Wall clock time and date at job start Tue Mar 31 2020 04:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00208 * 2 1 4 4 O 1.20822 * 120.00022 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99805 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.46947 * 179.97438 * 5 3 2 7 7 C 1.36905 * 119.99841 * 264.48861 * 6 5 3 8 8 H 1.07997 * 119.99822 * 139.00138 * 7 6 5 9 9 C 1.39027 * 119.99772 * 319.00381 * 7 6 5 10 10 N 1.31382 * 119.99655 * 168.68193 * 9 7 6 11 11 Si 1.86790 * 120.00401 * 348.68061 * 9 7 6 12 12 H 1.48502 * 109.47247 * 91.33875 * 11 9 7 13 13 H 1.48492 * 109.47402 * 211.34377 * 11 9 7 14 14 H 1.48508 * 109.47070 * 331.34303 * 11 9 7 15 15 C 1.34777 * 120.00316 * 84.49253 * 6 5 3 16 16 O 1.21626 * 119.99917 * 8.89481 * 15 6 5 17 17 C 1.47419 * 119.99955 * 188.90375 * 15 6 5 18 18 C 1.40045 * 120.60033 * 326.34155 * 17 15 6 19 19 C 1.38328 * 118.34091 * 180.26607 * 18 17 15 20 20 C 1.38363 * 119.46309 * 359.46570 * 19 18 17 21 21 N 1.31899 * 121.20220 * 0.29683 * 20 19 18 22 22 C 1.32222 * 121.80361 * 359.97438 * 21 20 19 23 23 O 1.35425 * 119.80692 * 180.02562 * 22 21 20 24 24 C 1.42905 * 116.99901 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.46905 * 60.00179 * 1 2 3 26 26 H 1.09000 * 109.47457 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46973 * 300.00503 * 1 2 3 28 28 H 1.08995 * 109.47139 * 59.99759 * 5 3 2 29 29 H 1.08998 * 109.46646 * 299.99456 * 5 3 2 30 30 H 0.96997 * 119.99957 * 179.97438 * 10 9 7 31 31 H 1.08001 * 120.83178 * 0.02562 * 18 17 15 32 32 H 1.07996 * 120.26929 * 179.73744 * 19 18 17 33 33 H 1.08000 * 119.40149 * 180.27628 * 20 19 18 34 34 H 1.08999 * 109.47034 * 300.00187 * 24 23 22 35 35 H 1.09004 * 109.47187 * 60.00209 * 24 23 22 36 36 H 1.08997 * 109.47088 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9819 2.6795 -0.0011 7 6 4.2847 3.3033 -1.1815 8 1 3.9594 4.3185 -1.3547 9 6 5.0109 2.6299 -2.1572 10 7 5.1125 3.1347 -3.3660 11 14 5.8424 1.0077 -1.7497 12 1 4.9181 -0.1133 -2.0571 13 1 7.0780 0.8671 -2.5611 14 1 6.1919 0.9794 -0.3066 15 6 4.0660 3.3578 1.1605 16 8 3.9561 2.7680 2.2185 17 6 4.2909 4.8147 1.1487 18 6 5.0760 5.4068 0.1514 19 6 5.2609 6.7771 0.1884 20 6 4.6623 7.5178 1.1922 21 7 3.9225 6.9404 2.1190 22 6 3.7179 5.6342 2.1335 23 8 2.9505 5.0838 3.1042 24 6 2.3972 5.9732 4.0763 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9558 0.7807 -0.8908 29 1 3.9564 0.7804 0.8892 30 1 5.6194 2.6651 -4.0466 31 1 5.5289 4.8079 -0.6248 32 1 5.8639 7.2655 -0.5627 33 1 4.8037 8.5882 1.2175 34 1 3.2037 6.4889 4.5975 35 1 1.7601 6.7045 3.5787 36 1 1.8054 5.4048 4.7936 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348800794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:10 Heat of formation + Delta-G solvation = -106.810027 kcal Electronic energy + Delta-G solvation = -24451.403156 eV Core-core repulsion = 20709.211987 eV Total energy + Delta-G solvation = -3742.191170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.05221 -41.46872 -40.11438 -38.80006 -37.61260 -36.83680 -34.07262 -33.68014 -31.79382 -30.45988 -28.30952 -27.87099 -27.18807 -24.97213 -23.86566 -22.65234 -21.27202 -19.92157 -19.10684 -19.07416 -18.46134 -17.89147 -17.53281 -17.18229 -17.04106 -16.73426 -16.30354 -15.84192 -15.63739 -15.01086 -14.82970 -14.65248 -14.45859 -14.24165 -14.13306 -14.06094 -13.54564 -13.33856 -13.03295 -12.91534 -12.65767 -12.28985 -12.14732 -11.93945 -11.86346 -11.67706 -11.24157 -11.01044 -10.72348 -10.46487 -9.90666 -9.43058 -8.50998 -6.25487 -0.10888 0.38873 1.06304 1.19236 1.32184 1.39784 1.46565 2.02499 2.13853 2.16184 2.40253 2.78927 3.02989 3.38221 3.77034 3.85974 3.97412 4.09725 4.16549 4.17223 4.27090 4.27895 4.39582 4.40874 4.48983 4.61375 4.64392 4.72181 5.14836 5.19577 5.26513 5.34032 5.61364 5.95864 6.09885 6.29616 6.65681 6.79355 6.84133 7.19747 7.55043 8.59487 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.007714 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.776699 B = 3628.871318 C = 5094.973531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.451 3.549 4 O -0.525 6.525 5 C 0.098 3.902 6 N -0.459 5.459 7 C -0.347 4.347 8 H 0.090 0.910 9 C 0.033 3.967 10 N -0.888 5.888 11 Si 0.914 3.086 12 H -0.248 1.248 13 H -0.273 1.273 14 H -0.256 1.256 15 C 0.546 3.454 16 O -0.594 6.594 17 C -0.217 4.217 18 C -0.001 4.001 19 C -0.219 4.219 20 C 0.156 3.844 21 N -0.556 5.556 22 C 0.340 3.660 23 O -0.314 6.314 24 C 0.035 3.965 25 H 0.058 0.942 26 H 0.143 0.857 27 H 0.057 0.943 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.285 0.715 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.207 0.793 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 1.386 5.452 5.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.293 3.707 4 O -0.413 6.413 5 C -0.027 4.027 6 N -0.180 5.180 7 C -0.475 4.475 8 H 0.107 0.893 9 C -0.173 4.173 10 N -0.523 5.523 11 Si 0.738 3.262 12 H -0.174 1.174 13 H -0.199 1.199 14 H -0.179 1.179 15 C 0.338 3.662 16 O -0.478 6.478 17 C -0.223 4.223 18 C -0.026 4.026 19 C -0.239 4.239 20 C 0.000 4.000 21 N -0.281 5.281 22 C 0.161 3.839 23 O -0.220 6.220 24 C -0.059 4.059 25 H 0.077 0.923 26 H 0.161 0.839 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.144 0.856 30 H 0.095 0.905 31 H 0.184 0.816 32 H 0.190 0.810 33 H 0.224 0.776 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.323 1.570 6.487 7.067 hybrid contribution 0.183 -0.928 -0.846 1.270 sum -2.140 0.642 5.640 6.067 Atomic orbital electron populations 1.23581 0.74756 1.05992 1.02214 1.86487 1.25242 1.32164 1.84026 1.24639 0.92858 0.81704 0.71543 1.90610 1.67297 1.37605 1.45762 1.21565 0.87535 0.87618 1.05932 1.43231 1.59258 1.08930 1.06569 1.19087 1.34660 1.01293 0.92419 0.89253 1.25876 0.95852 1.01244 0.94328 1.69703 1.39008 1.41230 1.02399 0.86327 0.79458 0.80329 0.80074 1.17376 1.19869 1.17947 1.18188 0.77634 0.87516 0.82908 1.90620 1.55186 1.70484 1.31506 1.19885 1.08511 0.93815 1.00074 1.22732 0.90361 0.96393 0.93158 1.22362 1.05361 0.93440 1.02739 1.23330 0.87809 1.01822 0.86992 1.67457 1.22348 1.08568 1.29709 1.19913 0.88614 0.88389 0.86996 1.86386 1.61256 1.37130 1.37269 1.23087 0.98626 0.94211 0.89981 0.92343 0.83911 0.92411 0.86785 0.85633 0.90486 0.81632 0.80979 0.77613 0.91580 0.92166 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.94 16 2 O -0.36 -13.13 10.56 -51.35 -0.54 -13.68 16 3 C 0.45 20.11 7.99 71.24 0.57 20.68 16 4 O -0.52 -26.78 16.05 21.98 0.35 -26.42 16 5 C 0.10 4.39 4.44 85.64 0.38 4.77 16 6 N -0.46 -22.95 1.73 -643.33 -1.11 -24.06 16 7 C -0.35 -17.86 6.87 84.09 0.58 -17.28 16 8 H 0.09 4.96 6.05 -2.91 -0.02 4.94 16 9 C 0.03 1.61 5.42 84.95 0.46 2.08 16 10 N -0.89 -45.93 13.95 21.68 0.30 -45.63 16 11 Si 0.91 37.82 24.66 68.60 1.69 39.52 16 12 H -0.25 -9.47 6.68 99.48 0.66 -8.80 16 13 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 14 H -0.26 -10.62 7.00 99.48 0.70 -9.93 16 15 C 0.55 28.07 7.06 86.66 0.61 28.68 16 16 O -0.59 -32.27 15.56 13.04 0.20 -32.06 16 17 C -0.22 -10.05 5.58 -19.91 -0.11 -10.16 16 18 C 0.00 -0.04 7.82 22.73 0.18 0.13 16 19 C -0.22 -6.69 10.09 22.32 0.23 -6.46 16 20 C 0.16 4.40 11.17 84.71 0.95 5.34 16 21 N -0.56 -19.57 9.21 -307.94 -2.84 -22.41 16 22 C 0.34 14.54 7.48 85.15 0.64 15.17 16 23 O -0.31 -13.49 9.10 -70.04 -0.64 -14.12 16 24 C 0.04 1.06 10.38 113.37 1.18 2.24 16 25 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 26 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.06 1.59 8.13 -2.38 -0.02 1.57 16 28 H 0.12 4.86 3.10 -2.39 -0.01 4.86 16 29 H 0.13 5.26 7.48 -2.39 -0.02 5.24 16 30 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.17 7.26 5.39 -2.91 -0.02 7.24 16 32 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.21 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 35 H 0.06 1.70 8.10 -2.38 -0.02 1.68 16 36 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -71.54 311.65 5.35 -66.19 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 1.08 Total: 25.53 kcal Atomic # 6 Polarization: 40.30 SS G_CDS: 6.85 Total: 47.14 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -3.64 Total: -92.10 kcal Atomic # 8 Polarization: -85.66 SS G_CDS: -0.62 Total: -86.29 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 1.69 Total: 39.52 kcal Total: -71.54 5.35 -66.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348800794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.621 kcal (2) G-P(sol) polarization free energy of solvation -71.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds