Wall clock time and date at job start Tue Mar 31 2020 04:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99744 * 2 1 4 4 O 1.20819 * 120.00138 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99786 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47108 * 179.97438 * 5 3 2 7 7 C 1.36570 * 120.00153 * 95.99692 * 6 5 3 8 8 H 1.08001 * 119.99937 * 319.94481 * 7 6 5 9 9 C 1.39239 * 120.00067 * 140.21395 * 7 6 5 10 10 N 1.31239 * 120.00461 * 337.69511 * 9 7 6 11 11 Si 1.86807 * 119.99949 * 157.69043 * 9 7 6 12 12 H 1.48494 * 109.46952 * 65.00213 * 11 9 7 13 13 H 1.48497 * 109.46961 * 185.00414 * 11 9 7 14 14 H 1.48505 * 109.46854 * 305.00482 * 11 9 7 15 15 C 1.34775 * 119.99933 * 275.99868 * 6 5 3 16 16 O 1.21675 * 120.00205 * 176.07160 * 15 6 5 17 17 C 1.47151 * 119.99872 * 356.06462 * 15 6 5 18 18 C 1.38205 * 125.86109 * 195.11353 * 17 15 6 19 19 C 1.39173 * 107.56220 * 179.90283 * 18 17 15 20 20 C 1.38463 * 107.44947 * 0.36720 * 19 18 17 21 21 C 1.46275 * 125.95268 * 179.77303 * 20 19 18 22 22 C 1.50698 * 119.99849 * 4.96533 * 21 20 19 23 23 O 1.21364 * 120.00077 * 184.96111 * 21 20 19 24 24 N 1.36705 * 125.86237 * 15.43600 * 17 15 6 25 25 H 0.96999 * 125.69149 * 359.94944 * 24 17 15 26 26 H 1.09003 * 109.46990 * 299.99904 * 1 2 3 27 27 H 1.08991 * 109.46973 * 60.00486 * 1 2 3 28 28 H 1.09006 * 109.46594 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47354 * 59.99553 * 5 3 2 30 30 H 1.09001 * 109.46932 * 299.99401 * 5 3 2 31 31 H 0.96997 * 120.00679 * 185.03702 * 10 9 7 32 32 H 1.08002 * 126.21881 * 0.02562 * 18 17 15 33 33 H 1.08002 * 126.27408 * 180.13248 * 19 18 17 34 34 H 1.09005 * 109.47152 * 89.99888 * 22 21 20 35 35 H 1.09001 * 109.46901 * 210.00010 * 22 21 20 36 36 H 1.09004 * 109.47230 * 330.00054 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.2942 3.2999 1.1749 8 1 3.7040 3.1097 2.0591 9 6 5.3704 4.1815 1.2325 10 7 6.3312 4.1034 0.3419 11 14 5.4466 5.4757 2.5774 12 1 5.5787 4.8099 3.8981 13 1 6.6184 6.3588 2.3488 14 1 4.2031 6.2873 2.5544 15 6 4.0553 3.3603 -1.1621 16 8 4.3307 4.5454 -1.1562 17 6 3.8028 2.6699 -2.4368 18 6 4.1230 3.1476 -3.6935 19 6 3.7192 2.1921 -4.6214 20 6 3.1488 1.1449 -3.9176 21 6 2.5840 -0.0731 -4.4981 22 6 2.6915 -0.3213 -5.9807 23 8 2.0289 -0.8839 -3.7858 24 7 3.2057 1.4487 -2.5817 25 1 2.8772 0.8903 -1.8598 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9558 0.7809 -0.8908 30 1 3.9564 0.7807 0.8892 31 1 7.1157 4.6679 0.4240 32 1 4.6017 4.0900 -3.9152 33 1 3.8271 2.2574 -5.6940 34 1 3.6121 -0.8654 -6.1922 35 1 1.8367 -0.9100 -6.3134 36 1 2.7037 0.6322 -6.5087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340560775.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:00 Heat of formation + Delta-G solvation = -95.901840 kcal Electronic energy + Delta-G solvation = -24503.287868 eV Core-core repulsion = 20761.569713 eV Total energy + Delta-G solvation = -3741.718155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.85724 -41.57138 -40.18633 -39.41580 -37.75746 -36.40930 -34.32774 -32.65880 -31.75624 -30.31699 -29.64224 -28.00388 -26.84259 -24.27262 -22.97100 -22.25846 -21.79985 -20.29076 -19.48299 -19.03249 -18.59216 -17.82782 -17.44316 -17.30084 -16.69557 -16.35107 -16.09917 -15.94909 -15.52160 -15.19941 -14.77999 -14.67231 -14.41833 -14.18200 -13.90212 -13.69031 -13.50316 -13.12990 -13.08933 -12.97390 -12.89558 -12.86455 -12.80992 -12.17908 -11.97349 -11.94941 -11.10289 -11.00762 -10.56506 -10.15322 -9.55230 -9.33538 -8.40213 -6.13627 -0.13720 0.79269 1.04364 1.32887 1.43131 1.46029 1.51488 1.87671 2.07377 2.18930 2.63404 2.80686 3.07481 3.18845 3.54801 3.70027 3.85291 4.11488 4.14138 4.17732 4.20399 4.25046 4.27967 4.56732 4.69172 4.77910 4.92073 5.05030 5.07497 5.27890 5.32236 5.51741 5.78118 5.97547 6.10226 6.46132 6.49408 6.71509 6.88427 7.31652 7.94817 8.70373 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.006229 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.303156 B = 4493.748007 C = 5738.272806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.427 3.573 4 O -0.514 6.514 5 C 0.088 3.912 6 N -0.437 5.437 7 C -0.380 4.380 8 H 0.085 0.915 9 C 0.032 3.968 10 N -0.855 5.855 11 Si 0.980 3.020 12 H -0.251 1.251 13 H -0.279 1.279 14 H -0.284 1.284 15 C 0.527 3.473 16 O -0.560 6.560 17 C -0.004 4.004 18 C -0.157 4.157 19 C -0.100 4.100 20 C -0.093 4.093 21 C 0.421 3.579 22 C -0.176 4.176 23 O -0.511 6.511 24 N -0.528 5.528 25 H 0.414 0.586 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.142 0.858 29 H 0.112 0.888 30 H 0.150 0.850 31 H 0.271 0.729 32 H 0.148 0.852 33 H 0.205 0.795 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.006 -11.506 -10.160 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.268 3.732 4 O -0.402 6.402 5 C -0.038 4.038 6 N -0.157 5.157 7 C -0.506 4.506 8 H 0.102 0.898 9 C -0.177 4.177 10 N -0.488 5.488 11 Si 0.803 3.197 12 H -0.175 1.175 13 H -0.204 1.204 14 H -0.210 1.210 15 C 0.317 3.683 16 O -0.439 6.439 17 C -0.124 4.124 18 C -0.183 4.183 19 C -0.125 4.125 20 C -0.206 4.206 21 C 0.303 3.697 22 C -0.233 4.233 23 O -0.391 6.391 24 N -0.133 5.133 25 H 0.260 0.740 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.160 0.840 29 H 0.129 0.871 30 H 0.167 0.833 31 H 0.080 0.920 32 H 0.166 0.834 33 H 0.222 0.778 34 H 0.141 0.859 35 H 0.118 0.882 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.305 -11.030 -9.719 15.996 hybrid contribution -0.172 0.807 1.399 1.625 sum -6.478 -10.223 -8.320 14.686 Atomic orbital electron populations 1.23602 0.74533 1.06120 1.02264 1.86535 1.25345 1.31636 1.83650 1.24997 0.93368 0.82000 0.72855 1.90695 1.67241 1.37553 1.44699 1.21714 0.86582 0.87887 1.07645 1.42961 1.59214 1.06920 1.06594 1.19245 1.13884 1.28665 0.88814 0.89761 1.26094 0.93248 0.99150 0.99225 1.69826 1.06080 1.36881 1.35966 0.85233 0.77311 0.78460 0.78647 1.17470 1.20394 1.21030 1.17445 0.81950 0.86283 0.82603 1.90595 1.51241 1.16134 1.85966 1.21306 1.06208 0.87935 0.96901 1.21448 1.05340 1.01784 0.89762 1.21866 0.99042 0.90660 1.00929 1.21903 1.13495 1.02078 0.83137 1.22497 0.73022 0.80390 0.93793 1.22150 1.06458 1.06571 0.88083 1.90582 1.36972 1.45883 1.65651 1.43262 1.45246 1.15773 1.08974 0.74024 0.91641 0.92836 0.84024 0.87055 0.83277 0.91955 0.83400 0.77798 0.85907 0.88169 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.36 -11.50 10.54 -51.41 -0.54 -12.04 16 3 C 0.43 17.04 5.86 71.24 0.42 17.45 16 4 O -0.51 -24.40 16.04 21.98 0.35 -24.05 16 5 C 0.09 3.64 5.52 85.63 0.47 4.11 16 6 N -0.44 -23.07 2.08 -643.69 -1.34 -24.40 16 7 C -0.38 -21.46 9.19 84.20 0.77 -20.69 16 8 H 0.08 4.59 7.93 -2.91 -0.02 4.57 16 9 C 0.03 1.82 4.24 85.02 0.36 2.18 16 10 N -0.85 -50.75 11.75 21.71 0.26 -50.49 16 11 Si 0.98 45.44 29.61 68.60 2.03 47.47 16 12 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 15 C 0.53 29.27 6.65 86.58 0.58 29.84 16 16 O -0.56 -35.45 14.61 -4.27 -0.06 -35.51 16 17 C 0.00 -0.20 6.60 40.72 0.27 0.07 16 18 C -0.16 -5.94 10.63 22.49 0.24 -5.70 16 19 C -0.10 -2.68 10.18 22.55 0.23 -2.45 16 20 C -0.09 -2.81 7.02 40.46 0.28 -2.53 16 21 C 0.42 10.39 7.22 27.78 0.20 10.59 16 22 C -0.18 -2.11 10.04 71.24 0.71 -1.39 16 23 O -0.51 -16.15 17.85 -3.29 -0.06 -16.21 16 24 N -0.53 -20.19 4.84 -172.78 -0.84 -21.02 16 25 H 0.41 15.71 3.69 -92.71 -0.34 15.37 16 26 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 27 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 28 H 0.14 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.11 4.25 5.09 -2.39 -0.01 4.24 16 30 H 0.15 5.39 7.99 -2.39 -0.02 5.37 16 31 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.15 5.55 8.06 -2.91 -0.02 5.53 16 33 H 0.21 3.05 7.34 -2.91 -0.02 3.03 16 34 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.12 0.83 7.02 -2.39 -0.02 0.81 16 Total: -1.00 -83.06 318.47 6.33 -76.72 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.80 Total: 26.15 kcal Atomic # 6 Polarization: 27.65 SS G_CDS: 5.73 Total: 33.38 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -1.92 Total: -95.92 kcal Atomic # 8 Polarization: -87.49 SS G_CDS: -0.31 Total: -87.80 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -83.06 6.33 -76.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340560775.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.178 kcal (2) G-P(sol) polarization free energy of solvation -83.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds