Wall clock time and date at job start Tue Mar 31 2020 04:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99890 * 2 1 4 4 O 1.20826 * 120.00461 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00080 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47435 * 179.97438 * 5 3 2 7 7 C 1.36864 * 119.99734 * 87.41392 * 6 5 3 8 8 H 1.07999 * 120.00028 * 37.90050 * 7 6 5 9 9 C 1.39020 * 120.00214 * 217.89166 * 7 6 5 10 10 N 1.31390 * 119.99527 * 19.78395 * 9 7 6 11 11 Si 1.86799 * 120.00315 * 199.78089 * 9 7 6 12 12 H 1.48495 * 109.47150 * 59.99690 * 11 9 7 13 13 H 1.48498 * 109.47304 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46827 * 300.00315 * 11 9 7 15 15 C 1.34778 * 119.99874 * 267.42153 * 6 5 3 16 16 O 1.21712 * 119.99699 * 187.36600 * 15 6 5 17 17 C 1.46717 * 120.00007 * 7.35644 * 15 6 5 18 18 C 1.36352 * 125.80587 * 188.43323 * 17 15 6 19 19 C 1.41559 * 106.97599 * 179.85736 * 18 17 15 20 20 C 1.46619 * 126.50960 * 180.13830 * 19 18 17 21 21 C 1.50700 * 120.00128 * 180.29658 * 20 19 18 22 22 O 1.21325 * 119.99915 * 0.30027 * 20 19 18 23 23 C 1.38636 * 106.97615 * 0.40697 * 19 18 17 24 24 N 1.34144 * 108.36124 * 359.75156 * 23 19 18 25 25 H 0.97005 * 125.34718 * 180.02562 * 24 23 19 26 26 H 1.09002 * 109.46782 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46899 * 300.00183 * 1 2 3 28 28 H 1.08992 * 109.47290 * 59.99967 * 1 2 3 29 29 H 1.09004 * 109.46824 * 59.99624 * 5 3 2 30 30 H 1.09001 * 109.46833 * 300.00128 * 5 3 2 31 31 H 0.97004 * 119.99811 * 184.95647 * 10 9 7 32 32 H 1.07999 * 126.51231 * 0.02562 * 18 17 15 33 33 H 1.09002 * 109.46519 * 89.99697 * 21 20 19 34 34 H 1.08998 * 109.47417 * 210.00020 * 21 20 19 35 35 H 1.09000 * 109.46913 * 330.00243 * 21 20 19 36 36 H 1.08005 * 125.81377 * 179.78354 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9818 2.6798 -0.0011 7 6 4.1250 3.3514 1.1828 8 1 4.5348 2.8456 2.0445 9 6 3.7430 4.6849 1.2761 10 7 2.9090 5.1924 0.3968 11 14 4.4154 5.7550 2.6517 12 1 5.8962 5.8119 2.5558 13 1 3.8580 7.1260 2.5298 14 1 4.0262 5.1776 3.9633 15 6 4.2228 3.3108 -1.1674 16 8 4.6954 4.4324 -1.1660 17 6 3.9156 2.6457 -2.4385 18 6 4.2561 3.0988 -3.6786 19 6 3.7688 2.1530 -4.6124 20 6 3.9025 2.2186 -6.0710 21 6 3.3183 1.1276 -6.9310 22 8 4.4834 3.1511 -6.5856 23 6 3.1358 1.1561 -3.8860 24 7 3.2283 1.4594 -2.5826 25 1 2.8686 0.9273 -1.8557 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 3.9557 0.7809 -0.8908 30 1 3.9564 0.7806 0.8892 31 1 2.6983 6.1390 0.4183 32 1 4.7973 4.0054 -3.9053 33 1 2.2925 1.3840 -7.1960 34 1 3.9127 1.0228 -7.8386 35 1 3.3270 0.1870 -6.3804 36 1 2.6512 0.2838 -4.2993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348797989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:10 Heat of formation + Delta-G solvation = -94.419047 kcal Electronic energy + Delta-G solvation = -24273.787919 eV Core-core repulsion = 20532.134063 eV Total energy + Delta-G solvation = -3741.653856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.83491 -41.37827 -39.99569 -39.43092 -37.52269 -36.26428 -34.18685 -32.68953 -31.51605 -30.18720 -29.61939 -27.84656 -26.68700 -24.01464 -23.41114 -22.21222 -21.34944 -20.21981 -19.23551 -18.76383 -18.47660 -17.67426 -17.33171 -16.84031 -16.62211 -16.13308 -16.00020 -15.90463 -15.55801 -15.37425 -14.74539 -14.60428 -14.38622 -14.26342 -14.10075 -13.46353 -13.27657 -12.97766 -12.91940 -12.90560 -12.82814 -12.78195 -12.72453 -12.20791 -11.77004 -11.61752 -10.98841 -10.71777 -10.54351 -10.17364 -9.45817 -9.29789 -8.25703 -6.06369 0.45816 0.66328 1.07847 1.36733 1.44657 1.49011 1.60928 2.04352 2.27057 2.29510 2.73427 2.85422 3.29109 3.43022 3.71452 3.82908 3.96926 4.07232 4.12800 4.30473 4.34173 4.37410 4.39872 4.69421 4.72885 4.83538 4.88937 4.99314 5.30963 5.35306 5.38192 5.56906 5.62535 6.03545 6.26610 6.75533 6.81561 6.83058 7.01711 7.41825 8.05127 8.79869 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.006224 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.803492 B = 4497.679166 C = 6023.366718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.413 3.587 4 O -0.498 6.498 5 C 0.088 3.912 6 N -0.443 5.443 7 C -0.368 4.368 8 H 0.103 0.897 9 C 0.017 3.983 10 N -0.849 5.849 11 Si 0.974 3.026 12 H -0.274 1.274 13 H -0.293 1.293 14 H -0.253 1.253 15 C 0.536 3.464 16 O -0.568 6.568 17 C -0.051 4.051 18 C -0.098 4.098 19 C -0.293 4.293 20 C 0.422 3.578 21 C -0.183 4.183 22 O -0.532 6.532 23 C 0.114 3.886 24 N -0.528 5.528 25 H 0.424 0.576 26 H 0.145 0.855 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.130 0.870 30 H 0.147 0.853 31 H 0.256 0.744 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -19.832 -6.234 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.252 3.748 4 O -0.382 6.382 5 C -0.039 4.039 6 N -0.164 5.164 7 C -0.494 4.494 8 H 0.120 0.880 9 C -0.191 4.191 10 N -0.483 5.483 11 Si 0.798 3.202 12 H -0.200 1.200 13 H -0.220 1.220 14 H -0.177 1.177 15 C 0.326 3.674 16 O -0.448 6.448 17 C -0.162 4.162 18 C -0.123 4.123 19 C -0.300 4.300 20 C 0.305 3.695 21 C -0.239 4.239 22 O -0.413 6.413 23 C -0.027 4.027 24 N -0.132 5.132 25 H 0.271 0.729 26 H 0.163 0.837 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.147 0.853 30 H 0.165 0.835 31 H 0.066 0.934 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -5.043 -18.374 -6.290 20.065 hybrid contribution -0.206 1.411 1.179 1.850 sum -5.249 -16.963 -5.111 18.478 Atomic orbital electron populations 1.23544 0.75271 1.05892 1.01939 1.86532 1.24641 1.31957 1.84318 1.25280 0.93651 0.82004 0.73843 1.90856 1.66977 1.37557 1.42859 1.22054 0.86408 0.87454 1.07943 1.43113 1.58646 1.09172 1.05456 1.19435 1.43662 0.96216 0.90114 0.87987 1.26152 0.93262 1.00181 0.99511 1.70092 1.27882 1.12707 1.37587 0.85322 0.78606 0.77240 0.79006 1.19972 1.21957 1.17714 1.17290 0.81697 0.86000 0.82406 1.90613 1.47506 1.20287 1.86359 1.20366 1.08619 0.91782 0.95447 1.21094 1.01016 0.99258 0.90964 1.20546 1.13934 0.99852 0.95637 1.22387 0.74149 0.85685 0.87278 1.22201 1.03525 0.97930 1.00242 1.90523 1.37672 1.36449 1.76662 1.23555 0.97720 1.00213 0.81247 1.42996 1.42038 1.18488 1.09711 0.72902 0.83667 0.93354 0.92411 0.85258 0.83508 0.93448 0.86637 0.86806 0.89293 0.86109 0.73288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.36 -8.89 10.55 -51.39 -0.54 -9.43 16 3 C 0.41 14.47 5.90 71.24 0.42 14.89 16 4 O -0.50 -23.37 16.16 21.96 0.35 -23.01 16 5 C 0.09 3.01 5.47 85.63 0.47 3.47 16 6 N -0.44 -21.89 2.04 -644.07 -1.31 -23.20 16 7 C -0.37 -19.98 9.24 84.10 0.78 -19.20 16 8 H 0.10 5.02 7.91 -2.91 -0.02 5.00 16 9 C 0.02 1.00 4.34 84.95 0.37 1.37 16 10 N -0.85 -53.98 11.48 21.68 0.25 -53.73 16 11 Si 0.97 46.15 29.60 68.60 2.03 48.18 16 12 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 14 H -0.25 -10.83 7.11 99.48 0.71 -10.12 16 15 C 0.54 29.06 6.74 86.46 0.58 29.64 16 16 O -0.57 -36.55 14.51 -4.39 -0.06 -36.62 16 17 C -0.05 -2.25 6.54 39.97 0.26 -1.99 16 18 C -0.10 -4.22 10.38 22.65 0.24 -3.99 16 19 C -0.29 -9.10 6.12 -20.18 -0.12 -9.22 16 20 C 0.42 11.87 7.24 27.87 0.20 12.07 16 21 C -0.18 -2.46 10.02 71.24 0.71 -1.75 16 22 O -0.53 -20.56 17.67 -3.17 -0.06 -20.62 16 23 C 0.11 2.49 11.28 84.43 0.95 3.45 16 24 N -0.53 -15.95 4.80 -183.13 -0.88 -16.83 16 25 H 0.42 11.31 3.62 -92.70 -0.34 10.97 16 26 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 28 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 29 H 0.13 3.54 5.06 -2.38 -0.01 3.53 16 30 H 0.15 4.12 8.06 -2.39 -0.02 4.10 16 31 H 0.26 16.01 8.32 -92.71 -0.77 15.23 16 32 H 0.12 5.65 8.06 -2.91 -0.02 5.62 16 33 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.12 0.68 7.19 -2.39 -0.02 0.67 16 36 H 0.25 1.65 7.49 -2.91 -0.02 1.62 16 Total: -1.00 -94.46 318.35 6.63 -87.83 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.80 Total: 16.97 kcal Atomic # 6 Polarization: 24.41 SS G_CDS: 6.06 Total: 30.46 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -1.94 Total: -93.77 kcal Atomic # 8 Polarization: -89.37 SS G_CDS: -0.31 Total: -89.68 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -94.46 6.63 -87.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348797989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.589 kcal (2) G-P(sol) polarization free energy of solvation -94.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds