Wall clock time and date at job start Tue Mar 31 2020 04:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46944 * 2 1 4 4 C 1.50697 * 109.46780 * 240.00312 * 2 1 3 5 5 H 1.07995 * 120.00028 * 239.99590 * 4 2 1 6 6 C 1.37879 * 120.00195 * 60.00297 * 4 2 1 7 7 N 1.31520 * 120.00035 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00005 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47320 * 59.99430 * 8 6 4 10 10 H 1.48498 * 109.47074 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47282 * 299.99452 * 8 6 4 12 12 N 1.46491 * 109.47032 * 120.00241 * 2 1 3 13 13 C 1.46502 * 120.00300 * 60.00159 * 12 2 1 14 14 S 1.65598 * 119.99879 * 239.99644 * 12 2 1 15 15 O 1.42105 * 106.40074 * 156.46442 * 14 12 2 16 16 O 1.42095 * 106.40400 * 23.54602 * 14 12 2 17 17 N 1.65601 * 107.22212 * 270.00359 * 14 12 2 18 18 C 1.47024 * 125.64545 * 269.95912 * 17 14 12 19 19 C 1.54329 * 107.26768 * 178.97363 * 18 17 14 20 20 H 1.09002 * 110.72032 * 96.17068 * 19 18 17 21 21 O 1.42896 * 110.87012 * 219.37563 * 19 18 17 22 22 C 1.55162 * 102.94140 * 337.80733 * 19 18 17 23 23 H 1.09000 * 111.00168 * 277.42785 * 22 19 18 24 24 O 1.42902 * 111.00095 * 153.61284 * 22 19 18 25 25 C 1.47422 * 125.64926 * 89.99785 * 17 14 12 26 26 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47312 * 299.99432 * 1 2 3 28 28 H 1.08999 * 109.47333 * 59.99969 * 1 2 3 29 29 H 0.96994 * 119.99955 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47096 * 269.99704 * 13 12 2 31 31 H 1.09001 * 109.46906 * 29.99973 * 13 12 2 32 32 H 1.09003 * 109.47091 * 149.99680 * 13 12 2 33 33 H 1.08998 * 109.88392 * 59.55919 * 18 17 14 34 34 H 1.08998 * 109.88292 * 298.38825 * 18 17 14 35 35 H 0.96708 * 114.00027 * 296.04552 * 21 19 18 36 36 H 0.96700 * 113.99757 * 179.97438 * 24 22 19 37 37 H 1.08998 * 110.36505 * 85.25567 * 25 17 14 38 38 H 1.09001 * 110.36334 * 322.93672 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8280 -2.5196 -4.0083 10 1 1.8268 -0.4196 -5.2204 11 1 3.8074 -1.1187 -4.0079 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 16 2.9704 0.1141 2.2861 15 8 2.8228 -0.5647 3.5258 16 8 2.6904 1.4972 2.1193 17 7 4.5438 -0.1042 1.8179 18 6 5.4214 -1.2023 2.2486 19 6 6.7787 -1.0088 1.5401 20 1 7.4814 -0.4861 2.1890 21 8 7.3178 -2.2641 1.1212 22 6 6.4087 -0.1336 0.3135 23 1 6.0241 -0.7463 -0.5019 24 8 7.5278 0.6437 -0.1173 25 6 5.2966 0.7707 0.9008 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.7081 1.1611 -3.4843 30 1 0.7376 -2.1445 1.9992 31 1 1.5295 -2.5969 0.4707 32 1 2.4629 -2.5819 1.9862 33 1 4.9862 -2.1593 1.9609 34 1 5.5587 -1.1650 3.3293 35 1 7.5308 -2.8635 1.8497 36 1 7.3446 1.2066 -0.8819 37 1 5.7355 1.6053 1.4475 38 1 4.6462 1.1367 0.1063 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337771351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:02 Heat of formation + Delta-G solvation = -161.630091 kcal Electronic energy + Delta-G solvation = -23795.071135 eV Core-core repulsion = 20185.946741 eV Total energy + Delta-G solvation = -3609.124395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.23102 -36.80336 -36.19741 -36.09092 -35.35352 -35.31858 -32.66311 -29.16137 -29.00544 -28.23948 -25.56212 -25.23801 -22.67663 -21.11130 -20.74822 -18.65886 -18.10416 -17.41998 -16.90393 -16.61964 -16.45646 -15.76192 -14.99534 -14.77744 -14.57207 -14.02110 -13.56445 -13.48712 -13.25262 -12.89226 -12.75167 -12.50432 -12.25927 -12.05283 -11.86930 -11.82818 -11.61698 -11.45191 -11.26915 -11.02625 -10.92099 -10.52159 -10.45567 -10.30654 -10.28378 -10.16973 -10.06927 -9.37500 -8.84005 -8.54389 -8.02868 -6.15594 -4.24793 1.05870 3.20905 3.26476 3.27553 3.32416 3.82566 3.96728 4.26221 4.30114 4.33712 4.87294 4.97650 5.00126 5.14534 5.29471 5.42495 5.48000 5.57937 5.78953 5.81431 6.01381 6.11588 6.14086 6.29623 6.42146 6.63280 6.82252 6.84983 7.05982 7.41954 7.49045 7.55816 7.59708 7.71446 7.98669 8.19413 8.78607 9.41937 10.89135 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.013170 B = 0.008020 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.594176 B = 3490.406928 C = 4681.423670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.528 4.528 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.988 5.988 13 C 0.107 3.893 14 S 2.794 3.206 15 O -0.992 6.992 16 O -0.973 6.973 17 N -1.012 6.012 18 C 0.095 3.905 19 C 0.104 3.896 20 H 0.080 0.920 21 O -0.553 6.553 22 C 0.101 3.899 23 H 0.089 0.911 24 O -0.558 6.558 25 C 0.097 3.903 26 H 0.033 0.967 27 H 0.012 0.988 28 H 0.093 0.907 29 H 0.265 0.735 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.380 0.620 36 H 0.386 0.614 37 H 0.074 0.926 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.994 -3.780 6.361 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.831 5.831 13 C -0.039 4.039 14 S 2.804 3.196 15 O -0.976 6.976 16 O -0.957 6.957 17 N -0.851 5.851 18 C -0.032 4.032 19 C 0.043 3.957 20 H 0.098 0.902 21 O -0.358 6.358 22 C 0.041 3.959 23 H 0.107 0.893 24 O -0.364 6.364 25 C -0.029 4.029 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.227 0.773 36 H 0.234 0.766 37 H 0.092 0.908 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.740 -3.179 6.917 11.590 hybrid contribution 0.105 -0.703 -1.157 1.358 sum 8.846 -3.882 5.759 11.247 Atomic orbital electron populations 1.22051 0.97847 0.99727 1.00787 1.18746 0.91997 0.92624 0.80225 0.92461 1.21333 1.32071 1.13198 0.90115 0.91953 1.24924 0.94922 0.94950 0.98964 1.69871 1.35982 1.22534 1.24000 0.86600 0.79161 0.79755 0.82100 1.20247 1.21231 1.20232 1.57807 1.63742 1.21541 1.39988 1.21191 0.98926 0.81929 1.01886 1.01587 0.71480 0.73452 0.73072 1.93537 1.85633 1.76414 1.41996 1.93586 1.83258 1.32072 1.86781 1.59066 1.29181 1.35973 1.60908 1.22329 0.90651 0.91030 0.99166 1.22732 0.93019 0.84902 0.95040 0.90179 1.86581 1.84828 1.27260 1.37087 1.22905 0.85503 0.91226 0.96282 0.89291 1.86428 1.36180 1.60863 1.52895 1.22572 0.94003 0.92975 0.93388 0.94826 0.96873 0.88864 0.92515 0.93768 0.90129 0.93337 0.90569 0.90767 0.77287 0.76620 0.90755 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.97 37.16 0.33 -3.05 16 2 C 0.27 6.35 2.62 -69.09 -0.18 6.17 16 3 H 0.06 1.50 6.91 -51.93 -0.36 1.15 16 4 C -0.53 -13.09 7.99 -34.44 -0.28 -13.37 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.13 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.66 11.32 55.43 0.63 -23.03 16 8 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.99 -20.23 3.12 -115.86 -0.36 -20.59 16 13 C 0.11 1.89 9.28 59.85 0.56 2.44 16 14 S 2.79 54.80 6.30 -107.50 -0.68 54.13 16 15 O -0.99 -20.11 16.79 -57.17 -0.96 -21.07 16 16 O -0.97 -21.95 16.29 -57.17 -0.93 -22.88 16 17 N -1.01 -16.53 3.76 -111.42 -0.42 -16.95 16 18 C 0.10 1.26 6.77 -3.06 -0.02 1.24 16 19 C 0.10 1.29 4.06 -24.89 -0.10 1.19 16 20 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 21 O -0.55 -6.61 13.40 -35.23 -0.47 -7.08 16 22 C 0.10 1.42 4.15 -24.58 -0.10 1.32 16 23 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 24 O -0.56 -7.20 13.47 -35.23 -0.47 -7.67 16 25 C 0.10 1.47 6.72 -2.53 -0.02 1.46 16 26 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 29 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 32 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 33 H 0.08 0.97 8.06 -51.93 -0.42 0.56 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.38 2.60 9.12 45.56 0.42 3.01 16 36 H 0.39 3.49 9.12 45.56 0.42 3.90 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -32.39 325.56 -7.59 -39.99 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -3.91 Total: 6.40 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 0.10 Total: -1.03 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.15 Total: -60.56 kcal Atomic # 8 Polarization: -55.86 SS G_CDS: -2.84 Total: -58.70 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 54.80 SS G_CDS: -0.68 Total: 54.13 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.39 -7.59 -39.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337771351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.644 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds