Wall clock time and date at job start Tue Mar 31 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 120.00253 * 2 1 4 4 H 1.48494 * 109.47116 * 270.00227 * 3 2 1 5 5 H 1.48500 * 109.46911 * 30.00539 * 3 2 1 6 6 H 1.48504 * 109.46999 * 150.00391 * 3 2 1 7 7 C 1.38950 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00201 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99689 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00558 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99766 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.47078 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99947 * 180.02562 * 13 12 10 15 15 O 1.21277 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00031 * 180.02562 * 14 13 12 17 17 S 1.81394 * 109.47167 * 179.97438 * 16 14 13 18 18 C 1.76199 * 103.00056 * 180.02562 * 17 16 14 19 19 C 1.38975 * 120.07816 * 180.02562 * 18 17 16 20 20 C 1.38086 * 119.91892 * 179.97438 * 19 18 17 21 21 C 1.38310 * 120.07752 * 359.97438 * 20 19 18 22 22 C 1.38301 * 120.16067 * 0.02562 * 21 20 19 23 23 C 1.38081 * 120.08205 * 359.97438 * 22 21 20 24 24 H 0.97009 * 119.99916 * 359.97438 * 1 2 3 25 25 H 0.96995 * 120.00200 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.47358 * 59.99732 * 12 10 9 27 27 H 1.08996 * 109.47114 * 299.99724 * 12 10 9 28 28 H 0.96998 * 120.00236 * 359.97438 * 13 12 10 29 29 H 1.09000 * 109.46878 * 59.99790 * 16 14 13 30 30 H 1.09004 * 109.47053 * 299.99736 * 16 14 13 31 31 H 1.07995 * 120.04427 * 359.69664 * 19 18 17 32 32 H 1.08000 * 119.96089 * 179.97438 * 20 19 18 33 33 H 1.07995 * 119.91521 * 179.97438 * 21 20 19 34 34 H 1.07996 * 119.95950 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.04201 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2100 -3.5579 -0.0010 12 6 1.2435 -4.8629 0.0000 13 7 2.1955 -5.9765 -0.0007 14 6 1.7462 -7.2471 -0.0009 15 8 0.5538 -7.4687 0.0001 16 6 2.7255 -8.3926 -0.0010 17 16 1.8184 -9.9635 -0.0005 18 6 3.1070 -11.1653 0.0000 19 6 2.7962 -12.5198 0.0000 20 6 3.8086 -13.4588 -0.0002 21 6 5.1307 -13.0526 -0.0008 22 6 5.4438 -11.7055 -0.0008 23 6 4.4366 -10.7609 -0.0006 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3906 0.0002 26 1 0.6165 -4.9209 -0.8896 27 1 0.6173 -4.9205 0.8903 28 1 3.1492 -5.7993 -0.0018 29 1 3.3521 -8.3350 0.8889 30 1 3.3521 -8.3348 -0.8911 31 1 1.7641 -12.8377 0.0046 32 1 3.5678 -14.5116 0.0002 33 1 5.9205 -13.7892 -0.0005 34 1 6.4772 -11.3919 -0.0009 35 1 4.6818 -9.7091 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344182504.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:04 Heat of formation + Delta-G solvation = -48.885134 kcal Electronic energy + Delta-G solvation = -19352.928898 eV Core-core repulsion = 16056.002412 eV Total energy + Delta-G solvation = -3296.926487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.68334 -39.16621 -38.17892 -34.57231 -33.78750 -31.75336 -31.43360 -31.21833 -30.31145 -27.25265 -24.50094 -23.05589 -22.84007 -20.54904 -19.69451 -18.40422 -18.05240 -17.08655 -16.62728 -15.87237 -15.86619 -15.50042 -15.20710 -14.71126 -14.53408 -14.48438 -14.03559 -13.71646 -13.67219 -13.41533 -13.14392 -12.86141 -12.28203 -11.94222 -11.77580 -11.67238 -11.44052 -11.16354 -10.49726 -10.36844 -10.35467 -10.03218 -10.01469 -9.68886 -9.29058 -8.97519 -8.70953 -8.15805 -7.57387 -6.56301 -3.98658 0.92296 1.06748 1.10932 2.16437 2.56482 3.08217 3.16919 3.20481 3.26679 3.42006 3.67328 4.06641 4.54035 4.62829 4.65839 4.72173 4.79218 4.79425 4.96968 5.09407 5.12036 5.21833 5.43624 5.67672 5.80829 5.86812 5.96950 5.98829 6.07479 6.19852 6.49321 6.60106 7.41346 7.56873 7.86031 8.20456 8.39136 8.99239 9.33192 9.80577 10.60364 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.044811 B = 0.002317 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.701578 B =12082.891955 C =12687.147776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.598 6.598 12 C 0.109 3.891 13 N -0.700 5.700 14 C 0.530 3.470 15 O -0.530 6.530 16 C -0.150 4.150 17 S -0.031 6.031 18 C -0.098 4.098 19 C -0.101 4.101 20 C -0.101 4.101 21 C -0.130 4.130 22 C -0.099 4.099 23 C -0.138 4.138 24 H 0.275 0.725 25 H 0.396 0.604 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.413 0.587 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.557 -21.982 0.010 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.485 6.485 12 C -0.018 4.018 13 N -0.354 5.354 14 C 0.313 3.687 15 O -0.407 6.407 16 C -0.301 4.301 17 S 0.214 5.786 18 C -0.211 4.211 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.151 4.151 22 C -0.119 4.119 23 C -0.162 4.162 24 H 0.085 0.915 25 H 0.230 0.770 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.251 0.749 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.087 -21.929 0.016 22.511 hybrid contribution 1.731 1.179 -0.011 2.094 sum 6.818 -20.750 0.006 21.841 Atomic orbital electron populations 1.69614 1.06028 1.28625 1.49025 1.25346 0.95687 1.00004 0.96677 0.85799 0.79223 0.80404 0.78526 1.20221 1.20755 1.19298 1.19731 0.93470 0.81948 1.48419 0.87636 1.41795 1.09528 1.04477 1.62341 1.19689 0.88276 0.84946 0.85890 1.90496 1.13679 1.86786 1.57573 1.21006 0.91738 0.85530 1.03542 1.45563 1.11878 1.04183 1.73809 1.19433 0.88727 0.83265 0.77278 1.90749 1.16040 1.84302 1.49572 1.23802 1.02603 0.95670 1.08059 1.86214 1.06755 0.94046 1.91624 1.22182 0.97209 0.97934 1.03816 1.20746 0.99855 0.90650 1.01289 1.21100 0.92643 0.99313 0.99064 1.21180 0.96548 0.95951 1.01450 1.21085 0.99041 0.93063 0.98709 1.21234 0.91655 1.00026 1.03267 0.91511 0.76981 0.89566 0.89557 0.74914 0.86355 0.86353 0.85429 0.85580 0.85913 0.85720 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.54 13.05 55.50 0.72 -22.82 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.26 29.55 -169.99 -5.02 15.23 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.31 -8.19 9.68 -14.93 -0.14 -8.34 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.30 5.29 -10.96 -0.06 -13.35 16 10 C 0.43 9.50 7.85 -10.98 -0.09 9.41 16 11 O -0.60 -14.87 15.24 5.55 0.08 -14.78 16 12 C 0.11 1.94 6.15 -5.19 -0.03 1.91 16 13 N -0.70 -10.91 5.53 -61.47 -0.34 -11.25 16 14 C 0.53 7.88 7.85 -10.98 -0.09 7.79 16 15 O -0.53 -9.63 15.86 5.56 0.09 -9.54 16 16 C -0.15 -1.65 4.82 36.01 0.17 -1.48 16 17 S -0.03 -0.37 21.06 -107.50 -2.26 -2.64 16 18 C -0.10 -1.04 6.11 -39.04 -0.24 -1.28 16 19 C -0.10 -0.96 9.79 -39.36 -0.39 -1.35 16 20 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 21 C -0.13 -0.99 10.04 -39.53 -0.40 -1.39 16 22 C -0.10 -0.81 10.04 -39.62 -0.40 -1.21 16 23 C -0.14 -1.30 9.36 -39.37 -0.37 -1.67 16 24 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.40 9.26 7.90 -40.82 -0.32 8.94 16 26 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 28 H 0.41 6.16 7.44 -40.82 -0.30 5.86 16 29 H 0.12 1.07 7.75 -51.92 -0.40 0.66 16 30 H 0.12 1.07 7.75 -51.92 -0.40 0.66 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.12 1.00 5.88 -52.49 -0.31 0.69 16 LS Contribution 324.84 15.07 4.90 4.90 Total: -1.00 -31.42 324.84 -8.14 -39.56 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -3.79 Total: 12.92 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -2.46 Total: 1.77 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.33 Total: -47.42 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.17 Total: -24.32 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -2.26 Total: -2.64 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.42 -8.14 -39.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344182504.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.328 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds