Wall clock time and date at job start Tue Mar 31 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00013 * 2 1 4 4 H 1.48500 * 109.47266 * 270.00008 * 3 2 1 5 5 H 1.48507 * 109.47096 * 29.99690 * 3 2 1 6 6 H 1.48504 * 109.47437 * 149.99277 * 3 2 1 7 7 C 1.38814 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99464 * 0.02562 * 7 2 1 9 9 N 1.36929 * 120.00200 * 180.02562 * 7 2 1 10 10 S 1.65601 * 120.00240 * 180.02562 * 9 7 2 11 11 O 1.42105 * 106.39895 * 311.46214 * 10 9 7 12 12 O 1.42100 * 106.40432 * 178.54141 * 10 9 7 13 13 C 1.76203 * 107.21804 * 65.00067 * 10 9 7 14 14 C 1.38833 * 119.70733 * 89.99998 * 13 10 9 15 15 C 1.37807 * 120.69476 * 179.70138 * 14 13 10 16 16 C 1.39122 * 119.74516 * 0.27751 * 15 14 13 17 17 N 1.37856 * 120.98014 * 179.97438 * 16 15 14 18 18 H 0.97005 * 119.52103 * 0.02562 * 17 16 15 19 19 C 1.34452 * 120.95653 * 179.97438 * 17 16 15 20 20 O 1.21889 * 119.17397 * 180.02562 * 19 17 16 21 21 C 1.41136 * 121.65362 * 0.04197 * 19 17 16 22 22 C 1.35600 * 120.23476 * 359.97438 * 21 19 17 23 23 C 1.40751 * 119.39540 * 0.02562 * 16 15 14 24 24 C 1.36608 * 119.70381 * 270.28391 * 13 10 9 25 25 H 0.96991 * 120.00193 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00209 * 0.02562 * 9 7 2 27 27 H 1.08002 * 119.65573 * 359.97438 * 14 13 10 28 28 H 1.08001 * 120.13014 * 180.25845 * 15 14 13 29 29 H 1.08000 * 119.88539 * 179.97438 * 21 19 17 30 30 H 1.08001 * 120.73001 * 180.02562 * 22 21 19 31 31 H 1.07990 * 120.14571 * 359.97438 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 16 4.2077 -2.6362 0.0011 11 8 3.6263 -3.4352 1.0223 12 8 5.5885 -2.3023 -0.0330 13 6 3.8532 -3.4432 -1.5246 14 6 4.6614 -3.2117 -2.6295 15 6 4.4064 -3.8367 -3.8309 16 6 3.3248 -4.7048 -3.9415 17 7 3.0461 -5.3431 -5.1311 18 1 3.6125 -5.1851 -5.9026 19 6 2.0010 -6.1823 -5.2374 20 8 1.7847 -6.7298 -6.3047 21 6 1.1479 -6.4450 -4.1441 22 6 1.3688 -5.8479 -2.9468 23 6 2.5040 -4.9321 -2.8210 24 6 2.7820 -4.2866 -1.6114 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3620 0.0014 27 1 5.5013 -2.5381 -2.5454 28 1 5.0435 -3.6532 -4.6834 29 1 0.3163 -7.1241 -4.2614 30 1 0.7213 -6.0435 -2.1048 31 1 2.1557 -4.4583 -0.7486 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359485469.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:21 Heat of formation + Delta-G solvation = -61.548573 kcal Electronic energy + Delta-G solvation = -20843.656891 eV Core-core repulsion = 17410.348182 eV Total energy + Delta-G solvation = -3433.308709 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.051 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.28194 -38.64943 -36.36545 -35.52934 -34.96812 -34.83285 -34.15862 -31.62171 -30.35809 -29.62407 -24.34389 -24.23406 -23.52249 -22.98370 -19.48922 -18.67563 -18.33362 -18.20812 -17.55170 -16.56001 -16.08153 -15.56626 -15.52062 -15.15713 -14.79781 -14.15175 -14.06654 -13.75878 -13.31786 -13.19227 -12.81092 -12.77191 -12.59227 -11.56747 -11.44597 -11.29250 -11.20737 -11.19664 -11.09840 -10.65698 -10.52735 -10.50458 -10.28476 -10.20322 -10.11207 -8.69705 -8.57850 -8.23011 -6.53010 -4.03249 0.43425 0.84388 1.30460 1.74689 2.79850 2.91799 3.03887 3.07014 3.12231 3.74386 4.00484 4.08205 4.38415 4.44412 4.54937 4.58902 4.89982 4.96453 5.02781 5.27516 5.40241 5.45610 5.67016 5.77856 5.91259 6.04438 6.12821 6.29430 6.49863 6.67748 6.72116 6.91619 7.49637 7.84475 8.14185 8.78382 8.92798 10.57291 Molecular weight = 294.05amu Principal moments of inertia in cm(-1) A = 0.018548 B = 0.005267 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.216278 B = 5315.222924 C = 5890.253345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.050 3.950 3 Si 0.883 3.117 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.284 4.284 8 H 0.122 0.878 9 N -0.976 5.976 10 S 2.629 3.371 11 O -0.961 6.961 12 O -0.998 6.998 13 C -0.690 4.690 14 C 0.025 3.975 15 C -0.190 4.190 16 C 0.218 3.782 17 N -0.631 5.631 18 H 0.414 0.586 19 C 0.539 3.461 20 O -0.548 6.548 21 C -0.235 4.235 22 C 0.004 3.996 23 C -0.159 4.159 24 C 0.057 3.943 25 H 0.277 0.723 26 H 0.391 0.609 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -5.603 -5.817 9.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.158 4.158 3 Si 0.709 3.291 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.422 4.422 8 H 0.139 0.861 9 N -0.728 5.728 10 S 2.720 3.280 11 O -0.951 6.951 12 O -0.987 6.987 13 C -0.772 4.772 14 C 0.005 3.995 15 C -0.211 4.211 16 C 0.115 3.885 17 N -0.268 5.268 18 H 0.252 0.748 19 C 0.336 3.664 20 O -0.429 6.429 21 C -0.255 4.255 22 C -0.016 4.016 23 C -0.162 4.162 24 C 0.037 3.963 25 H 0.087 0.913 26 H 0.226 0.774 27 H 0.162 0.838 28 H 0.154 0.846 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.347 -6.510 -5.743 10.196 hybrid contribution 0.359 1.340 -1.191 1.829 sum 5.706 -5.169 -6.934 10.362 Atomic orbital electron populations 1.69707 1.05758 1.28226 1.47039 1.25104 0.95388 0.98532 0.96801 0.86563 0.80217 0.83220 0.79127 1.19491 1.20038 1.18837 1.19025 0.78376 0.96953 1.47882 0.86065 1.52225 1.15653 1.21312 1.83583 1.05779 0.72791 0.73351 0.76128 1.93505 1.78494 1.68997 1.54134 1.93435 1.33457 1.83820 1.87981 1.31630 1.05795 1.14767 1.24961 1.20816 0.95395 0.93174 0.90083 1.20758 0.98960 1.01622 0.99791 1.18090 0.93942 0.91471 0.85046 1.43532 1.29360 1.41595 1.12361 0.74805 1.17173 0.80567 0.78740 0.89915 1.90933 1.72051 1.50486 1.29480 1.22092 1.03571 1.07033 0.92845 1.22772 0.92325 0.88846 0.97686 1.18784 0.98823 1.04563 0.94053 1.20767 0.92054 0.87709 0.95725 0.91256 0.77426 0.83846 0.84581 0.82813 0.83141 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.57 13.97 55.49 0.78 -21.80 16 2 C 0.05 1.23 5.50 -17.43 -0.10 1.13 16 3 Si 0.88 18.25 27.74 -169.99 -4.71 13.53 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.12 6.52 56.52 0.37 -4.75 16 7 C -0.28 -6.70 10.12 -15.06 -0.15 -6.86 16 8 H 0.12 2.96 8.05 -52.48 -0.42 2.53 16 9 N -0.98 -20.29 5.55 31.50 0.17 -20.12 16 10 S 2.63 50.67 5.69 -107.50 -0.61 50.06 16 11 O -0.96 -20.88 16.95 -57.17 -0.97 -21.85 16 12 O -1.00 -20.11 17.25 -57.17 -0.99 -21.09 16 13 C -0.69 -11.50 5.85 -39.95 -0.23 -11.73 16 14 C 0.03 0.36 9.49 -39.52 -0.37 -0.01 16 15 C -0.19 -2.36 9.92 -39.41 -0.39 -2.75 16 16 C 0.22 2.91 6.65 -83.88 -0.56 2.36 16 17 N -0.63 -7.81 5.30 -12.61 -0.07 -7.87 16 18 H 0.41 4.10 8.77 -40.82 -0.36 3.74 16 19 C 0.54 7.70 7.66 -15.31 -0.12 7.58 16 20 O -0.55 -9.41 17.87 5.02 0.09 -9.32 16 21 C -0.23 -2.90 9.91 -39.43 -0.39 -3.29 16 22 C 0.00 0.05 10.10 -37.24 -0.38 -0.33 16 23 C -0.16 -2.26 5.87 -105.04 -0.62 -2.88 16 24 C 0.06 0.90 9.25 -39.55 -0.37 0.53 16 25 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 26 H 0.39 7.64 5.88 -34.47 -0.20 7.44 16 27 H 0.14 1.83 7.58 -52.49 -0.40 1.43 16 28 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.15 2.29 7.57 -52.49 -0.40 1.89 16 LS Contribution 291.70 15.07 4.40 4.40 Total: -1.00 -31.27 291.70 -7.80 -39.07 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -2.22 Total: 11.24 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -3.67 Total: -16.24 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.88 Total: -49.79 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -1.87 Total: -52.26 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -4.71 Total: 13.53 kcal Atomic # 16 Polarization: 50.67 SS G_CDS: -0.61 Total: 50.06 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.27 -7.80 -39.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359485469.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.481 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds