Wall clock time and date at job start Tue Mar 31 2020 03:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.99181 * 2 1 4 4 C 1.55159 * 111.13348 * 235.74158 * 2 1 3 5 5 C 1.52931 * 108.96223 * 200.65083 * 4 2 1 6 6 H 1.09001 * 108.77990 * 150.81614 * 5 4 2 7 7 N 1.46509 * 108.88860 * 269.30390 * 5 4 2 8 8 S 1.65595 * 120.00236 * 219.43894 * 7 5 4 9 9 O 1.42101 * 106.40549 * 178.53767 * 8 7 5 10 10 O 1.42102 * 106.40165 * 311.45597 * 8 7 5 11 11 N 1.65600 * 107.22213 * 64.99533 * 8 7 5 12 12 C 1.46505 * 120.00174 * 270.00522 * 11 8 7 13 13 C 1.46500 * 120.00173 * 89.99666 * 11 8 7 14 14 C 1.50701 * 109.46696 * 95.00027 * 13 11 8 15 15 H 1.08002 * 120.00444 * 0.02562 * 14 13 11 16 16 C 1.37878 * 119.99715 * 180.02562 * 14 13 11 17 17 N 1.31512 * 120.00245 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99666 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47196 * 90.00115 * 18 16 14 20 20 H 1.48503 * 109.46678 * 209.99821 * 18 16 14 21 21 H 1.48497 * 109.47177 * 329.99760 * 18 16 14 22 22 C 1.53709 * 112.49363 * 30.09616 * 5 4 2 23 23 S 1.83394 * 104.96853 * 357.17763 * 22 5 4 24 24 H 1.09002 * 109.47153 * 297.23762 * 1 2 3 25 25 H 1.09001 * 109.46832 * 177.23953 * 1 2 3 26 26 H 1.09004 * 109.47261 * 57.23934 * 1 2 3 27 27 H 1.09000 * 109.59770 * 320.58208 * 4 2 1 28 28 H 1.09002 * 109.60476 * 80.71236 * 4 2 1 29 29 H 0.97002 * 119.99513 * 39.43451 * 7 5 4 30 30 H 1.08998 * 109.47190 * 89.99099 * 12 11 8 31 31 H 1.08995 * 109.47073 * 209.99568 * 12 11 8 32 32 H 1.09004 * 109.46596 * 329.99672 * 12 11 8 33 33 H 1.08994 * 109.47597 * 215.00759 * 13 11 8 34 34 H 1.09009 * 109.46828 * 335.00755 * 13 11 8 35 35 H 0.96995 * 120.00328 * 179.97438 * 17 16 14 36 36 H 1.09004 * 110.34171 * 238.30163 * 22 5 4 37 37 H 1.09005 * 110.34125 * 116.04855 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0177 0.0000 4 6 2.0894 -0.8147 -1.1962 5 6 3.5309 -1.2225 -0.8888 6 1 3.7478 -2.1590 -1.4028 7 7 4.4349 -0.1856 -1.3929 8 16 5.8640 -0.6115 -2.1129 9 8 6.4863 0.6002 -2.5176 10 8 6.4844 -1.5526 -1.2476 11 7 5.4880 -1.4307 -3.5021 12 6 5.3207 -2.8859 -3.4720 13 6 5.3225 -0.7003 -4.7612 14 6 6.6199 -0.7204 -5.5277 15 1 7.4814 -1.2269 -5.1182 16 6 6.7071 -0.0921 -6.7519 17 7 5.6583 0.5251 -7.2505 18 14 8.3150 -0.1176 -7.7024 19 1 8.3467 -1.3078 -8.5897 20 1 8.4242 1.1150 -8.5234 21 1 9.4523 -0.1800 -6.7495 22 6 3.7805 -1.4115 0.6161 23 16 2.1934 -0.9650 1.4192 24 1 -0.3633 0.4703 0.9137 25 1 -0.3633 -1.0265 -0.0495 26 1 -0.3634 0.5561 -0.8642 27 1 1.4813 -1.7066 -1.3474 28 1 2.0667 -0.2028 -2.0979 29 1 4.1962 0.7505 -1.3048 30 1 4.2784 -3.1275 -3.2638 31 1 5.6049 -3.3043 -4.4375 32 1 5.9543 -3.3083 -2.6921 33 1 4.5416 -1.1739 -5.3561 34 1 5.0421 0.3314 -4.5486 35 1 5.7197 0.9675 -8.1115 36 1 4.5763 -0.7479 0.9544 37 1 4.0348 -2.4495 0.8305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416589390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:12 Heat of formation + Delta-G solvation = -81.317681 kcal Electronic energy + Delta-G solvation = -20547.515730 eV Core-core repulsion = 17384.626814 eV Total energy + Delta-G solvation = -3162.888916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -37.85102 -36.61593 -35.56488 -35.23429 -33.57049 -32.48201 -30.07340 -27.84640 -27.01178 -25.13105 -23.26036 -22.34644 -20.68296 -19.20811 -17.46209 -16.98561 -16.74397 -16.39421 -15.87494 -15.25159 -15.04295 -14.60755 -14.34600 -13.85058 -13.53684 -13.35794 -12.98222 -12.51539 -12.47576 -12.23513 -12.19777 -12.18672 -11.69371 -11.57515 -11.45316 -11.26993 -11.21291 -11.11502 -10.91080 -10.75045 -10.56745 -10.24193 -10.06051 -9.82056 -9.47038 -8.48785 -8.14450 -7.85686 -6.10795 -4.14889 1.12597 1.66805 2.15939 3.28911 3.35572 3.38723 3.42761 4.03537 4.20693 4.41346 4.44863 4.68386 4.75604 4.88802 4.92309 5.09166 5.24743 5.26135 5.31066 5.42636 5.56862 5.60599 5.65455 5.82510 5.84879 5.88625 6.00829 6.23136 6.48847 6.96611 7.18174 7.34637 7.53784 7.86646 8.15368 8.87547 9.50753 10.97847 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.004433 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.343353 B = 6315.201327 C = 6750.653752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.038 4.038 3 H 0.098 0.902 4 C -0.131 4.131 5 C 0.153 3.847 6 H 0.098 0.902 7 N -1.130 6.130 8 S 2.779 3.221 9 O -0.962 6.962 10 O -0.995 6.995 11 N -0.995 5.995 12 C 0.092 3.908 13 C 0.258 3.742 14 C -0.530 4.530 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.079 4.079 23 S -0.302 6.302 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.413 0.587 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.100 0.900 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.473 -3.601 12.589 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 H 0.116 0.884 4 C -0.171 4.171 5 C 0.044 3.956 6 H 0.116 0.884 7 N -0.888 5.888 8 S 2.786 3.214 9 O -0.945 6.945 10 O -0.978 6.978 11 N -0.838 5.838 12 C -0.054 4.054 13 C 0.136 3.864 14 C -0.570 4.570 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.229 4.229 23 S -0.077 6.077 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.246 0.754 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.044 -3.767 13.832 17.504 hybrid contribution 0.903 0.627 -1.832 2.137 sum -9.141 -3.139 11.999 15.407 Atomic orbital electron populations 1.21619 0.91570 1.03223 1.02594 1.24102 0.99208 1.00601 0.92724 0.88390 1.22812 0.94212 1.01369 0.98705 1.21188 0.90183 0.91677 0.92556 0.88381 1.56614 1.40886 1.15121 1.76174 1.02089 0.73107 0.73470 0.72740 1.93652 1.72710 1.46093 1.82070 1.93537 1.73801 1.64273 1.66212 1.57602 1.86835 1.14908 1.24478 1.21407 0.99342 0.80732 1.03963 1.19055 0.97549 0.91047 0.78766 1.21491 0.97412 1.34640 1.03436 0.92165 1.24926 0.96805 0.94863 0.97371 1.69909 1.29289 1.35226 1.19075 0.86509 0.83776 0.77498 0.79765 1.20583 1.21024 1.19682 1.24588 0.96447 1.06097 0.95756 1.87814 1.22428 1.68945 1.28486 0.91867 0.91358 0.90968 0.89108 0.88504 0.75418 0.94386 0.90200 0.91467 0.94685 0.94454 0.92656 0.88106 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 9.42 37.16 0.35 -0.64 16 2 C -0.04 -0.35 3.94 -25.59 -0.10 -0.45 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.13 -1.23 5.41 -25.62 -0.14 -1.37 16 5 C 0.15 1.75 3.17 -67.59 -0.21 1.53 16 6 H 0.10 1.08 6.56 -51.93 -0.34 0.74 16 7 N -1.13 -15.27 5.22 -4.60 -0.02 -15.29 16 8 S 2.78 51.86 5.98 -107.50 -0.64 51.22 16 9 O -0.96 -22.27 17.11 -57.17 -0.98 -23.25 16 10 O -0.99 -19.44 16.50 -57.17 -0.94 -20.38 16 11 N -1.00 -19.46 3.23 -123.05 -0.40 -19.86 16 12 C 0.09 1.47 10.06 59.85 0.60 2.07 16 13 C 0.26 6.22 5.08 -5.19 -0.03 6.19 16 14 C -0.53 -14.62 9.38 -34.44 -0.32 -14.95 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.90 -25.69 13.29 55.43 0.74 -24.96 16 18 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.08 -0.90 7.14 37.53 0.27 -0.63 16 23 S -0.30 -3.38 22.72 -107.50 -2.44 -5.82 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.76 8.02 -51.93 -0.42 0.34 16 28 H 0.10 0.92 8.02 -51.93 -0.42 0.50 16 29 H 0.41 4.92 8.87 -34.47 -0.31 4.62 16 30 H 0.04 0.48 7.45 -51.93 -0.39 0.09 16 31 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 32 H 0.07 1.02 7.02 -51.93 -0.36 0.65 16 33 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 34 H 0.04 0.96 7.61 -51.92 -0.40 0.56 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.10 1.23 7.89 -51.93 -0.41 0.82 16 37 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -33.00 328.35 -9.98 -42.98 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.53 Total: 0.43 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 0.32 Total: -6.58 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.32 Total: -60.11 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -1.92 Total: -43.63 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 48.49 SS G_CDS: -3.08 Total: 45.40 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.00 -9.98 -42.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416589390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.341 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds