Wall clock time and date at job start Tue Mar 31 2020 03:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46843 * 2 1 4 4 C 1.53244 * 109.46584 * 119.98312 * 2 1 3 5 5 S 1.81742 * 108.79346 * 177.66115 * 4 2 1 6 6 C 1.81736 * 102.30964 * 305.45930 * 5 4 2 7 7 C 1.52722 * 108.84095 * 54.42788 * 6 5 4 8 8 N 1.46374 * 109.46971 * 239.99981 * 2 1 3 9 9 S 1.65600 * 119.64690 * 354.90985 * 8 2 1 10 10 O 1.42102 * 106.40325 * 156.68711 * 9 8 2 11 11 O 1.42104 * 106.40278 * 23.76621 * 9 8 2 12 12 N 1.65600 * 107.21898 * 270.22507 * 9 8 2 13 13 C 1.46498 * 119.99803 * 97.58462 * 12 9 8 14 14 C 1.46496 * 120.00241 * 277.58769 * 12 9 8 15 15 C 1.50696 * 109.47260 * 265.08244 * 14 12 9 16 16 H 1.08004 * 119.99872 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00595 * 179.97438 * 15 14 12 18 18 N 1.31522 * 119.99653 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00294 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47303 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47102 * 120.00413 * 19 17 15 22 22 H 1.48504 * 109.47203 * 239.99957 * 19 17 15 23 23 H 1.09010 * 109.47121 * 172.36092 * 1 2 3 24 24 H 1.08997 * 109.47470 * 292.35885 * 1 2 3 25 25 H 1.08994 * 109.47203 * 52.36637 * 1 2 3 26 26 H 1.08992 * 109.58381 * 297.45598 * 4 2 1 27 27 H 1.08995 * 109.58067 * 57.86861 * 4 2 1 28 28 H 1.09004 * 109.58202 * 174.33330 * 6 5 4 29 29 H 1.08999 * 109.58708 * 294.60978 * 6 5 4 30 30 H 1.08994 * 109.33255 * 182.43058 * 7 6 5 31 31 H 1.09006 * 109.32698 * 62.60931 * 7 6 5 32 32 H 1.08994 * 109.47285 * 83.94912 * 13 12 9 33 33 H 1.08998 * 109.47310 * 323.94479 * 13 12 9 34 34 H 1.09006 * 109.46970 * 203.95068 * 13 12 9 35 35 H 1.09008 * 109.47036 * 25.07635 * 14 12 9 36 36 H 1.09001 * 109.47629 * 145.07618 * 14 12 9 37 37 H 0.96995 * 119.99819 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0407 -0.7221 1.2515 5 16 3.8566 -0.7725 1.1983 6 6 4.1757 -1.5417 -0.4169 7 6 3.4494 -0.7418 -1.4963 8 7 2.0179 -0.6900 -1.1952 9 16 0.9393 -1.4257 -2.2139 10 8 1.5770 -1.5091 -3.4811 11 8 -0.3089 -0.7769 -2.0132 12 7 0.7477 -2.9827 -1.6836 13 6 -0.3942 -3.3321 -0.8349 14 6 1.7200 -4.0107 -2.0630 15 6 1.2251 -4.7446 -3.2826 16 1 0.2804 -4.4727 -3.7301 17 6 1.9780 -5.7631 -3.8273 18 7 3.1281 -6.0945 -3.2820 19 14 1.3641 -6.6731 -5.3386 20 1 0.0526 -6.1143 -5.7542 21 1 2.3432 -6.5141 -6.4438 22 1 1.2084 -8.1150 -5.0190 23 1 -0.3634 -1.0186 -0.1366 24 1 -0.3634 0.3909 0.9504 25 1 -0.3633 0.6275 -0.8138 26 1 1.7160 -0.1838 2.1419 27 1 1.6474 -1.7384 1.2729 28 1 5.2472 -1.5393 -0.6174 29 1 3.8072 -2.5675 -0.4123 30 1 3.6000 -1.2213 -2.4635 31 1 3.8512 0.2710 -1.5265 32 1 -1.2642 -3.5315 -1.4604 33 1 -0.6132 -2.5037 -0.1613 34 1 -0.1546 -4.2212 -0.2515 35 1 2.6778 -3.5403 -2.2858 36 1 1.8438 -4.7151 -1.2404 37 1 3.6576 -6.8113 -3.6650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408202807.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:47 Heat of formation + Delta-G solvation = -65.954630 kcal Electronic energy + Delta-G solvation = -21653.439459 eV Core-core repulsion = 18491.216735 eV Total energy + Delta-G solvation = -3162.222724 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.27524 -38.41632 -37.25824 -36.87233 -34.53622 -33.89171 -30.45336 -29.72685 -28.23618 -26.78534 -24.36539 -24.06018 -22.94963 -19.94368 -18.95924 -18.57225 -18.14402 -17.59556 -17.07256 -16.75401 -16.11992 -15.73492 -15.40972 -15.14863 -15.03717 -14.81707 -14.53558 -14.18666 -14.05005 -13.97637 -13.56228 -13.35998 -13.10883 -13.02421 -12.90488 -12.71685 -12.54470 -12.43265 -12.19232 -12.00851 -11.76646 -11.64395 -11.40009 -10.70797 -10.61422 -10.32958 -9.80302 -8.66200 -8.22841 -6.33997 -0.39234 0.79545 1.36148 1.38796 1.50029 1.51601 1.92689 2.37552 2.54021 3.07832 3.35366 3.47905 3.69566 3.87324 4.01402 4.07657 4.16674 4.29631 4.38334 4.53388 4.59394 4.69559 4.73850 4.77673 4.85475 4.97474 5.01521 5.13088 5.16412 5.39588 5.54050 5.62142 5.68519 5.92546 6.08551 6.73613 7.34871 8.84336 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.006462 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.703611 B = 4331.914736 C = 4927.894841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.149 3.851 3 H 0.110 0.890 4 C -0.092 4.092 5 S -0.266 6.266 6 C -0.098 4.098 7 C 0.116 3.884 8 N -1.001 6.001 9 S 2.782 3.218 10 O -1.011 7.011 11 O -0.987 6.987 12 N -1.004 6.004 13 C 0.094 3.906 14 C 0.277 3.723 15 C -0.547 4.547 16 H 0.048 0.952 17 C 0.015 3.985 18 N -0.921 5.921 19 Si 0.953 3.047 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.270 1.270 23 H 0.063 0.937 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.143 0.857 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.016 0.984 36 H 0.024 0.976 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.598 11.809 10.910 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.042 3.958 3 H 0.128 0.872 4 C -0.242 4.242 5 S -0.038 6.038 6 C -0.248 4.248 7 C -0.011 4.011 8 N -0.841 5.841 9 S 2.793 3.207 10 O -0.995 6.995 11 O -0.971 6.971 12 N -0.845 5.845 13 C -0.051 4.051 14 C 0.153 3.847 15 C -0.587 4.587 16 H 0.066 0.934 17 C -0.185 4.185 18 N -0.560 5.560 19 Si 0.778 3.222 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.195 1.195 23 H 0.082 0.918 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.161 0.839 27 H 0.101 0.899 28 H 0.148 0.852 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.034 0.966 36 H 0.042 0.958 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.110 12.417 10.929 16.579 hybrid contribution -0.637 -1.595 -1.606 2.351 sum -1.747 10.822 9.323 14.391 Atomic orbital electron populations 1.22959 0.91431 1.04845 1.04528 1.21352 0.95430 0.96962 0.82046 0.87226 1.24042 0.92725 1.05022 1.02403 1.86629 1.09585 1.81392 1.26204 1.23754 1.05573 1.01248 0.94250 1.21474 0.79066 1.02742 0.97828 1.58019 1.17893 1.68591 1.39614 1.01975 0.73436 0.72421 0.72878 1.93538 1.77883 1.86949 1.41105 1.93725 1.43572 1.73735 1.86067 1.57628 1.35319 1.25725 1.65844 1.21641 0.87248 1.02403 0.93840 1.18584 0.85932 0.85851 0.94332 1.21828 1.05961 1.17633 1.13254 0.93412 1.25684 0.95037 0.97763 1.00026 1.69995 1.13290 1.30781 1.41967 0.85589 0.78466 0.78621 0.79541 1.19718 1.20383 1.19499 0.91832 0.88473 0.89662 0.83926 0.89911 0.85193 0.91022 0.89688 0.87230 0.93723 0.89227 0.90489 0.96590 0.95754 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.88 7.45 71.98 0.54 -3.34 16 2 C 0.15 3.26 3.35 45.10 0.15 3.41 16 3 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.09 -1.82 5.94 72.06 0.43 -1.40 16 5 S -0.27 -6.22 22.29 -56.49 -1.26 -7.48 16 6 C -0.10 -2.60 6.65 71.89 0.48 -2.12 16 7 C 0.12 3.22 6.21 86.31 0.54 3.76 16 8 N -1.00 -29.08 3.16 -494.02 -1.56 -30.64 16 9 S 2.78 106.34 5.59 -56.49 -0.32 106.02 16 10 O -1.01 -48.37 15.88 -128.00 -2.03 -50.40 16 11 O -0.99 -36.32 11.76 -128.00 -1.50 -37.83 16 12 N -1.00 -40.34 3.23 -543.24 -1.75 -42.09 16 13 C 0.09 3.04 10.25 127.77 1.31 4.35 16 14 C 0.28 13.66 5.10 85.63 0.44 14.10 16 15 C -0.55 -30.84 9.38 25.60 0.24 -30.60 16 16 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 17 C 0.01 0.82 5.46 84.65 0.46 1.28 16 18 N -0.92 -52.99 13.29 21.45 0.28 -52.71 16 19 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H 0.06 1.57 3.03 -2.38 -0.01 1.57 16 24 H 0.10 1.42 8.13 -2.39 -0.02 1.40 16 25 H 0.08 2.19 6.40 -2.39 -0.02 2.17 16 26 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 30 H 0.08 2.81 6.80 -2.39 -0.02 2.79 16 31 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.09 2.29 4.98 -2.39 -0.01 2.28 16 34 H 0.08 2.36 7.88 -2.38 -0.02 2.34 16 35 H 0.02 0.84 7.80 -2.38 -0.02 0.82 16 36 H 0.02 1.23 7.94 -2.39 -0.02 1.22 16 37 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -68.14 311.92 -0.47 -68.61 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.07 Total: 10.50 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.58 Total: -10.57 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -3.03 Total: -125.44 kcal Atomic # 8 Polarization: -84.69 SS G_CDS: -3.54 Total: -88.23 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 100.11 SS G_CDS: -1.58 Total: 98.54 kcal Total: -68.14 -0.47 -68.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408202807.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.660 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds