Wall clock time and date at job start Tue Mar 31 2020 03:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76197 * 103.00195 * 2 1 4 4 C 1.39305 * 119.93585 * 180.02562 * 3 2 1 5 5 C 1.37093 * 120.06308 * 180.28464 * 4 3 2 6 6 C 1.39837 * 119.93376 * 359.49176 * 5 4 3 7 7 C 1.47472 * 120.05976 * 180.25959 * 6 5 4 8 8 O 1.21610 * 119.99947 * 180.25362 * 7 6 5 9 9 N 1.34778 * 120.00562 * 0.24977 * 7 6 5 10 10 C 1.46501 * 120.00313 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.46909 * 179.97438 * 10 9 7 12 12 O 1.21297 * 120.00201 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99613 * 179.97438 * 11 10 9 14 14 C 1.37097 * 119.99604 * 180.02562 * 13 11 10 15 15 H 1.08002 * 120.00505 * 359.97438 * 14 13 11 16 16 C 1.38951 * 119.99757 * 179.97438 * 14 13 11 17 17 N 1.31414 * 120.00080 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00233 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47129 * 89.99587 * 18 16 14 20 20 H 1.48496 * 109.47120 * 209.99500 * 18 16 14 21 21 H 1.48505 * 109.46819 * 329.99919 * 18 16 14 22 22 C 1.39829 * 119.87344 * 0.50458 * 6 5 4 23 23 C 1.37095 * 119.93663 * 359.75524 * 22 6 5 24 24 H 1.08998 * 109.47135 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47064 * 299.99888 * 1 2 3 26 26 H 1.08998 * 109.47254 * 59.99501 * 1 2 3 27 27 H 1.08002 * 119.96502 * 0.02562 * 4 3 2 28 28 H 1.07995 * 120.02692 * 179.72493 * 5 4 3 29 29 H 0.96998 * 119.99284 * 0.02562 * 9 7 6 30 30 H 1.08998 * 109.46567 * 299.99696 * 10 9 7 31 31 H 1.09003 * 109.47242 * 59.99773 * 10 9 7 32 32 H 0.96994 * 120.00462 * 359.97438 * 13 11 10 33 33 H 0.97004 * 120.00115 * 179.97438 * 17 16 14 34 34 H 1.07997 * 120.03391 * 179.72916 * 22 6 5 35 35 H 1.08002 * 119.96713 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5431 2.1225 -0.0005 5 6 3.8545 3.4576 0.0054 6 6 2.8329 4.4125 0.0012 7 6 3.1647 5.8494 0.0017 8 8 2.2754 6.6788 0.0027 9 7 4.4536 6.2434 0.0011 10 6 4.7832 7.6709 0.0022 11 6 6.2806 7.8406 0.0020 12 8 7.0016 6.8652 0.0014 13 7 6.8187 9.0763 0.0023 14 6 8.1809 9.2308 0.0015 15 1 8.8229 8.3623 0.0011 16 6 8.7356 10.5047 0.0014 17 7 10.0414 10.6528 0.0011 18 14 7.6254 12.0070 0.0029 19 1 7.3325 12.4046 1.4035 20 1 8.3056 13.1259 -0.6973 21 1 6.3554 11.6845 -0.6960 22 6 1.4961 4.0022 0.0016 23 6 1.1906 2.6657 0.0011 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 4.3317 1.3846 -0.0014 28 1 4.8878 3.7715 0.0094 29 1 5.1629 5.5818 0.0000 30 1 4.3637 8.1412 -0.8870 31 1 4.3649 8.1397 0.8930 32 1 6.2422 9.8564 0.0024 33 1 10.4287 11.5422 0.0006 34 1 0.7051 4.7374 0.0028 35 1 0.1583 2.3483 0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344145910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:06 Heat of formation + Delta-G solvation = -65.844087 kcal Electronic energy + Delta-G solvation = -19807.355919 eV Core-core repulsion = 16509.694037 eV Total energy + Delta-G solvation = -3297.661882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.41699 -40.32713 -39.21296 -36.33496 -35.45523 -33.85555 -32.73263 -32.21423 -29.91884 -29.26328 -26.51142 -24.80352 -23.53986 -21.61327 -21.50683 -20.61563 -19.37893 -18.50853 -17.58863 -17.13408 -16.82706 -16.79130 -16.14888 -15.86472 -15.61214 -15.61008 -15.26550 -14.81929 -14.71612 -14.69126 -14.30407 -14.03865 -13.91608 -13.55050 -13.51321 -12.98558 -12.97271 -12.45416 -12.29335 -12.00811 -11.59202 -11.31634 -11.15370 -10.86515 -10.68225 -10.35443 -10.24135 -10.18084 -8.46285 -8.46271 -6.08479 -0.41967 0.29782 0.48045 1.30619 1.33606 1.41095 1.43636 1.65934 1.78052 1.93644 2.20016 2.71577 2.83848 3.09810 3.64344 3.68585 3.83577 3.98757 4.20149 4.27843 4.28241 4.35495 4.38705 4.38782 4.51083 4.86252 4.91568 5.06902 5.12769 5.16144 5.25857 5.47407 5.67702 5.86950 6.40399 6.47323 6.76927 7.03403 7.27795 7.76154 8.70009 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.042892 B = 0.002576 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.638969 B =10867.072201 C =11499.264161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.127 6.127 3 C -0.064 4.064 4 C -0.115 4.115 5 C -0.065 4.065 6 C -0.158 4.158 7 C 0.561 3.439 8 O -0.574 6.574 9 N -0.706 5.706 10 C 0.117 3.883 11 C 0.444 3.556 12 O -0.614 6.614 13 N -0.577 5.577 14 C -0.332 4.332 15 H 0.064 0.936 16 C -0.009 4.009 17 N -0.925 5.925 18 Si 0.959 3.041 19 H -0.256 1.256 20 H -0.273 1.273 21 H -0.232 1.232 22 C -0.042 4.042 23 C -0.141 4.141 24 H 0.127 0.873 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.148 0.852 28 H 0.139 0.861 29 H 0.413 0.587 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.392 0.608 33 H 0.281 0.719 34 H 0.142 0.858 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.771 -16.756 -0.017 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.117 5.883 3 C -0.178 4.178 4 C -0.139 4.139 5 C -0.086 4.086 6 C -0.163 4.163 7 C 0.350 3.650 8 O -0.455 6.455 9 N -0.360 5.360 10 C -0.011 4.011 11 C 0.232 3.768 12 O -0.500 6.500 13 N -0.217 5.217 14 C -0.460 4.460 15 H 0.082 0.918 16 C -0.209 4.209 17 N -0.565 5.565 18 Si 0.779 3.221 19 H -0.181 1.181 20 H -0.198 1.198 21 H -0.156 1.156 22 C -0.063 4.063 23 C -0.165 4.165 24 H 0.146 0.854 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.165 0.835 28 H 0.156 0.844 29 H 0.252 0.748 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.228 0.772 33 H 0.091 0.909 34 H 0.160 0.840 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.055 -17.764 -0.016 28.319 hybrid contribution -0.088 1.960 -0.002 1.962 sum -22.144 -15.804 -0.018 27.205 Atomic orbital electron populations 1.23875 0.91460 1.08842 1.06935 1.85703 1.10098 1.01219 1.91256 1.22337 0.96753 0.97987 1.00678 1.20788 0.95226 0.95887 1.01964 1.21308 0.99222 0.92689 0.95346 1.19871 0.95567 0.91411 1.09490 1.18439 0.81764 0.89168 0.75648 1.90741 1.47565 1.54936 1.52265 1.45663 1.08106 1.08090 1.74149 1.20940 0.91043 0.83644 1.05463 1.20474 0.90595 0.83304 0.82442 1.90526 1.63453 1.39593 1.56459 1.41921 1.06577 1.07004 1.66156 1.19030 0.81468 0.94749 1.50801 0.91804 1.26083 0.97644 1.01448 0.95700 1.69781 1.12153 1.25356 1.49167 0.85439 0.79248 0.77322 0.80080 1.18073 1.19823 1.15560 1.21133 0.95022 0.96422 0.93686 1.21258 0.99742 0.91866 1.03597 0.85417 0.88495 0.88503 0.83470 0.84367 0.74790 0.87503 0.87417 0.77172 0.90899 0.84018 0.82453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.14 113.37 1.04 0.14 16 2 S -0.13 -1.78 22.56 -56.49 -1.27 -3.05 16 3 C -0.06 -1.15 6.13 22.78 0.14 -1.01 16 4 C -0.12 -2.26 9.75 22.26 0.22 -2.04 16 5 C -0.07 -1.45 9.51 22.39 0.21 -1.24 16 6 C -0.16 -3.96 5.88 -20.07 -0.12 -4.08 16 7 C 0.56 17.09 7.76 86.68 0.67 17.76 16 8 O -0.57 -20.05 16.34 -4.06 -0.07 -20.12 16 9 N -0.71 -22.20 5.48 -470.05 -2.57 -24.77 16 10 C 0.12 3.82 6.15 85.63 0.53 4.35 16 11 C 0.44 19.30 7.85 87.66 0.69 19.99 16 12 O -0.61 -31.49 15.24 -3.08 -0.05 -31.54 16 13 N -0.58 -26.39 5.09 -306.98 -1.56 -27.95 16 14 C -0.33 -18.76 10.16 84.04 0.85 -17.90 16 15 H 0.06 4.27 7.39 -2.91 -0.02 4.24 16 16 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 17 N -0.92 -54.22 13.96 21.66 0.30 -53.91 16 18 Si 0.96 37.92 27.74 68.60 1.90 39.82 16 19 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 22 C -0.04 -0.89 9.56 22.39 0.21 -0.68 16 23 C -0.14 -2.35 9.32 22.26 0.21 -2.14 16 24 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.10 0.47 7.74 -2.39 -0.02 0.46 16 26 H 0.10 0.47 7.74 -2.39 -0.02 0.46 16 27 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 28 H 0.14 2.97 6.39 -2.91 -0.02 2.96 16 29 H 0.41 12.96 5.45 -92.71 -0.51 12.46 16 30 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.39 15.02 5.76 -92.71 -0.53 14.48 16 33 H 0.28 15.07 8.31 -92.71 -0.77 14.29 16 34 H 0.14 2.90 7.64 -2.91 -0.02 2.88 16 35 H 0.16 1.64 5.86 -2.91 -0.02 1.63 16 Total: -1.00 -73.48 318.62 1.85 -71.63 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: 0.05 Total: 36.76 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 5.12 Total: 13.14 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -3.83 Total: -106.64 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.11 Total: -51.66 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 1.90 Total: 39.82 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -1.27 Total: -3.05 kcal Total: -73.48 1.85 -71.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344145910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.784 kcal (2) G-P(sol) polarization free energy of solvation -73.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds