Wall clock time and date at job start Tue Mar 31 2020 03:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 109.46928 * 2 1 4 4 C 1.50690 * 109.47237 * 240.00153 * 2 1 3 5 5 H 1.08001 * 119.99937 * 267.33409 * 4 2 1 6 6 C 1.37877 * 120.00070 * 87.32883 * 4 2 1 7 7 N 1.31513 * 120.00438 * 353.64255 * 6 4 2 8 8 Si 1.86804 * 119.99784 * 173.64353 * 6 4 2 9 9 H 1.48500 * 109.47217 * 90.00225 * 8 6 4 10 10 H 1.48503 * 109.47509 * 330.00010 * 8 6 4 11 11 H 1.48507 * 109.47067 * 209.99822 * 8 6 4 12 12 N 1.46498 * 109.47088 * 119.99720 * 2 1 3 13 13 C 1.46496 * 119.99906 * 60.00063 * 12 2 1 14 14 S 1.65603 * 120.00158 * 240.00222 * 12 2 1 15 15 O 1.42098 * 106.40217 * 203.54250 * 14 12 2 16 16 O 1.42101 * 106.39964 * 336.45892 * 14 12 2 17 17 N 1.65597 * 107.21982 * 89.99973 * 14 12 2 18 18 C 1.46499 * 119.99923 * 64.99908 * 17 14 12 19 19 H 1.09000 * 108.85469 * 335.70131 * 18 17 14 20 20 C 1.52938 * 108.88915 * 217.12430 * 18 17 14 21 21 C 1.55002 * 109.04344 * 208.99491 * 20 18 17 22 22 S 1.83989 * 100.81876 * 41.60827 * 21 20 18 23 23 C 1.53712 * 108.88812 * 94.27597 * 18 17 14 24 24 H 1.09000 * 109.47068 * 294.35953 * 1 2 3 25 25 H 1.09004 * 109.46934 * 54.35748 * 1 2 3 26 26 H 1.08996 * 109.46836 * 174.36090 * 1 2 3 27 27 H 0.96996 * 119.99286 * 1.90570 * 7 6 4 28 28 H 1.09002 * 109.46843 * 89.99826 * 13 12 2 29 29 H 1.09003 * 109.47520 * 209.99808 * 13 12 2 30 30 H 1.09000 * 109.47350 * 330.00282 * 13 12 2 31 31 H 0.96997 * 119.99980 * 245.00079 * 17 14 12 32 32 H 1.09000 * 109.60183 * 329.03680 * 20 18 17 33 33 H 1.08997 * 109.60433 * 89.17520 * 20 18 17 34 34 H 1.08996 * 111.23136 * 283.70360 * 21 20 18 35 35 H 1.09003 * 111.14637 * 159.47791 * 21 20 18 36 36 H 1.08997 * 110.34327 * 242.49279 * 23 18 17 37 37 H 1.09005 * 110.33608 * 4.75306 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.2534 -1.7668 -1.1916 6 6 2.2097 -0.0116 -2.4057 7 7 1.8239 1.2429 -2.4896 8 14 2.9980 -0.8469 -3.8789 9 1 1.9446 -1.4857 -4.7081 10 1 3.9534 -1.8819 -3.4087 11 1 3.7227 0.1631 -4.6914 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9704 0.1143 2.2863 15 8 3.7118 -0.8787 2.9815 16 8 3.5794 1.1830 1.5748 17 7 1.9607 0.8092 3.3998 18 6 1.1509 -0.0351 4.2817 19 1 1.0044 -1.0041 3.8046 20 6 -0.2124 0.6271 4.4864 21 6 -0.7675 0.2229 5.8760 22 16 0.7532 0.3460 6.9044 23 6 1.9061 -0.2410 5.6046 24 1 -0.3633 0.4239 0.9362 25 1 -0.3633 0.5989 -0.8352 26 1 -0.3633 -1.0227 -0.1010 27 1 1.4399 1.6848 -1.7163 28 1 2.4158 -2.7376 0.9717 29 1 1.6238 -2.2852 2.5003 30 1 0.6904 -2.3002 0.9847 31 1 1.9054 1.7751 3.4681 32 1 -0.1039 1.7105 4.4359 33 1 -0.9008 0.2947 3.7094 34 1 -1.1534 -0.7964 5.8656 35 1 -1.5289 0.9255 6.2148 36 1 2.1350 -1.2967 5.7498 37 1 2.8213 0.3510 5.6145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337777337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:59 Heat of formation + Delta-G solvation = -104.287536 kcal Electronic energy + Delta-G solvation = -21009.885387 eV Core-core repulsion = 17846.000423 eV Total energy + Delta-G solvation = -3163.884964 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.76818 -38.31282 -37.98024 -36.96607 -34.66315 -33.26227 -30.96920 -29.91209 -27.26544 -26.76304 -25.62329 -22.83374 -21.97210 -20.59839 -19.26058 -18.65855 -18.52454 -17.82280 -17.24708 -16.50677 -16.05811 -15.66436 -15.44926 -15.19052 -14.95999 -14.74239 -14.15428 -13.86237 -13.68114 -13.56460 -13.35611 -13.28499 -13.21699 -13.08623 -12.89955 -12.81195 -12.65278 -12.55198 -12.32371 -12.02146 -11.94123 -11.89020 -11.16489 -10.85252 -10.65440 -10.52169 -9.65463 -8.74970 -8.59966 -6.31788 -0.45092 0.82467 1.32776 1.53708 1.62718 1.78909 1.93750 2.53027 2.58797 3.21947 3.31384 3.42374 3.69686 3.79511 3.88712 3.99501 4.21427 4.23192 4.50963 4.62339 4.63796 4.68789 4.77380 4.80706 4.84851 4.93410 4.98170 5.07763 5.15517 5.35185 5.52608 5.78250 6.00634 6.07742 6.29342 6.62842 7.45756 8.78941 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.030816 B = 0.004762 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.400435 B = 5878.570069 C = 6163.764869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.251 3.749 3 H 0.028 0.972 4 C -0.607 4.607 5 H 0.055 0.945 6 C -0.027 4.027 7 N -0.932 5.932 8 Si 1.109 2.891 9 H -0.267 1.267 10 H -0.277 1.277 11 H -0.288 1.288 12 N -0.991 5.991 13 C 0.099 3.901 14 S 2.790 3.210 15 O -1.004 7.004 16 O -1.020 7.020 17 N -1.110 6.110 18 C 0.148 3.852 19 H 0.101 0.899 20 C -0.129 4.129 21 C -0.050 4.050 22 S -0.336 6.336 23 C -0.081 4.081 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.261 0.739 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.423 0.577 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 -4.068 15.393 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.147 3.853 3 H 0.046 0.954 4 C -0.647 4.647 5 H 0.073 0.927 6 C -0.227 4.227 7 N -0.569 5.569 8 Si 0.932 3.068 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.214 1.214 12 N -0.833 5.833 13 C -0.046 4.046 14 S 2.799 3.201 15 O -0.987 6.987 16 O -1.004 7.004 17 N -0.872 5.872 18 C 0.039 3.961 19 H 0.119 0.881 20 C -0.169 4.169 21 C -0.198 4.198 22 S -0.111 6.111 23 C -0.231 4.231 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.259 0.741 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.122 0.878 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.401 -3.648 14.966 16.681 hybrid contribution -0.572 0.073 0.323 0.661 sum -6.973 -3.575 15.289 17.181 Atomic orbital electron populations 1.21984 0.96317 1.01184 0.99615 1.18646 0.92335 0.91828 0.82508 0.95444 1.22486 1.47902 0.97416 0.96930 0.92657 1.27072 0.95350 0.95986 1.04297 1.70890 1.40315 1.12904 1.32817 0.83031 0.76402 0.74603 0.72795 1.19269 1.20234 1.21434 1.57634 1.70003 1.20911 1.34713 1.21441 1.01893 0.80370 1.00907 1.01481 0.73725 0.72460 0.72405 1.93529 1.69616 1.61078 1.74502 1.93565 1.75818 1.57698 1.73346 1.56075 1.61707 1.18084 1.51366 1.21519 0.90398 0.94849 0.89345 0.88127 1.22642 0.93843 1.02764 0.97649 1.24412 0.95252 1.07058 0.93122 1.88031 1.08473 1.88724 1.25903 1.24562 0.99975 1.05310 0.93260 0.92513 0.94719 0.92384 0.92866 0.94271 0.89980 0.89771 0.74109 0.89113 0.87333 0.86997 0.85430 0.87766 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 8.98 71.98 0.65 -4.38 16 2 C 0.25 11.53 2.26 44.24 0.10 11.63 16 3 H 0.03 1.46 5.67 -2.38 -0.01 1.44 16 4 C -0.61 -32.07 8.28 25.60 0.21 -31.86 16 5 H 0.06 2.87 7.36 -2.91 -0.02 2.85 16 6 C -0.03 -1.50 5.45 84.65 0.46 -1.04 16 7 N -0.93 -55.17 13.62 21.45 0.29 -54.88 16 8 Si 1.11 49.58 29.91 68.60 2.05 51.63 16 9 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 12 N -0.99 -37.53 3.12 -520.45 -1.62 -39.15 16 13 C 0.10 3.04 9.15 127.77 1.17 4.21 16 14 S 2.79 102.99 5.98 -56.49 -0.34 102.65 16 15 O -1.00 -38.91 16.97 -128.00 -2.17 -41.08 16 16 O -1.02 -48.19 16.70 -128.00 -2.14 -50.32 16 17 N -1.11 -28.26 5.32 -168.47 -0.90 -29.15 16 18 C 0.15 2.93 3.17 45.21 0.14 3.07 16 19 H 0.10 1.85 6.04 -2.39 -0.01 1.84 16 20 C -0.13 -1.85 5.97 31.26 0.19 -1.66 16 21 C -0.05 -0.62 7.52 72.67 0.55 -0.08 16 22 S -0.34 -6.70 23.22 -56.49 -1.31 -8.01 16 23 C -0.08 -1.72 7.14 72.22 0.52 -1.20 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.03 1.47 7.76 -2.39 -0.02 1.45 16 26 H 0.06 2.06 6.91 -2.39 -0.02 2.04 16 27 H 0.26 15.40 6.35 -92.71 -0.59 14.81 16 28 H 0.04 1.30 8.10 -2.39 -0.02 1.28 16 29 H 0.08 1.93 6.14 -2.39 -0.01 1.91 16 30 H 0.08 2.34 6.54 -2.39 -0.02 2.33 16 31 H 0.42 9.55 8.60 -96.75 -0.83 8.72 16 32 H 0.09 1.31 7.79 -2.39 -0.02 1.29 16 33 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.10 2.27 7.89 -2.38 -0.02 2.25 16 Total: -1.00 -72.16 319.92 -1.72 -73.88 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.43 Total: 15.74 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 3.98 Total: -21.31 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -2.23 Total: -123.19 kcal Atomic # 8 Polarization: -87.10 SS G_CDS: -4.31 Total: -91.41 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.63 kcal Atomic # 16 Polarization: 96.29 SS G_CDS: -1.65 Total: 94.64 kcal Total: -72.16 -1.72 -73.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337777337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.405 kcal (2) G-P(sol) polarization free energy of solvation -72.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds