3940 2.3850 34 1 0.5071 1.9481 3.8096 35 1 -1.8685 2.4281 4.7683 36 1 1.0463 5.8334 3.8317 37 1 1.5006 4.9003 1.6358 38 1 0.0790 4.2785 0.7446 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337161866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:52 Heat of formation + Delta-G solvation = -191.714068 kcal Electronic energy + Delta-G solvation = -23620.006975 eV Core-core repulsion = 20009.578042 eV Total energy + Delta-G solvation = -3610.428934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.30112 -38.44144 -37.79237 -36.95980 -36.86565 -36.17030 -34.69476 -31.86809 -30.27924 -29.37525 -28.95164 -24.63449 -23.86917 -23.13133 -22.01076 -20.05057 -19.26382 -18.82647 -18.80005 -18.37491 -17.71693 -17.18910 -16.37897 -16.27245 -15.79255 -15.74266 -15.00267 -14.84505 -14.69808 -14.51208 -14.29859 -14.06954 -13.72622 -13.57902 -13.47118 -13.28804 -13.17856 -13.12611 -12.80798 -12.68784 -12.51701 -12.20564 -12.07298 -11.82649 -11.71410 -11.58673 -11.16464 -10.94867 -10.79028 -10.03855 -9.82231 -8.29479 -6.36049 -0.52460 1.36128 1.40880 1.49326 1.94397 2.35300 2.48954 3.02169 3.05641 3.15962 3.33864 3.49910 3.75360 3.87393 4.15994 4.25358 4.34175 4.39224 4.43706 4.55206 4.63636 4.73487 4.74717 4.84407 4.92516 4.97601 5.01719 5.08432 5.30002 5.40955 5.44867 5.48196 5.80520 6.29777 6.67003 6.80695 6.96488 7.27030 8.88377 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.005794 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.540733 B = 4831.387428 C = 5165.595665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.105 3.895 3 N -0.991 5.991 4 C 0.238 3.762 5 C -0.545 4.545 6 H 0.023 0.977 7 C 0.005 3.995 8 N -0.950 5.950 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.224 1.224 13 S 2.805 3.195 14 O -1.005 7.005 15 O -1.010 7.010 16 N -1.010 6.010 17 C 0.083 3.917 18 C 0.110 3.890 19 H 0.124 0.876 20 O -0.561 6.561 21 C 0.102 3.898 22 H 0.115 0.885 23 O -0.568 6.568 24 C 0.073 3.927 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.268 0.732 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.396 0.604 36 H 0.391 0.609 37 H 0.079 0.921 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.528 3.232 10.569 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.020 4.020 3 N -0.832 5.832 4 C 0.114 3.886 5 C -0.585 4.585 6 H 0.041 0.959 7 C -0.192 4.192 8 N -0.591 5.591 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.146 1.146 13 S 2.816 3.184 14 O -0.989 6.989 15 O -0.994 6.994 16 N -0.853 5.853 17 C -0.043 4.043 18 C 0.050 3.950 19 H 0.141 0.859 20 O -0.369 6.369 21 C 0.041 3.959 22 H 0.133 0.867 23 O -0.375 6.375 24 C -0.052 4.052 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.247 0.753 36 H 0.241 0.759 37 H 0.097 0.903 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.547 3.285 11.104 22.720 hybrid contribution 0.679 0.053 -1.115 1.307 sum -18.868 3.338 9.989 21.608 Atomic orbital electron populations 1.22249 0.93366 1.03688 1.02768 1.21423 0.96191 0.81182 1.03230 1.57538 1.81587 1.22698 1.21330 1.19175 0.95689 0.91524 0.82234 1.21715 1.02628 1.27966 1.06152 0.95862 1.25994 0.97160 0.98234 0.97851 1.70085 1.23310 1.45959 1.19698 0.85756 0.80975 0.79011 0.77544 1.19277 1.20629 1.14600 1.00945 0.72898 0.72202 0.72396 1.93556 1.61214 1.59331 1.84766 1.93483 1.83785 1.58408 1.63737 1.58752 1.41155 1.23396 1.61971 1.22742 0.89893 0.97803 0.93851 1.23120 0.94776 0.92094 0.85035 0.85906 1.86611 1.81778 1.41896 1.26594 1.23256 0.91613 0.96416 0.84579 0.86708 1.86567 1.61442 1.53008 1.36506 1.23144 1.00115 0.81584 1.00353 0.91811 0.89369 0.91631 0.90917 0.90547 0.92368 0.94765 0.92360 0.89029 0.92152 0.75340 0.75913 0.90278 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 10.24 71.98 0.74 -2.81 16 2 C 0.11 3.42 6.40 86.38 0.55 3.98 16 3 N -0.99 -39.05 2.82 -519.86 -1.47 -40.52 16 4 C 0.24 10.66 4.17 85.63 0.36 11.02 16 5 C -0.55 -31.64 9.94 25.60 0.25 -31.39 16 6 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 7 C 0.01 0.30 5.47 84.66 0.46 0.76 16 8 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 9 Si 0.95 41.64 27.47 68.60 1.88 43.53 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.22 -8.30 6.54 99.48 0.65 -7.65 16 13 S 2.80 112.14 6.31 -56.49 -0.36 111.78 16 14 O -1.00 -49.05 16.43 -128.00 -2.10 -51.15 16 15 O -1.01 -43.81 16.27 -128.00 -2.08 -45.89 16 16 N -1.01 -28.29 3.76 -506.42 -1.90 -30.19 16 17 C 0.08 1.76 6.75 86.73 0.59 2.34 16 18 C 0.11 1.73 4.22 31.87 0.13 1.86 16 19 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 20 O -0.56 -9.63 12.95 -132.67 -1.72 -11.35 16 21 C 0.10 1.78 4.31 32.08 0.14 1.92 16 22 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 23 O -0.57 -12.65 13.02 -132.67 -1.73 -14.38 16 24 C 0.07 1.60 6.84 86.86 0.59 2.19 16 25 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.20 5.64 -2.38 -0.01 1.19 16 28 H 0.07 2.56 8.11 -2.39 -0.02 2.54 16 29 H 0.08 2.49 6.91 -2.38 -0.02 2.47 16 30 H 0.06 2.33 7.17 -2.39 -0.02 2.31 16 31 H 0.03 1.49 7.04 -2.39 -0.02 1.47 16 32 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.09 1.50 5.64 -2.39 -0.01 1.49 16 34 H 0.06 1.52 8.05 -2.39 -0.02 1.50 16 35 H 0.40 3.08 9.11 -74.05 -0.67 2.41 16 36 H 0.39 5.82 9.11 -74.05 -0.67 5.15 16 37 H 0.08 1.93 7.78 -2.39 -0.02 1.91 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -86.72 323.71 -5.67 -92.39 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.31 Total: 15.83 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 3.82 Total: -10.12 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -3.07 Total: -130.63 kcal Atomic # 8 Polarization: -115.15 SS G_CDS: -7.63 Total: -122.78 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.88 Total: 43.53 kcal Atomic # 16 Polarization: 112.14 SS G_CDS: -0.36 Total: 111.78 kcal Total: -86.72 -5.67 -92.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337161866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.320 kcal (2) G-P(sol) polarization free energy of solvation -86.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds