Wall clock time and date at job start Tue Mar 31 2020 04:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99744 * 2 1 4 4 O 1.20819 * 120.00138 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99786 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47108 * 179.97438 * 5 3 2 7 7 C 1.36570 * 120.00153 * 95.99692 * 6 5 3 8 8 H 1.08001 * 119.99937 * 319.94481 * 7 6 5 9 9 C 1.39239 * 120.00067 * 140.21395 * 7 6 5 10 10 N 1.31239 * 120.00461 * 337.69511 * 9 7 6 11 11 Si 1.86807 * 119.99949 * 157.69043 * 9 7 6 12 12 H 1.48494 * 109.46952 * 65.00213 * 11 9 7 13 13 H 1.48497 * 109.46961 * 185.00414 * 11 9 7 14 14 H 1.48505 * 109.46854 * 305.00482 * 11 9 7 15 15 C 1.34775 * 119.99933 * 275.99868 * 6 5 3 16 16 O 1.21675 * 120.00205 * 176.07160 * 15 6 5 17 17 C 1.47151 * 119.99872 * 356.06462 * 15 6 5 18 18 C 1.38205 * 125.86109 * 195.11353 * 17 15 6 19 19 C 1.39173 * 107.56220 * 179.90283 * 18 17 15 20 20 C 1.38463 * 107.44947 * 0.36720 * 19 18 17 21 21 C 1.46275 * 125.95268 * 179.77303 * 20 19 18 22 22 C 1.50698 * 119.99849 * 4.96533 * 21 20 19 23 23 O 1.21364 * 120.00077 * 184.96111 * 21 20 19 24 24 N 1.36705 * 125.86237 * 15.43600 * 17 15 6 25 25 H 0.96999 * 125.69149 * 359.94944 * 24 17 15 26 26 H 1.09003 * 109.46990 * 299.99904 * 1 2 3 27 27 H 1.08991 * 109.46973 * 60.00486 * 1 2 3 28 28 H 1.09006 * 109.46594 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47354 * 59.99553 * 5 3 2 30 30 H 1.09001 * 109.46932 * 299.99401 * 5 3 2 31 31 H 0.96997 * 120.00679 * 185.03702 * 10 9 7 32 32 H 1.08002 * 126.21881 * 0.02562 * 18 17 15 33 33 H 1.08002 * 126.27408 * 180.13248 * 19 18 17 34 34 H 1.09005 * 109.47152 * 89.99888 * 22 21 20 35 35 H 1.09001 * 109.46901 * 210.00010 * 22 21 20 36 36 H 1.09004 * 109.47230 * 330.00054 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.2942 3.2999 1.1749 8 1 3.7040 3.1097 2.0591 9 6 5.3704 4.1815 1.2325 10 7 6.3312 4.1034 0.3419 11 14 5.4466 5.4757 2.5774 12 1 5.5787 4.8099 3.8981 13 1 6.6184 6.3588 2.3488 14 1 4.2031 6.2873 2.5544 15 6 4.0553 3.3603 -1.1621 16 8 4.3307 4.5454 -1.1562 17 6 3.8028 2.6699 -2.4368 18 6 4.1230 3.1476 -3.6935 19 6 3.7192 2.1921 -4.6214 20 6 3.1488 1.1449 -3.9176 21 6 2.5840 -0.0731 -4.4981 22 6 2.6915 -0.3213 -5.9807 23 8 2.0289 -0.8839 -3.7858 24 7 3.2057 1.4487 -2.5817 25 1 2.8772 0.8903 -1.8598 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9558 0.7809 -0.8908 30 1 3.9564 0.7807 0.8892 31 1 7.1157 4.6679 0.4240 32 1 4.6017 4.0900 -3.9152 33 1 3.8271 2.2574 -5.6940 34 1 3.6121 -0.8654 -6.1922 35 1 1.8367 -0.9100 -6.3134 36 1 2.7037 0.6322 -6.5087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340560775.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:00 Heat of formation + Delta-G solvation = -71.458945 kcal Electronic energy + Delta-G solvation = -24502.227944 eV Core-core repulsion = 20761.569713 eV Total energy + Delta-G solvation = -3740.658232 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36001 -40.07517 -38.73227 -37.80475 -36.18739 -34.49995 -32.43142 -31.32398 -30.43141 -28.77241 -28.35506 -26.59849 -25.05765 -22.79658 -21.41783 -20.69157 -20.34881 -18.85915 -17.78257 -17.46965 -16.92765 -16.34359 -15.98454 -15.62106 -15.12993 -14.97241 -14.78793 -14.24541 -13.91589 -13.83747 -13.33218 -13.06873 -12.95789 -12.63290 -12.49770 -12.23569 -12.13180 -12.04490 -11.88776 -11.72768 -11.30935 -10.95109 -10.84780 -10.61124 -10.35899 -10.25789 -9.87573 -9.07563 -8.76985 -8.56707 -7.84928 -7.53995 -6.36021 -4.04801 1.16696 2.36960 2.51335 2.86636 3.23231 3.27662 3.31560 3.32225 3.37724 4.05006 4.33443 4.50560 4.62116 4.95642 5.02736 5.06665 5.22343 5.28430 5.32533 5.34081 5.40748 5.43258 5.53251 5.62422 5.66622 5.80592 5.82157 6.32042 6.42226 6.53425 6.89895 7.19606 7.40732 7.49151 7.64939 7.92823 8.04995 8.69506 8.85466 9.31298 9.90523 10.73461 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.006229 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.303156 B = 4493.748007 C = 5738.272806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.414 3.586 4 O -0.475 6.475 5 C 0.090 3.910 6 N -0.421 5.421 7 C -0.357 4.357 8 H 0.085 0.915 9 C 0.076 3.924 10 N -0.820 5.820 11 Si 0.923 3.077 12 H -0.276 1.276 13 H -0.283 1.283 14 H -0.270 1.270 15 C 0.537 3.463 16 O -0.505 6.505 17 C 0.047 3.953 18 C -0.156 4.156 19 C -0.123 4.123 20 C -0.098 4.098 21 C 0.418 3.582 22 C -0.185 4.185 23 O -0.480 6.480 24 N -0.522 5.522 25 H 0.417 0.583 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.272 0.728 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.266 -9.448 -8.062 13.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.253 3.747 4 O -0.359 6.359 5 C -0.038 4.038 6 N -0.142 5.142 7 C -0.482 4.482 8 H 0.103 0.897 9 C -0.137 4.137 10 N -0.452 5.452 11 Si 0.749 3.251 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.195 1.195 15 C 0.325 3.675 16 O -0.380 6.380 17 C -0.074 4.074 18 C -0.181 4.181 19 C -0.149 4.149 20 C -0.211 4.211 21 C 0.299 3.701 22 C -0.242 4.242 23 O -0.358 6.358 24 N -0.127 5.127 25 H 0.263 0.737 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.148 0.852 31 H 0.082 0.918 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.558 -8.902 -7.638 12.979 hybrid contribution -0.249 0.353 0.893 0.992 sum -5.807 -8.549 -6.745 12.341 Atomic orbital electron populations 1.23205 0.76839 1.03379 1.02332 1.86556 1.23246 1.33773 1.84502 1.25327 0.93730 0.81749 0.73908 1.90708 1.66544 1.36094 1.42554 1.21603 0.85894 0.90303 1.05975 1.42860 1.59210 1.05039 1.07134 1.18996 1.13802 1.27346 0.88104 0.89684 1.25266 0.93554 0.97802 0.97041 1.69745 1.05525 1.35898 1.34060 0.86100 0.78158 0.80966 0.79877 1.20191 1.20824 1.19520 1.16781 0.83326 0.86413 0.80982 1.90671 1.48742 1.13918 1.84637 1.21826 1.01832 0.85821 0.97930 1.21178 1.06004 1.01152 0.89752 1.21361 1.01392 0.93175 0.99015 1.20974 1.15037 1.00806 0.84291 1.21655 0.74728 0.82259 0.91486 1.22055 1.04702 1.04486 0.92973 1.90581 1.35731 1.45287 1.64227 1.43299 1.45098 1.16609 1.07646 0.73654 0.91989 0.92222 0.88229 0.88503 0.85244 0.91753 0.83121 0.83361 0.88372 0.89515 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.36 -6.06 10.54 -39.26 -0.41 -6.48 16 3 C 0.41 8.17 5.86 36.01 0.21 8.38 16 4 O -0.47 -10.95 16.04 -18.74 -0.30 -11.25 16 5 C 0.09 1.81 5.52 -5.19 -0.03 1.78 16 6 N -0.42 -10.68 2.08 -117.44 -0.24 -10.92 16 7 C -0.36 -9.68 9.19 -15.07 -0.14 -9.82 16 8 H 0.09 2.23 7.93 -52.49 -0.42 1.81 16 9 C 0.08 2.09 4.24 -17.43 -0.07 2.02 16 10 N -0.82 -23.35 11.75 55.51 0.65 -22.70 16 11 Si 0.92 21.50 29.61 -169.99 -5.03 16.47 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.54 14.21 6.65 -12.64 -0.08 14.13 16 16 O -0.50 -15.08 14.61 5.21 0.08 -15.00 16 17 C 0.05 1.03 6.60 -82.09 -0.54 0.49 16 18 C -0.16 -2.99 10.63 -39.25 -0.42 -3.40 16 19 C -0.12 -1.86 10.18 -39.15 -0.40 -2.26 16 20 C -0.10 -1.62 7.02 -82.19 -0.58 -2.19 16 21 C 0.42 5.92 7.22 -31.08 -0.22 5.70 16 22 C -0.18 -1.63 10.04 36.00 0.36 -1.27 16 23 O -0.48 -8.20 17.85 5.48 0.10 -8.10 16 24 N -0.52 -10.08 4.84 -5.96 -0.03 -10.11 16 25 H 0.42 7.93 3.69 -40.82 -0.15 7.78 16 26 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 27 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.10 1.82 5.09 -51.93 -0.26 1.55 16 30 H 0.13 2.30 7.99 -51.93 -0.41 1.89 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 33 H 0.15 1.58 7.34 -52.49 -0.39 1.19 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.63 7.02 -51.93 -0.36 0.26 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -35.35 318.47 -4.91 -40.26 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -3.67 Total: 7.92 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: -0.84 Total: 15.11 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.38 Total: -43.73 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -0.54 Total: -40.83 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.35 -4.91 -40.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340560775.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.199 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds