Wall clock time and date at job start Tue Mar 31 2020 03:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.99783 * 2 1 4 4 C 1.55160 * 111.13045 * 124.25871 * 2 1 3 5 5 C 1.52943 * 108.95876 * 159.35007 * 4 2 1 6 6 H 1.09004 * 108.77192 * 209.18699 * 5 4 2 7 7 N 1.46497 * 108.89016 * 90.69628 * 5 4 2 8 8 S 1.65596 * 120.00232 * 140.56087 * 7 5 4 9 9 O 1.42097 * 106.40349 * 311.46356 * 8 7 5 10 10 O 1.42105 * 106.40237 * 178.53923 * 8 7 5 11 11 N 1.65597 * 107.21591 * 65.00210 * 8 7 5 12 12 C 1.46503 * 120.00274 * 269.99752 * 11 8 7 13 13 C 1.46503 * 120.00302 * 89.99833 * 11 8 7 14 14 C 1.50699 * 109.46825 * 94.99719 * 13 11 8 15 15 H 1.07999 * 120.00803 * 0.02562 * 14 13 11 16 16 C 1.37881 * 119.99889 * 180.02562 * 14 13 11 17 17 N 1.31520 * 120.00186 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 C 1.53712 * 112.49003 * 329.89656 * 5 4 2 23 23 S 1.83394 * 104.96904 * 2.83106 * 22 5 4 24 24 H 1.09006 * 109.47185 * 182.76253 * 1 2 3 25 25 H 1.08999 * 109.47461 * 302.75679 * 1 2 3 26 26 H 1.09003 * 109.47381 * 62.76282 * 1 2 3 27 27 H 1.09003 * 109.60459 * 39.42132 * 4 2 1 28 28 H 1.08990 * 109.60397 * 279.27923 * 4 2 1 29 29 H 0.97005 * 119.99673 * 320.56574 * 7 5 4 30 30 H 1.09000 * 109.47316 * 270.00561 * 12 11 8 31 31 H 1.09008 * 109.46722 * 30.00089 * 12 11 8 32 32 H 1.09000 * 109.47185 * 149.99775 * 12 11 8 33 33 H 1.09004 * 109.46958 * 335.00131 * 13 11 8 34 34 H 1.08997 * 109.47731 * 214.99806 * 13 11 8 35 35 H 0.96998 * 120.00124 * 180.02562 * 17 16 14 36 36 H 1.09007 * 110.33354 * 121.69981 * 22 5 4 37 37 H 1.08993 * 110.34204 * 243.84497 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0176 0.0000 4 6 2.0893 -0.8147 1.1962 5 6 3.5309 -1.2226 0.8888 6 1 3.7477 -2.1591 1.4028 7 7 4.4349 -0.1857 1.3928 8 16 5.8640 -0.6117 2.1129 9 8 5.5496 -1.6204 3.0630 10 8 6.5181 0.6023 2.4557 11 7 6.7997 -1.3360 0.9544 12 6 6.7221 -2.7846 0.7502 13 6 7.7052 -0.5282 0.1336 14 6 9.0833 -0.5425 0.7434 15 1 9.2665 -1.0980 1.6512 16 6 10.1104 0.1538 0.1422 17 7 11.3132 0.1410 0.6741 18 14 9.7936 1.1154 -1.4276 19 1 9.3864 2.5019 -1.0852 20 1 8.7096 0.4578 -2.2007 21 1 11.0329 1.1511 -2.2449 22 6 3.7804 -1.4116 -0.6161 23 16 2.1932 -0.9650 -1.4191 24 1 -0.3634 -1.0265 0.0495 25 1 -0.3634 0.5560 0.8642 26 1 -0.3634 0.4703 -0.9137 27 1 1.4812 -1.7067 1.3474 28 1 2.0667 -0.2028 2.0978 29 1 4.1962 0.7504 1.3048 30 1 7.4513 -3.2814 1.3901 31 1 5.7205 -3.1338 1.0016 32 1 6.9364 -3.0165 -0.2931 33 1 7.3381 0.4973 0.0893 34 1 7.7494 -0.9421 -0.8738 35 1 12.0357 0.6311 0.2514 36 1 4.5762 -0.7480 -0.9545 37 1 4.0365 -2.4492 -0.8303 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416589389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:08 Heat of formation + Delta-G solvation = -102.316632 kcal Electronic energy + Delta-G solvation = -20699.978100 eV Core-core repulsion = 17536.178601 eV Total energy + Delta-G solvation = -3163.799499 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.86061 -38.21438 -37.29605 -36.90245 -34.53791 -34.39477 -31.06010 -30.27858 -27.76558 -26.81026 -24.05128 -23.85361 -21.56009 -20.61230 -19.20889 -18.72491 -18.32589 -17.78792 -17.20017 -16.56531 -16.05731 -15.96629 -15.67615 -15.24852 -14.71755 -14.52675 -14.45903 -14.18804 -13.70964 -13.50283 -13.38866 -13.28905 -13.20227 -13.16362 -13.02197 -12.95310 -12.38739 -12.35002 -12.25590 -12.07498 -12.01901 -11.74859 -11.70615 -11.14885 -10.78413 -10.50325 -9.80769 -8.69429 -8.29026 -6.34774 -0.41516 0.87256 1.36052 1.37118 1.40390 1.48514 1.97215 2.34942 2.60501 3.05083 3.36081 3.42809 3.65529 3.80401 3.94744 4.03423 4.14177 4.23803 4.42599 4.57039 4.62476 4.74732 4.78812 4.84338 4.86999 4.96229 5.04063 5.07079 5.12004 5.29869 5.32897 5.48530 5.67960 6.02884 6.30523 6.68790 7.28264 8.88727 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.005312 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.549735 B = 5269.597614 C = 5880.887368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.032 4.032 3 H 0.101 0.899 4 C -0.124 4.124 5 C 0.142 3.858 6 H 0.110 0.890 7 N -1.111 6.111 8 S 2.797 3.203 9 O -1.006 7.006 10 O -1.010 7.010 11 N -0.997 5.997 12 C 0.096 3.904 13 C 0.236 3.764 14 C -0.543 4.543 15 H 0.027 0.973 16 C 0.007 3.993 17 N -0.950 5.950 18 Si 0.943 3.057 19 H -0.270 1.270 20 H -0.227 1.227 21 H -0.281 1.281 22 C -0.086 4.086 23 S -0.329 6.329 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.424 0.576 30 H 0.035 0.965 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.034 0.966 34 H 0.058 0.942 35 H 0.267 0.733 36 H 0.095 0.905 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.996 -2.479 -4.400 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 H 0.119 0.881 4 C -0.164 4.164 5 C 0.034 3.966 6 H 0.128 0.872 7 N -0.873 5.873 8 S 2.804 3.196 9 O -0.990 6.990 10 O -0.994 6.994 11 N -0.838 5.838 12 C -0.049 4.049 13 C 0.111 3.889 14 C -0.583 4.583 15 H 0.045 0.955 16 C -0.191 4.191 17 N -0.590 5.590 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.150 1.150 21 H -0.207 1.207 22 C -0.236 4.236 23 S -0.104 6.104 24 H 0.089 0.911 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.260 0.740 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.979 -2.764 -4.587 24.570 hybrid contribution 1.305 1.055 0.352 1.715 sum -22.674 -1.709 -4.235 23.129 Atomic orbital electron populations 1.21622 0.90180 1.03669 1.03237 1.24225 1.00229 1.00306 0.91258 0.88113 1.22777 0.92625 1.02231 0.98766 1.21579 0.91073 0.91551 0.92425 0.87246 1.56083 1.36374 1.16519 1.78373 1.01322 0.72689 0.72218 0.73335 1.93528 1.85115 1.60945 1.59365 1.93589 1.74549 1.48137 1.83108 1.57309 1.54322 1.16165 1.55998 1.21543 1.01765 0.78178 1.03450 1.19225 0.87153 0.90686 0.91824 1.21733 0.94958 1.31067 1.10506 0.95502 1.25937 0.94412 0.97122 1.01620 1.70076 1.02520 1.44015 1.42388 0.85795 0.79262 0.79509 0.78935 1.19537 1.14969 1.20654 1.24660 0.96651 1.06769 0.95539 1.88031 1.22500 1.69560 1.30303 0.91116 0.89318 0.92101 0.87436 0.87819 0.73995 0.94618 0.89458 0.89223 0.94762 0.92386 0.92398 0.88641 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.42 71.98 0.68 -0.62 16 2 C -0.03 -0.44 3.94 31.33 0.12 -0.31 16 3 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.12 -1.63 5.41 31.32 0.17 -1.46 16 5 C 0.14 2.56 3.31 45.21 0.15 2.71 16 6 H 0.11 1.93 6.83 -2.39 -0.02 1.91 16 7 N -1.11 -25.54 5.22 -168.47 -0.88 -26.42 16 8 S 2.80 99.38 6.02 -56.49 -0.34 99.04 16 9 O -1.01 -38.30 16.53 -128.00 -2.12 -40.42 16 10 O -1.01 -46.14 17.11 -128.00 -2.19 -48.33 16 11 N -1.00 -36.67 3.23 -543.20 -1.75 -38.42 16 12 C 0.10 2.83 10.33 127.77 1.32 4.15 16 13 C 0.24 10.35 4.19 85.63 0.36 10.71 16 14 C -0.54 -31.18 9.94 25.60 0.25 -30.93 16 15 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 16 C 0.01 0.39 5.47 84.65 0.46 0.85 16 17 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 18 Si 0.94 42.34 27.47 68.60 1.88 44.22 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.23 -8.75 6.54 99.48 0.65 -8.10 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 C -0.09 -1.60 7.14 72.22 0.52 -1.09 16 23 S -0.33 -6.33 22.71 -56.49 -1.28 -7.61 16 24 H 0.07 0.70 8.09 -2.38 -0.02 0.68 16 25 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.11 1.14 8.02 -2.39 -0.02 1.12 16 28 H 0.10 1.20 8.02 -2.39 -0.02 1.18 16 29 H 0.42 8.23 8.87 -96.74 -0.86 7.37 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.92 7.18 -2.38 -0.02 1.91 16 32 H 0.09 2.26 7.94 -2.39 -0.02 2.24 16 33 H 0.03 1.48 7.04 -2.39 -0.02 1.47 16 34 H 0.06 2.29 7.02 -2.39 -0.02 2.27 16 35 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.10 2.01 7.89 -2.38 -0.02 1.99 16 37 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -78.18 326.10 -2.19 -80.37 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.15 Total: 13.33 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 4.03 Total: -15.98 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -2.33 Total: -124.62 kcal Atomic # 8 Polarization: -84.44 SS G_CDS: -4.31 Total: -88.75 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.22 kcal Atomic # 16 Polarization: 93.05 SS G_CDS: -1.62 Total: 91.43 kcal Total: -78.18 -2.19 -80.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416589389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.947 kcal (2) G-P(sol) polarization free energy of solvation -78.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds