Wall clock time and date at job start Tue Mar 31 2020 04:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46944 * 2 1 4 4 C 1.50697 * 109.46780 * 240.00312 * 2 1 3 5 5 H 1.07995 * 120.00028 * 239.99590 * 4 2 1 6 6 C 1.37879 * 120.00195 * 60.00297 * 4 2 1 7 7 N 1.31520 * 120.00035 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00005 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47320 * 59.99430 * 8 6 4 10 10 H 1.48498 * 109.47074 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47282 * 299.99452 * 8 6 4 12 12 N 1.46491 * 109.47032 * 120.00241 * 2 1 3 13 13 C 1.46502 * 120.00300 * 60.00159 * 12 2 1 14 14 S 1.65598 * 119.99879 * 239.99644 * 12 2 1 15 15 O 1.42105 * 106.40074 * 156.46442 * 14 12 2 16 16 O 1.42095 * 106.40400 * 23.54602 * 14 12 2 17 17 N 1.65601 * 107.22212 * 270.00359 * 14 12 2 18 18 C 1.47024 * 125.64545 * 269.95912 * 17 14 12 19 19 C 1.54329 * 107.26768 * 178.97363 * 18 17 14 20 20 H 1.09002 * 110.72032 * 96.17068 * 19 18 17 21 21 O 1.42896 * 110.87012 * 219.37563 * 19 18 17 22 22 C 1.55162 * 102.94140 * 337.80733 * 19 18 17 23 23 H 1.09000 * 111.00168 * 277.42785 * 22 19 18 24 24 O 1.42902 * 111.00095 * 153.61284 * 22 19 18 25 25 C 1.47422 * 125.64926 * 89.99785 * 17 14 12 26 26 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47312 * 299.99432 * 1 2 3 28 28 H 1.08999 * 109.47333 * 59.99969 * 1 2 3 29 29 H 0.96994 * 119.99955 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47096 * 269.99704 * 13 12 2 31 31 H 1.09001 * 109.46906 * 29.99973 * 13 12 2 32 32 H 1.09003 * 109.47091 * 149.99680 * 13 12 2 33 33 H 1.08998 * 109.88392 * 59.55919 * 18 17 14 34 34 H 1.08998 * 109.88292 * 298.38825 * 18 17 14 35 35 H 0.96708 * 114.00027 * 296.04552 * 21 19 18 36 36 H 0.96700 * 113.99757 * 179.97438 * 24 22 19 37 37 H 1.08998 * 110.36505 * 85.25567 * 25 17 14 38 38 H 1.09001 * 110.36334 * 322.93672 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8280 -2.5196 -4.0083 10 1 1.8268 -0.4196 -5.2204 11 1 3.8074 -1.1187 -4.0079 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 16 2.9704 0.1141 2.2861 15 8 2.8228 -0.5647 3.5258 16 8 2.6904 1.4972 2.1193 17 7 4.5438 -0.1042 1.8179 18 6 5.4214 -1.2023 2.2486 19 6 6.7787 -1.0088 1.5401 20 1 7.4814 -0.4861 2.1890 21 8 7.3178 -2.2641 1.1212 22 6 6.4087 -0.1336 0.3135 23 1 6.0241 -0.7463 -0.5019 24 8 7.5278 0.6437 -0.1173 25 6 5.2966 0.7707 0.9008 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.7081 1.1611 -3.4843 30 1 0.7376 -2.1445 1.9992 31 1 1.5295 -2.5969 0.4707 32 1 2.4629 -2.5819 1.9862 33 1 4.9862 -2.1593 1.9609 34 1 5.5587 -1.1650 3.3293 35 1 7.5308 -2.8635 1.8497 36 1 7.3446 1.2066 -0.8819 37 1 5.7355 1.6053 1.4475 38 1 4.6462 1.1367 0.1063 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337771351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:01 Heat of formation + Delta-G solvation = -191.152763 kcal Electronic energy + Delta-G solvation = -23796.351335 eV Core-core repulsion = 20185.946741 eV Total energy + Delta-G solvation = -3610.404594 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30069 -38.43613 -37.91513 -37.05429 -36.98557 -36.42412 -34.52760 -30.95862 -30.15320 -29.35307 -27.26844 -27.03094 -23.85630 -22.57937 -22.12859 -20.09957 -19.15104 -18.87222 -18.47061 -18.31571 -17.63278 -17.27032 -16.61256 -16.00910 -15.89598 -15.37559 -15.05382 -14.83822 -14.57293 -14.49043 -13.97074 -13.77289 -13.62249 -13.46333 -13.37981 -13.27871 -13.22281 -13.14569 -13.01377 -12.76425 -12.69647 -12.25271 -12.14684 -11.94261 -11.53421 -11.33205 -11.23621 -11.06617 -10.50287 -10.11520 -9.69089 -8.09964 -6.25000 -0.46895 1.45664 1.47241 1.53975 1.85991 2.43240 2.48597 2.90392 3.09372 3.18301 3.19076 3.64226 3.88544 3.98248 4.08352 4.19014 4.40172 4.41930 4.64999 4.70198 4.74746 4.76943 4.86886 4.93178 4.96002 5.03666 5.12812 5.22010 5.24899 5.59661 5.70279 5.83254 6.08299 6.27272 6.73286 6.83813 6.85375 7.44791 8.94254 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.013170 B = 0.008020 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.594176 B = 3490.406928 C = 4681.423670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.026 0.974 4 C -0.528 4.528 5 H 0.067 0.933 6 C 0.020 3.980 7 N -0.916 5.916 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.270 1.270 12 N -0.996 5.996 13 C 0.100 3.900 14 S 2.809 3.191 15 O -0.997 6.997 16 O -1.008 7.008 17 N -1.013 6.013 18 C 0.088 3.912 19 C 0.114 3.886 20 H 0.098 0.902 21 O -0.566 6.566 22 C 0.104 3.896 23 H 0.072 0.928 24 O -0.562 6.562 25 C 0.095 3.905 26 H 0.043 0.957 27 H 0.018 0.982 28 H 0.070 0.930 29 H 0.264 0.736 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.402 0.598 36 H 0.400 0.600 37 H 0.088 0.912 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.532 -5.329 6.790 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.044 0.956 4 C -0.568 4.568 5 H 0.085 0.915 6 C -0.180 4.180 7 N -0.555 5.555 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.215 1.215 11 H -0.195 1.195 12 N -0.838 5.838 13 C -0.045 4.045 14 S 2.820 3.180 15 O -0.981 6.981 16 O -0.993 6.993 17 N -0.855 5.855 18 C -0.037 4.037 19 C 0.053 3.947 20 H 0.115 0.885 21 O -0.375 6.375 22 C 0.043 3.957 23 H 0.090 0.910 24 O -0.369 6.369 25 C -0.031 4.031 26 H 0.062 0.938 27 H 0.037 0.963 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.253 0.747 36 H 0.251 0.749 37 H 0.106 0.894 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.283 -4.758 7.368 13.516 hybrid contribution -0.316 -0.233 -1.245 1.306 sum 9.967 -4.991 6.123 12.718 Atomic orbital electron populations 1.21944 0.97866 1.00075 0.99970 1.18417 0.91982 0.91374 0.81381 0.95639 1.21532 1.31638 1.13051 0.90542 0.91530 1.25633 0.95160 0.95540 1.01641 1.70003 1.37203 1.23884 1.24412 0.85661 0.78838 0.78687 0.78712 1.19733 1.21500 1.19532 1.57726 1.64587 1.22624 1.38836 1.21388 1.00454 0.80428 1.02231 1.00920 0.71903 0.72469 0.72743 1.93521 1.86131 1.76297 1.42179 1.93537 1.84226 1.34326 1.87190 1.58753 1.28437 1.37223 1.61072 1.22629 0.90500 0.90073 1.00530 1.22623 0.92839 0.85187 0.94029 0.88459 1.86535 1.84651 1.27439 1.38825 1.22765 0.85381 0.91091 0.96429 0.91009 1.86405 1.35621 1.61060 1.53840 1.22644 0.93952 0.93638 0.92871 0.93773 0.96265 0.91099 0.92685 0.92841 0.90527 0.90772 0.89978 0.88731 0.74654 0.74913 0.89431 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.58 8.97 71.98 0.65 -5.94 16 2 C 0.27 13.13 2.62 44.25 0.12 13.25 16 3 H 0.03 1.40 6.91 -2.39 -0.02 1.38 16 4 C -0.53 -26.18 7.99 25.60 0.20 -25.97 16 5 H 0.07 3.18 7.33 -2.91 -0.02 3.16 16 6 C 0.02 1.04 5.30 84.65 0.45 1.48 16 7 N -0.92 -49.72 11.32 21.45 0.24 -49.48 16 8 Si 0.96 40.52 29.54 68.60 2.03 42.55 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 12 N -1.00 -40.27 3.12 -520.47 -1.62 -41.90 16 13 C 0.10 3.38 9.28 127.77 1.19 4.56 16 14 S 2.81 108.63 6.30 -56.49 -0.36 108.27 16 15 O -1.00 -38.88 16.79 -128.00 -2.15 -41.03 16 16 O -1.01 -46.20 16.29 -128.00 -2.08 -48.29 16 17 N -1.01 -31.86 3.76 -506.43 -1.90 -33.76 16 18 C 0.09 2.10 6.77 86.73 0.59 2.69 16 19 C 0.11 2.53 4.06 31.79 0.13 2.66 16 20 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 21 O -0.57 -11.81 13.40 -148.98 -2.00 -13.81 16 22 C 0.10 2.77 4.15 31.99 0.13 2.90 16 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 24 O -0.56 -13.45 13.47 -148.98 -2.01 -15.46 16 25 C 0.10 2.83 6.72 86.85 0.58 3.42 16 26 H 0.04 1.93 7.67 -2.39 -0.02 1.91 16 27 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 29 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 2.63 7.02 -2.39 -0.02 2.61 16 32 H 0.07 2.08 7.79 -2.39 -0.02 2.06 16 33 H 0.08 1.86 8.06 -2.39 -0.02 1.84 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.40 4.11 9.12 -74.05 -0.68 3.43 16 36 H 0.40 6.69 9.12 -74.06 -0.68 6.01 16 37 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -68.20 325.56 -6.08 -74.28 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.26 Total: 19.58 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 4.03 Total: -0.95 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -3.28 Total: -125.14 kcal Atomic # 8 Polarization: -110.35 SS G_CDS: -8.24 Total: -118.59 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: 108.63 SS G_CDS: -0.36 Total: 108.27 kcal Total: -68.20 -6.08 -74.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337771351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.876 kcal (2) G-P(sol) polarization free energy of solvation -68.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds