Wall clock time and date at job start Tue Mar 31 2020 03:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 108.85022 * 2 1 4 4 C 1.53707 * 108.88591 * 241.43122 * 2 1 3 5 5 S 1.83401 * 104.96737 * 236.37965 * 4 2 1 6 6 C 1.83992 * 95.85058 * 340.24950 * 5 4 2 7 7 C 1.52937 * 108.89055 * 118.44558 * 2 1 3 8 8 H 1.09000 * 109.60143 * 30.96590 * 7 2 1 9 9 N 1.46502 * 109.60516 * 270.82354 * 7 2 1 10 10 S 1.65600 * 119.99701 * 144.99992 * 9 7 2 11 11 O 1.42103 * 106.39773 * 178.54258 * 10 9 7 12 12 O 1.42097 * 106.40267 * 311.45799 * 10 9 7 13 13 N 1.65599 * 107.22118 * 65.00338 * 10 9 7 14 14 C 1.46507 * 119.99636 * 269.99934 * 13 10 9 15 15 C 1.46491 * 120.00355 * 89.99474 * 13 10 9 16 16 C 1.50698 * 109.47103 * 94.99872 * 15 13 10 17 17 H 1.08007 * 120.00095 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00323 * 180.02562 * 16 15 13 19 19 N 1.31522 * 119.99960 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00244 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.46903 * 89.99965 * 20 18 16 22 22 H 1.48499 * 109.46989 * 209.99797 * 20 18 16 23 23 H 1.48496 * 109.46895 * 330.00060 * 20 18 16 24 24 H 1.08997 * 109.47220 * 177.12282 * 1 2 3 25 25 H 1.09002 * 109.47043 * 297.12057 * 1 2 3 26 26 H 1.09001 * 109.47557 * 57.11686 * 1 2 3 27 27 H 1.09004 * 110.34318 * 355.24859 * 4 2 1 28 28 H 1.09002 * 110.34722 * 117.50786 * 4 2 1 29 29 H 1.09000 * 111.13100 * 277.44037 * 6 5 4 30 30 H 1.08992 * 111.16875 * 153.27673 * 6 5 4 31 31 H 0.96993 * 119.99730 * 325.00411 * 9 7 2 32 32 H 1.08995 * 109.47148 * 89.99843 * 14 13 10 33 33 H 1.08994 * 109.46493 * 209.99876 * 14 13 10 34 34 H 1.09003 * 109.47022 * 329.99945 * 14 13 10 35 35 H 1.08996 * 109.47653 * 215.00014 * 15 13 10 36 36 H 1.09001 * 109.47205 * 335.00156 * 15 13 10 37 37 H 0.97002 * 119.99983 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8821 1.0315 0.0000 4 6 2.0275 -0.6955 -1.2772 5 16 3.1090 -2.0537 -0.6864 6 6 3.4013 -1.3464 0.9868 7 6 2.0251 -0.6892 1.2723 8 1 1.3104 -1.4544 1.5755 9 7 2.1655 0.2995 2.3442 10 16 1.8303 -0.1234 3.9098 11 8 2.0921 1.0275 4.7011 12 8 0.5706 -0.7807 3.8870 13 7 2.9445 -1.2632 4.3591 14 6 2.6649 -2.6852 4.1444 15 6 4.2096 -0.8495 4.9709 16 6 4.0828 -0.9027 6.4716 17 1 3.1528 -1.2139 6.9244 18 6 5.1538 -0.5540 7.2668 19 7 6.2864 -0.1755 6.7156 20 14 4.9968 -0.6206 9.1270 21 1 5.3956 -1.9674 9.6095 22 1 5.8815 0.4052 9.7354 23 1 3.5886 -0.3528 9.5148 24 1 -0.3633 -1.0263 -0.0516 25 1 -0.3633 0.4685 0.9147 26 1 -0.3634 0.5579 -0.8630 27 1 1.1864 -1.0989 -1.8412 28 1 2.5968 0.0022 -1.8915 29 1 4.1959 -0.6005 0.9647 30 1 3.6209 -2.1295 1.7123 31 1 2.4547 1.2018 2.1368 32 1 3.0277 -2.9823 3.1605 33 1 3.1690 -3.2741 4.9106 34 1 1.5901 -2.8570 4.2026 35 1 5.0054 -1.5214 4.6496 36 1 4.4468 0.1686 4.6622 37 1 7.0400 0.0694 7.2751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352337358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:41 Heat of formation + Delta-G solvation = -80.339201 kcal Electronic energy + Delta-G solvation = -20817.203678 eV Core-core repulsion = 17654.357191 eV Total energy + Delta-G solvation = -3162.846486 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.20307 -36.63395 -35.56704 -35.24503 -33.22152 -32.46405 -29.60176 -27.81743 -27.33852 -25.11103 -23.62127 -22.34481 -20.67593 -19.05244 -17.41630 -17.28782 -16.59115 -16.33146 -15.91859 -15.22028 -14.76869 -14.43221 -14.23392 -14.07787 -13.62982 -13.37508 -13.19700 -12.47369 -12.36755 -12.14670 -12.08944 -11.91155 -11.81653 -11.65164 -11.52345 -11.23385 -11.18645 -11.10636 -11.01212 -10.73694 -10.55849 -10.23636 -10.05250 -9.79023 -9.47452 -8.47188 -8.12825 -7.85176 -6.09136 -4.13206 1.11063 1.68554 2.13925 3.30128 3.36673 3.40720 3.44435 4.01831 4.28444 4.35512 4.43097 4.53801 4.73515 4.93519 4.97757 5.18423 5.26292 5.29881 5.33545 5.39764 5.48381 5.60658 5.68575 5.72137 5.95161 6.02386 6.08797 6.27279 6.50595 6.97261 7.19857 7.36199 7.55343 7.88233 8.17034 8.89212 9.52356 10.99447 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.026240 B = 0.004882 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.836529 B = 5734.458528 C = 6226.072100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.065 4.065 5 S -0.291 6.291 6 C -0.090 4.090 7 C 0.156 3.844 8 H 0.107 0.893 9 N -1.125 6.125 10 S 2.779 3.221 11 O -0.961 6.961 12 O -0.995 6.995 13 N -0.994 5.994 14 C 0.091 3.909 15 C 0.258 3.742 16 C -0.530 4.530 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.413 0.587 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.751 -1.148 -15.851 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 H 0.106 0.894 4 C -0.214 4.214 5 S -0.065 6.065 6 C -0.240 4.240 7 C 0.045 3.955 8 H 0.125 0.875 9 N -0.882 5.882 10 S 2.787 3.213 11 O -0.945 6.945 12 O -0.979 6.979 13 N -0.837 5.837 14 C -0.056 4.056 15 C 0.136 3.864 16 C -0.569 4.569 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.136 0.864 31 H 0.247 0.753 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.943 -1.941 -15.752 17.748 hybrid contribution 0.279 1.269 1.236 1.793 sum -7.664 -0.673 -14.515 16.428 Atomic orbital electron populations 1.21942 0.93056 1.02828 1.02612 1.21776 0.98062 1.00824 0.91841 0.89412 1.24002 1.00677 0.97426 0.99295 1.87906 1.65734 1.34316 1.18564 1.25133 1.00720 1.03554 0.94550 1.21748 0.95009 0.90560 0.88163 0.87520 1.56465 1.85807 1.20507 1.25389 1.02053 0.73380 0.73538 0.72375 1.93655 1.85406 1.49559 1.65834 1.93531 1.40937 1.76556 1.86837 1.57590 1.35455 1.16316 1.74356 1.21452 1.01201 0.82313 1.00615 1.19055 0.78693 0.95805 0.92850 1.21488 0.98710 1.45437 0.91288 0.92159 1.24928 0.95103 0.94833 0.99116 1.69918 1.02710 1.45204 1.35649 0.86511 0.78261 0.77719 0.85059 1.20594 1.21054 1.19705 0.91752 0.91601 0.92095 0.87929 0.89027 0.88068 0.86374 0.75343 0.94306 0.90126 0.91414 0.94642 0.94447 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.65 37.16 0.32 -0.95 16 2 C -0.10 -0.95 2.89 -90.29 -0.26 -1.21 16 3 H 0.09 0.72 7.74 -51.93 -0.40 0.32 16 4 C -0.07 -0.55 6.99 37.52 0.26 -0.29 16 5 S -0.29 -3.31 23.23 -107.50 -2.50 -5.81 16 6 C -0.09 -1.06 7.15 38.30 0.27 -0.79 16 7 C 0.16 1.82 2.66 -66.82 -0.18 1.64 16 8 H 0.11 1.32 7.19 -51.93 -0.37 0.95 16 9 N -1.12 -15.14 5.56 -3.95 -0.02 -15.16 16 10 S 2.78 51.98 6.08 -107.50 -0.65 51.33 16 11 O -0.96 -22.15 17.11 -57.17 -0.98 -23.13 16 12 O -1.00 -19.60 16.08 -57.17 -0.92 -20.52 16 13 N -0.99 -19.49 3.23 -123.06 -0.40 -19.88 16 14 C 0.09 1.48 10.65 59.85 0.64 2.11 16 15 C 0.26 6.22 5.08 -5.20 -0.03 6.19 16 16 C -0.53 -14.61 9.38 -34.44 -0.32 -14.93 16 17 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.90 -25.80 13.29 55.43 0.74 -25.07 16 20 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 0.75 7.64 -51.93 -0.40 0.35 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.12 1.47 5.79 -51.93 -0.30 1.17 16 31 H 0.41 4.76 8.57 -34.47 -0.30 4.47 16 32 H 0.04 0.52 5.83 -51.93 -0.30 0.22 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.07 1.05 7.02 -51.93 -0.36 0.69 16 35 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 36 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -32.87 324.74 -9.58 -42.44 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.33 Total: 0.84 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 0.61 Total: -6.58 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.32 Total: -60.11 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -1.90 Total: -43.65 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 48.67 SS G_CDS: -3.15 Total: 45.52 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.87 -9.58 -42.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352337358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.895 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds