Wall clock time and date at job start Tue Mar 31 2020 03:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00074 * 2 1 4 4 C 1.50699 * 109.47119 * 269.99820 * 3 2 1 5 5 N 1.34778 * 120.00040 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00085 * 0.02562 * 4 3 2 7 7 C 1.34776 * 119.99775 * 180.02562 * 2 1 3 8 8 O 1.21551 * 120.00377 * 174.64182 * 7 2 1 9 9 C 1.47859 * 120.00085 * 354.63914 * 7 2 1 10 10 C 1.39676 * 120.10348 * 329.41255 * 9 7 2 11 11 C 1.38041 * 120.04063 * 180.02562 * 10 9 7 12 12 C 1.38180 * 120.24448 * 359.68129 * 11 10 9 13 13 C 1.39179 * 120.19939 * 0.59663 * 12 11 10 14 14 S 1.76199 * 120.02271 * 179.69839 * 13 12 11 15 15 C 1.76201 * 100.00039 * 264.83325 * 14 13 12 16 16 H 1.08003 * 120.00094 * 5.02060 * 15 14 13 17 17 C 1.38726 * 119.99931 * 185.02045 * 15 14 13 18 18 N 1.31630 * 119.99747 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00322 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47591 * 89.99704 * 19 17 15 21 21 H 1.48502 * 109.47474 * 210.00152 * 19 17 15 22 22 H 1.48510 * 109.47141 * 329.99592 * 19 17 15 23 23 C 1.38878 * 119.95836 * 359.42588 * 13 12 11 24 24 H 1.09000 * 109.47342 * 271.93861 * 1 2 3 25 25 H 1.09004 * 109.47069 * 31.93609 * 1 2 3 26 26 H 1.08998 * 109.47324 * 151.93397 * 1 2 3 27 27 H 1.08991 * 109.47389 * 29.99984 * 3 2 1 28 28 H 1.09005 * 109.46697 * 150.00066 * 3 2 1 29 29 H 0.97003 * 119.99670 * 359.97438 * 5 4 3 30 30 H 0.96995 * 119.99973 * 180.02562 * 5 4 3 31 31 H 1.07998 * 119.97894 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.87441 * 179.97438 * 11 10 9 33 33 H 1.07992 * 119.90128 * 180.29943 * 12 11 10 34 34 H 0.97006 * 119.99916 * 179.97438 * 18 17 15 35 35 H 1.08003 * 120.12058 * 180.25625 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 7 3.1117 2.8510 -1.6671 6 8 2.0542 1.0214 -2.3427 7 6 2.1388 -1.1672 -0.0005 8 8 3.3503 -1.1696 -0.0988 9 6 1.4043 -2.4450 0.1185 10 6 0.2072 -2.5007 0.8360 11 6 -0.4772 -3.6943 0.9468 12 6 0.0140 -4.8367 0.3442 13 6 1.2089 -4.7940 -0.3683 14 16 1.8350 -6.2553 -1.1281 15 6 2.9403 -6.8045 0.1294 16 1 2.9856 -6.2830 1.0741 17 6 3.7524 -7.9068 -0.0940 18 7 4.5785 -8.3168 0.8452 19 14 3.6747 -8.8085 -1.7281 20 1 4.6521 -8.2087 -2.6715 21 1 4.0037 -10.2414 -1.5190 22 1 2.3061 -8.6923 -2.2929 23 6 1.9045 -3.5977 -0.4847 24 1 -0.3634 0.0348 1.0271 25 1 -0.3633 0.8721 -0.5436 26 1 -0.3634 -0.9068 -0.4835 27 1 1.6085 2.0283 0.5138 28 1 3.1499 1.1383 0.5139 29 1 3.4269 3.3969 -0.9298 30 1 3.2731 3.1312 -2.5816 31 1 -0.1832 -1.6093 1.3043 32 1 -1.4023 -3.7344 1.5025 33 1 -0.5284 -5.7666 0.4303 34 1 5.1461 -9.0878 0.6892 35 1 2.8298 -3.5606 -1.0405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430775248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:02 Heat of formation + Delta-G solvation = -32.840338 kcal Electronic energy + Delta-G solvation = -20557.814451 eV Core-core repulsion = 17261.583718 eV Total energy + Delta-G solvation = -3296.230732 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.57425 -39.23577 -37.76814 -35.57881 -33.92086 -32.46260 -31.35296 -30.65221 -28.60656 -26.71978 -25.64229 -23.26725 -22.41529 -21.18554 -19.73241 -18.10072 -17.74443 -17.20462 -17.03211 -16.40122 -15.83998 -15.25954 -15.13961 -14.97894 -14.69600 -14.25774 -13.68526 -13.62528 -13.30433 -13.17101 -12.88342 -12.70398 -12.37655 -12.16567 -11.61807 -11.26704 -11.15995 -11.06899 -10.59010 -10.39597 -9.95081 -9.92914 -9.81432 -9.13451 -9.04475 -8.89020 -8.59362 -8.09562 -7.09751 -6.29367 -4.04603 1.19876 1.63337 2.41257 2.58003 2.92079 3.00219 3.30181 3.40441 3.41466 3.54035 4.04404 4.29389 4.46573 4.64968 4.81893 4.85994 4.93668 5.02958 5.09189 5.17361 5.22244 5.34418 5.55420 5.68655 5.82904 5.92982 6.17697 6.23265 6.50854 6.55085 6.61692 6.86150 7.03138 7.13678 7.23249 7.94906 8.01526 8.17933 8.48968 9.14540 10.80142 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.003889 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.403465 B = 7198.121792 C = 7810.985439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.602 5.602 3 C 0.098 3.902 4 C 0.498 3.502 5 N -0.858 5.858 6 O -0.527 6.527 7 C 0.571 3.429 8 O -0.527 6.527 9 C -0.147 4.147 10 C -0.096 4.096 11 C -0.141 4.141 12 C -0.053 4.053 13 C -0.084 4.084 14 S -0.113 6.113 15 C -0.508 4.508 16 H 0.091 0.909 17 C 0.095 3.905 18 N -0.876 5.876 19 Si 0.857 3.143 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.239 1.239 23 C -0.018 4.018 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.401 0.599 30 H 0.401 0.599 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.271 0.729 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.036 22.048 0.396 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.336 5.336 3 C -0.029 4.029 4 C 0.281 3.719 5 N -0.423 5.423 6 O -0.402 6.402 7 C 0.362 3.638 8 O -0.403 6.403 9 C -0.152 4.152 10 C -0.114 4.114 11 C -0.160 4.160 12 C -0.074 4.074 13 C -0.195 4.195 14 S 0.121 5.879 15 C -0.655 4.655 16 H 0.109 0.891 17 C -0.114 4.114 18 N -0.512 5.512 19 Si 0.682 3.318 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.163 1.163 23 C -0.040 4.040 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.127 0.873 28 H 0.133 0.867 29 H 0.229 0.771 30 H 0.232 0.768 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.791 20.779 -1.104 22.996 hybrid contribution 0.729 0.607 0.602 1.124 sum -9.062 21.386 -0.502 23.232 Atomic orbital electron populations 1.22206 0.78849 1.04217 1.01250 1.47256 1.07121 1.04442 1.74737 1.21253 1.00509 0.87226 0.93919 1.21328 0.77334 0.80601 0.92676 1.43847 1.60930 1.25239 1.12263 1.90787 1.50141 1.53006 1.46232 1.18501 0.86970 0.83378 0.74997 1.90781 1.13938 1.86963 1.48597 1.19688 0.97335 0.93240 1.04961 1.21650 0.93479 0.98605 0.97714 1.21060 1.00724 0.92616 1.01647 1.21879 0.94578 0.98279 0.92657 1.22154 0.97233 0.98359 1.01745 1.83051 1.54804 1.20853 1.29195 1.22256 1.24507 1.17838 1.00908 0.89056 1.24740 0.93479 0.95984 0.97174 1.69933 1.22633 1.25402 1.33276 0.86737 0.81242 0.79810 0.83998 1.19052 1.19800 1.16322 1.21831 0.97857 0.89925 0.94357 0.92004 0.91461 0.89440 0.87303 0.86701 0.77143 0.76823 0.84990 0.85602 0.84962 0.91842 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 8.77 59.85 0.52 1.22 16 2 N -0.60 -7.49 2.36 -184.08 -0.43 -7.93 16 3 C 0.10 0.91 5.86 -5.19 -0.03 0.88 16 4 C 0.50 5.57 8.17 -10.99 -0.09 5.48 16 5 N -0.86 -5.57 8.87 31.22 0.28 -5.29 16 6 O -0.53 -8.77 17.27 5.55 0.10 -8.67 16 7 C 0.57 9.84 7.42 -12.32 -0.09 9.75 16 8 O -0.53 -10.98 16.36 5.32 0.09 -10.90 16 9 C -0.15 -2.59 5.31 -105.00 -0.56 -3.15 16 10 C -0.10 -1.33 7.60 -39.12 -0.30 -1.63 16 11 C -0.14 -1.99 10.02 -39.67 -0.40 -2.39 16 12 C -0.05 -0.94 9.79 -39.25 -0.38 -1.33 16 13 C -0.08 -1.81 5.45 -38.99 -0.21 -2.02 16 14 S -0.11 -2.82 19.38 -107.50 -2.08 -4.90 16 15 C -0.51 -14.93 10.01 30.91 0.31 -14.62 16 16 H 0.09 2.92 8.02 -52.48 -0.42 2.50 16 17 C 0.10 2.79 5.50 -17.46 -0.10 2.70 16 18 N -0.88 -26.77 13.97 55.49 0.78 -26.00 16 19 Si 0.86 21.44 27.73 -169.99 -4.71 16.72 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.24 -5.78 6.74 56.52 0.38 -5.40 16 23 C -0.02 -0.38 9.35 -38.92 -0.36 -0.74 16 24 H 0.06 0.38 6.83 -51.93 -0.35 0.03 16 25 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.09 0.90 5.75 -51.93 -0.30 0.60 16 27 H 0.11 0.51 8.07 -51.93 -0.42 0.09 16 28 H 0.12 1.08 7.50 -51.93 -0.39 0.69 16 29 H 0.40 1.13 8.83 -40.82 -0.36 0.77 16 30 H 0.40 2.41 8.93 -40.82 -0.36 2.05 16 31 H 0.13 1.32 4.94 -52.49 -0.26 1.06 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.14 3.08 7.93 -52.48 -0.42 2.67 16 LS Contribution 319.43 15.07 4.81 4.81 Total: -1.00 -38.65 319.43 -6.57 -45.22 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.70 Total: 2.77 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -1.69 Total: -5.86 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.62 Total: -39.21 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.18 Total: -19.57 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.72 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.08 Total: -4.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -38.65 -6.57 -45.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430775248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.383 kcal (2) G-P(sol) polarization free energy of solvation -38.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds