Wall clock time and date at job start Tue Mar 31 2020 03:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 108.70693 * 2 1 4 4 C 1.54262 * 108.86833 * 118.46106 * 2 1 3 5 5 S 1.83950 * 102.57930 * 145.35064 * 4 2 1 6 6 C 1.83958 * 94.80776 * 325.50666 * 5 4 2 7 7 C 1.52328 * 108.87179 * 241.53907 * 2 1 3 8 8 H 1.08997 * 108.87228 * 118.50034 * 7 2 1 9 9 N 1.46507 * 108.86622 * 0.02562 * 7 2 1 10 10 S 1.65595 * 120.00175 * 145.00359 * 9 7 2 11 11 O 1.42105 * 106.39851 * 311.45620 * 10 9 7 12 12 O 1.42101 * 106.40277 * 178.53875 * 10 9 7 13 13 N 1.65600 * 107.22037 * 64.99316 * 10 9 7 14 14 C 1.46490 * 120.00302 * 270.00076 * 13 10 9 15 15 C 1.46506 * 119.99562 * 90.00260 * 13 10 9 16 16 C 1.50695 * 109.46878 * 95.00145 * 15 13 10 17 17 H 1.08004 * 120.00546 * 0.27446 * 16 15 13 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 15 13 19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46986 * 90.00256 * 20 18 16 22 22 H 1.48496 * 109.47029 * 210.00273 * 20 18 16 23 23 H 1.48499 * 109.47352 * 330.00102 * 20 18 16 24 24 H 1.09002 * 109.46815 * 178.46051 * 1 2 3 25 25 H 1.08999 * 109.47200 * 298.45789 * 1 2 3 26 26 H 1.08997 * 109.46873 * 58.46130 * 1 2 3 27 27 H 1.09005 * 110.78485 * 263.62318 * 4 2 1 28 28 H 1.09001 * 110.78714 * 26.88550 * 4 2 1 29 29 H 1.09004 * 110.78410 * 276.22055 * 6 5 4 30 30 H 1.09005 * 110.78772 * 152.76982 * 6 5 4 31 31 H 0.96999 * 119.99761 * 324.99375 * 9 7 2 32 32 H 1.09003 * 109.47703 * 270.00380 * 14 13 10 33 33 H 1.09005 * 109.46974 * 30.00209 * 14 13 10 34 34 H 1.08997 * 109.47325 * 150.00009 * 14 13 10 35 35 H 1.08992 * 109.47424 * 335.00042 * 15 13 10 36 36 H 1.08997 * 109.46711 * 214.99643 * 15 13 10 37 37 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8796 1.0324 0.0000 4 6 2.0289 -0.6956 1.2833 5 16 3.5560 -1.5461 0.7102 6 6 2.9048 -1.9169 -0.9698 7 6 2.0227 -0.6869 -1.2672 8 1 2.6024 0.0268 -1.8525 9 7 0.8641 -1.1137 -2.0558 10 16 0.9287 -1.0747 -3.7100 11 8 1.4305 0.2075 -4.0618 12 8 -0.3186 -1.5747 -4.1722 13 7 2.0761 -2.1715 -4.1819 14 6 3.4714 -1.7521 -4.3346 15 6 1.6958 -3.5613 -4.4467 16 6 1.4369 -3.7392 -5.9205 17 1 1.5492 -2.9019 -6.5935 18 6 1.0627 -4.9724 -6.4108 19 7 0.9312 -5.9932 -5.5922 20 14 0.7411 -5.1927 -8.2378 21 1 2.0021 -5.5812 -8.9190 22 1 -0.2767 -6.2555 -8.4365 23 1 0.2422 -3.9164 -8.8100 24 1 -0.3633 -1.0273 -0.0276 25 1 -0.3633 0.4897 0.9035 26 1 -0.3633 0.5375 -0.8758 27 1 2.2611 0.0378 2.0556 28 1 1.2939 -1.4153 1.6439 29 1 2.3072 -2.8285 -0.9605 30 1 3.7179 -1.9935 -1.6917 31 1 0.0593 -1.4193 -1.6089 32 1 3.6388 -1.4116 -5.3565 33 1 3.6842 -0.9384 -3.6412 34 1 4.1295 -2.5940 -4.1198 35 1 0.7923 -3.8037 -3.8873 36 1 2.5037 -4.2243 -4.1371 37 1 0.6676 -6.8606 -5.9371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352337356.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:34 Heat of formation + Delta-G solvation = -68.221351 kcal Electronic energy + Delta-G solvation = -20939.930763 eV Core-core repulsion = 17777.609746 eV Total energy + Delta-G solvation = -3162.321017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.51762 -36.63180 -35.56541 -35.23018 -32.76577 -32.44911 -30.02555 -27.82002 -27.09440 -25.10802 -24.20471 -22.34325 -20.01171 -19.24865 -17.60144 -17.05671 -16.52810 -16.34532 -15.83449 -15.48446 -15.08602 -14.42919 -14.34427 -13.93232 -13.49011 -13.37601 -12.90128 -12.49805 -12.45517 -12.23674 -12.16106 -12.00531 -11.67066 -11.53138 -11.46961 -11.23689 -11.20118 -11.12882 -11.02219 -10.71900 -10.55294 -10.21812 -10.03267 -9.79468 -9.46905 -8.46528 -8.11986 -7.86761 -6.08615 -4.12428 1.13519 1.71444 2.11867 3.30508 3.36965 3.41192 3.44959 4.02479 4.24431 4.41673 4.43622 4.53445 4.77602 4.94090 4.97476 5.16165 5.19656 5.26144 5.32567 5.36854 5.47719 5.55510 5.70077 5.84180 5.89554 5.96618 6.05492 6.27028 6.46451 6.97635 7.19310 7.35912 7.55656 7.88738 8.17779 8.89837 9.53004 10.99982 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.024495 B = 0.005015 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.816230 B = 5581.717635 C = 5983.435954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.093 0.907 4 C -0.062 4.062 5 S -0.296 6.296 6 C -0.085 4.085 7 C 0.154 3.846 8 H 0.102 0.898 9 N -1.130 6.130 10 S 2.777 3.223 11 O -0.996 6.996 12 O -0.962 6.962 13 N -0.996 5.996 14 C 0.105 3.895 15 C 0.259 3.741 16 C -0.529 4.529 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.415 0.585 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 10.233 13.808 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 H 0.111 0.889 4 C -0.211 4.211 5 S -0.070 6.070 6 C -0.235 4.235 7 C 0.044 3.956 8 H 0.120 0.880 9 N -0.891 5.891 10 S 2.785 3.215 11 O -0.980 6.980 12 O -0.945 6.945 13 N -0.839 5.839 14 C -0.042 4.042 15 C 0.137 3.863 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.123 0.877 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.253 0.747 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.399 10.406 13.687 17.527 hybrid contribution -1.280 -0.544 -1.130 1.792 sum 2.119 9.862 12.558 16.107 Atomic orbital electron populations 1.21948 0.93742 1.02350 1.02588 1.21815 0.97608 1.00965 0.91685 0.88854 1.24267 0.95933 1.01247 0.99630 1.88037 1.24741 1.76464 1.17726 1.24953 1.02256 1.01741 0.94523 1.21359 0.86067 0.94284 0.93851 0.87979 1.56815 1.22835 1.82135 1.27295 1.02105 0.73613 0.73160 0.72648 1.93542 1.81618 1.40453 1.82339 1.93652 1.42052 1.80601 1.78231 1.57623 1.19381 1.25386 1.81497 1.21274 0.82733 0.99107 1.01069 1.19064 0.96120 0.74331 0.96808 1.21485 1.46504 0.95728 0.93129 0.92195 1.24927 0.95074 0.95728 0.98268 1.69913 1.47725 1.01124 1.34764 0.86512 0.78008 0.78030 0.85008 1.20610 1.21059 1.19714 0.91912 0.92011 0.91300 0.87659 0.88949 0.87757 0.86859 0.74749 0.92922 0.93141 0.91324 0.94467 0.94664 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.64 37.16 0.28 -0.93 16 2 C -0.10 -0.89 3.17 -90.30 -0.29 -1.18 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.06 -0.52 6.92 37.82 0.26 -0.26 16 5 S -0.30 -3.35 23.27 -107.50 -2.50 -5.85 16 6 C -0.08 -0.99 7.11 37.81 0.27 -0.72 16 7 C 0.15 1.76 3.25 -67.62 -0.22 1.54 16 8 H 0.10 1.20 7.09 -51.93 -0.37 0.83 16 9 N -1.13 -15.13 4.52 -4.62 -0.02 -15.15 16 10 S 2.78 51.88 6.03 -107.50 -0.65 51.23 16 11 O -1.00 -19.76 16.52 -57.17 -0.94 -20.70 16 12 O -0.96 -22.14 17.11 -57.17 -0.98 -23.12 16 13 N -1.00 -19.45 3.23 -123.06 -0.40 -19.85 16 14 C 0.10 1.69 9.48 59.84 0.57 2.26 16 15 C 0.26 6.23 5.12 -5.19 -0.03 6.20 16 16 C -0.53 -14.64 9.38 -34.44 -0.32 -14.96 16 17 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 20 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.06 0.51 6.69 -51.93 -0.35 0.16 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.72 7.85 -51.93 -0.41 0.31 16 29 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 30 H 0.11 1.31 6.77 -51.93 -0.35 0.96 16 31 H 0.42 4.91 6.10 -34.47 -0.21 4.70 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.67 6.96 -51.93 -0.36 0.31 16 34 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 35 H 0.04 0.95 7.61 -51.93 -0.40 0.56 16 36 H 0.04 0.86 7.96 -51.93 -0.41 0.45 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 321.74 15.07 4.85 4.85 Total: -1.00 -33.23 321.74 -9.82 -43.05 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.32 Total: 0.35 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 0.43 Total: -6.40 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.32 Total: -60.11 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -1.92 Total: -43.82 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 48.53 SS G_CDS: -3.15 Total: 45.38 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.23 -9.82 -43.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352337356.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.175 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds