Wall clock time and date at job start Tue Mar 31 2020 03:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46843 * 2 1 4 4 C 1.53244 * 109.46584 * 119.98312 * 2 1 3 5 5 S 1.81742 * 108.79346 * 177.66115 * 4 2 1 6 6 C 1.81736 * 102.30964 * 305.45930 * 5 4 2 7 7 C 1.52722 * 108.84095 * 54.42788 * 6 5 4 8 8 N 1.46374 * 109.46971 * 239.99981 * 2 1 3 9 9 S 1.65600 * 119.64690 * 354.90985 * 8 2 1 10 10 O 1.42102 * 106.40325 * 156.68711 * 9 8 2 11 11 O 1.42104 * 106.40278 * 23.76621 * 9 8 2 12 12 N 1.65600 * 107.21898 * 270.22507 * 9 8 2 13 13 C 1.46498 * 119.99803 * 97.58462 * 12 9 8 14 14 C 1.46496 * 120.00241 * 277.58769 * 12 9 8 15 15 C 1.50696 * 109.47260 * 265.08244 * 14 12 9 16 16 H 1.08004 * 119.99872 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00595 * 179.97438 * 15 14 12 18 18 N 1.31522 * 119.99653 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00294 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47303 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47102 * 120.00413 * 19 17 15 22 22 H 1.48504 * 109.47203 * 239.99957 * 19 17 15 23 23 H 1.09010 * 109.47121 * 172.36092 * 1 2 3 24 24 H 1.08997 * 109.47470 * 292.35885 * 1 2 3 25 25 H 1.08994 * 109.47203 * 52.36637 * 1 2 3 26 26 H 1.08992 * 109.58381 * 297.45598 * 4 2 1 27 27 H 1.08995 * 109.58067 * 57.86861 * 4 2 1 28 28 H 1.09004 * 109.58202 * 174.33330 * 6 5 4 29 29 H 1.08999 * 109.58708 * 294.60978 * 6 5 4 30 30 H 1.08994 * 109.33255 * 182.43058 * 7 6 5 31 31 H 1.09006 * 109.32698 * 62.60931 * 7 6 5 32 32 H 1.08994 * 109.47285 * 83.94912 * 13 12 9 33 33 H 1.08998 * 109.47310 * 323.94479 * 13 12 9 34 34 H 1.09006 * 109.46970 * 203.95068 * 13 12 9 35 35 H 1.09008 * 109.47036 * 25.07635 * 14 12 9 36 36 H 1.09001 * 109.47629 * 145.07618 * 14 12 9 37 37 H 0.96995 * 119.99819 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0407 -0.7221 1.2515 5 16 3.8566 -0.7725 1.1983 6 6 4.1757 -1.5417 -0.4169 7 6 3.4494 -0.7418 -1.4963 8 7 2.0179 -0.6900 -1.1952 9 16 0.9393 -1.4257 -2.2139 10 8 1.5770 -1.5091 -3.4811 11 8 -0.3089 -0.7769 -2.0132 12 7 0.7477 -2.9827 -1.6836 13 6 -0.3942 -3.3321 -0.8349 14 6 1.7200 -4.0107 -2.0630 15 6 1.2251 -4.7446 -3.2826 16 1 0.2804 -4.4727 -3.7301 17 6 1.9780 -5.7631 -3.8273 18 7 3.1281 -6.0945 -3.2820 19 14 1.3641 -6.6731 -5.3386 20 1 0.0526 -6.1143 -5.7542 21 1 2.3432 -6.5141 -6.4438 22 1 1.2084 -8.1150 -5.0190 23 1 -0.3634 -1.0186 -0.1366 24 1 -0.3634 0.3909 0.9504 25 1 -0.3633 0.6275 -0.8138 26 1 1.7160 -0.1838 2.1419 27 1 1.6474 -1.7384 1.2729 28 1 5.2472 -1.5393 -0.6174 29 1 3.8072 -2.5675 -0.4123 30 1 3.6000 -1.2213 -2.4635 31 1 3.8512 0.2710 -1.5265 32 1 -1.2642 -3.5315 -1.4604 33 1 -0.6132 -2.5037 -0.1613 34 1 -0.1546 -4.2212 -0.2515 35 1 2.6778 -3.5403 -2.2858 36 1 1.8438 -4.7151 -1.2404 37 1 3.6576 -6.8113 -3.6650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408202807.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:47 Heat of formation + Delta-G solvation = -44.462907 kcal Electronic energy + Delta-G solvation = -21652.507508 eV Core-core repulsion = 18491.216735 eV Total energy + Delta-G solvation = -3161.290773 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.08135 -36.95565 -35.59016 -35.26048 -32.81771 -32.48514 -29.31856 -27.91642 -27.21845 -25.12260 -23.08099 -22.37010 -21.80803 -18.53286 -17.39317 -17.02129 -16.47397 -16.25992 -15.86876 -15.08303 -14.66895 -14.41702 -14.30936 -13.76622 -13.63819 -13.37274 -13.20949 -12.99563 -12.53949 -12.41340 -12.17266 -12.05668 -11.74648 -11.34964 -11.27396 -11.17256 -11.00778 -10.86223 -10.66782 -10.50173 -10.26137 -10.02941 -9.79103 -9.59442 -9.18186 -8.50062 -8.12458 -7.64255 -6.12103 -4.15778 1.08175 1.79479 2.52490 3.27707 3.29757 3.35568 3.41401 3.97535 4.40596 4.62364 4.64781 4.82877 5.01013 5.06773 5.13902 5.21763 5.27854 5.37925 5.45561 5.61025 5.67091 5.74702 5.85192 5.95013 6.03068 6.15506 6.28568 6.40899 6.62287 6.69368 7.10138 7.29655 7.51222 7.85796 8.13719 8.86942 9.49917 10.96367 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.006462 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.703611 B = 4331.914736 C = 4927.894841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.152 3.848 3 H 0.088 0.912 4 C -0.096 4.096 5 S -0.268 6.268 6 C -0.099 4.099 7 C 0.118 3.882 8 N -1.008 6.008 9 S 2.772 3.228 10 O -0.963 6.963 11 O -0.988 6.988 12 N -0.997 5.997 13 C 0.102 3.898 14 C 0.259 3.741 15 C -0.526 4.526 16 H 0.061 0.939 17 C 0.062 3.938 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.283 1.283 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 10.789 9.534 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.044 3.956 3 H 0.106 0.894 4 C -0.246 4.246 5 S -0.040 6.040 6 C -0.249 4.249 7 C -0.010 4.010 8 N -0.846 5.846 9 S 2.782 3.218 10 O -0.946 6.946 11 O -0.972 6.972 12 N -0.840 5.840 13 C -0.044 4.044 14 C 0.137 3.863 15 C -0.566 4.566 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.210 1.210 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.119 0.881 26 H 0.129 0.871 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.650 11.399 9.539 14.878 hybrid contribution -0.755 -1.368 -1.269 2.013 sum -1.405 10.031 8.270 13.076 Atomic orbital electron populations 1.23026 0.91663 1.05977 1.03103 1.21061 0.95256 0.96156 0.83111 0.89422 1.23960 0.93957 1.04950 1.01687 1.86621 1.08229 1.81920 1.27244 1.23833 1.04772 1.02732 0.93548 1.21378 0.79527 1.01364 0.98696 1.58312 1.18108 1.69153 1.39002 1.02416 0.73345 0.72625 0.73368 1.93605 1.76898 1.86354 1.37746 1.93697 1.43235 1.74174 1.86104 1.57709 1.35025 1.26033 1.65214 1.21411 0.88653 1.00593 0.93786 1.19053 0.85731 0.85578 0.95912 1.21507 1.06268 1.16925 1.11886 0.92124 1.24929 0.94792 0.96927 0.97385 1.69919 1.12539 1.30260 1.40796 0.86455 0.79108 0.79216 0.82764 1.19653 1.20761 1.20952 0.90373 0.92179 0.88052 0.87131 0.89284 0.86695 0.88520 0.87232 0.89970 0.93154 0.92496 0.91156 0.95034 0.94811 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 7.45 37.16 0.28 -1.93 16 2 C 0.15 1.88 3.35 -67.87 -0.23 1.66 16 3 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.10 -1.10 5.94 37.28 0.22 -0.88 16 5 S -0.27 -3.44 22.29 -107.50 -2.40 -5.84 16 6 C -0.10 -1.34 6.65 37.01 0.25 -1.09 16 7 C 0.12 1.66 6.21 -4.25 -0.03 1.64 16 8 N -1.01 -15.15 3.16 -107.50 -0.34 -15.49 16 9 S 2.77 52.74 5.59 -107.50 -0.60 52.14 16 10 O -0.96 -22.31 15.88 -57.17 -0.91 -23.22 16 11 O -0.99 -18.52 11.76 -57.17 -0.67 -19.19 16 12 N -1.00 -19.81 3.23 -123.06 -0.40 -20.21 16 13 C 0.10 1.68 10.25 59.85 0.61 2.29 16 14 C 0.26 6.21 5.10 -5.20 -0.03 6.19 16 15 C -0.53 -14.49 9.38 -34.44 -0.32 -14.81 16 16 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.90 -25.44 13.29 55.43 0.74 -24.71 16 19 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.08 1.06 3.03 -51.92 -0.16 0.91 16 24 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 25 H 0.10 1.42 6.40 -51.93 -0.33 1.08 16 26 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.10 1.48 8.12 -51.93 -0.42 1.06 16 30 H 0.11 1.74 6.80 -51.93 -0.35 1.39 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.78 4.98 -51.93 -0.26 0.52 16 34 H 0.07 1.09 7.88 -51.93 -0.41 0.69 16 35 H 0.03 0.79 7.80 -51.92 -0.40 0.38 16 36 H 0.03 0.83 7.94 -51.93 -0.41 0.42 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 311.92 15.07 4.70 4.70 Total: -1.00 -31.43 311.92 -9.49 -40.92 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.25 Total: -0.39 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 0.66 Total: -5.32 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.00 Total: -60.40 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -1.58 Total: -42.41 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 49.30 SS G_CDS: -3.00 Total: 46.30 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.43 -9.49 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408202807.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.538 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds