Wall clock time and date at job start Tue Mar 31 2020 03:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00074 * 2 1 4 4 C 1.50699 * 109.47119 * 269.99820 * 3 2 1 5 5 N 1.34778 * 120.00040 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00085 * 0.02562 * 4 3 2 7 7 C 1.34776 * 119.99775 * 180.02562 * 2 1 3 8 8 O 1.21551 * 120.00377 * 174.64182 * 7 2 1 9 9 C 1.47859 * 120.00085 * 354.63914 * 7 2 1 10 10 C 1.39676 * 120.10348 * 329.41255 * 9 7 2 11 11 C 1.38041 * 120.04063 * 180.02562 * 10 9 7 12 12 C 1.38180 * 120.24448 * 359.68129 * 11 10 9 13 13 C 1.39179 * 120.19939 * 0.59663 * 12 11 10 14 14 S 1.76199 * 120.02271 * 179.69839 * 13 12 11 15 15 C 1.76201 * 100.00039 * 264.83325 * 14 13 12 16 16 H 1.08003 * 120.00094 * 5.02060 * 15 14 13 17 17 C 1.38726 * 119.99931 * 185.02045 * 15 14 13 18 18 N 1.31630 * 119.99747 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00322 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47591 * 89.99704 * 19 17 15 21 21 H 1.48502 * 109.47474 * 210.00152 * 19 17 15 22 22 H 1.48510 * 109.47141 * 329.99592 * 19 17 15 23 23 C 1.38878 * 119.95836 * 359.42588 * 13 12 11 24 24 H 1.09000 * 109.47342 * 271.93861 * 1 2 3 25 25 H 1.09004 * 109.47069 * 31.93609 * 1 2 3 26 26 H 1.08998 * 109.47324 * 151.93397 * 1 2 3 27 27 H 1.08991 * 109.47389 * 29.99984 * 3 2 1 28 28 H 1.09005 * 109.46697 * 150.00066 * 3 2 1 29 29 H 0.97003 * 119.99670 * 359.97438 * 5 4 3 30 30 H 0.96995 * 119.99973 * 180.02562 * 5 4 3 31 31 H 1.07998 * 119.97894 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.87441 * 179.97438 * 11 10 9 33 33 H 1.07992 * 119.90128 * 180.29943 * 12 11 10 34 34 H 0.97006 * 119.99916 * 179.97438 * 18 17 15 35 35 H 1.08003 * 120.12058 * 180.25625 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 7 3.1117 2.8510 -1.6671 6 8 2.0542 1.0214 -2.3427 7 6 2.1388 -1.1672 -0.0005 8 8 3.3503 -1.1696 -0.0988 9 6 1.4043 -2.4450 0.1185 10 6 0.2072 -2.5007 0.8360 11 6 -0.4772 -3.6943 0.9468 12 6 0.0140 -4.8367 0.3442 13 6 1.2089 -4.7940 -0.3683 14 16 1.8350 -6.2553 -1.1281 15 6 2.9403 -6.8045 0.1294 16 1 2.9856 -6.2830 1.0741 17 6 3.7524 -7.9068 -0.0940 18 7 4.5785 -8.3168 0.8452 19 14 3.6747 -8.8085 -1.7281 20 1 4.6521 -8.2087 -2.6715 21 1 4.0037 -10.2414 -1.5190 22 1 2.3061 -8.6923 -2.2929 23 6 1.9045 -3.5977 -0.4847 24 1 -0.3634 0.0348 1.0271 25 1 -0.3633 0.8721 -0.5436 26 1 -0.3634 -0.9068 -0.4835 27 1 1.6085 2.0283 0.5138 28 1 3.1499 1.1383 0.5139 29 1 3.4269 3.3969 -0.9298 30 1 3.2731 3.1312 -2.5816 31 1 -0.1832 -1.6093 1.3043 32 1 -1.4023 -3.7344 1.5025 33 1 -0.5284 -5.7666 0.4303 34 1 5.1461 -9.0878 0.6892 35 1 2.8298 -3.5606 -1.0405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430775248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:01 Heat of formation + Delta-G solvation = -64.221553 kcal Electronic energy + Delta-G solvation = -20559.175242 eV Core-core repulsion = 17261.583718 eV Total energy + Delta-G solvation = -3297.591524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69707 -40.28259 -39.07867 -36.67279 -34.73441 -34.71859 -32.59607 -32.02723 -29.48011 -27.93965 -27.67979 -24.48171 -23.79612 -22.14949 -20.88569 -19.91076 -18.65260 -18.43539 -18.08618 -17.60462 -17.15453 -16.93120 -16.45226 -16.25083 -15.91477 -15.48406 -15.02690 -14.87715 -14.70551 -14.54001 -14.12572 -13.95261 -13.66897 -13.42644 -13.10413 -13.02849 -12.72682 -12.57201 -12.26018 -11.86096 -11.37125 -11.26696 -11.23108 -10.86803 -10.69169 -10.05494 -9.76758 -9.71961 -9.16061 -8.55412 -6.29825 -0.15933 0.19857 1.04051 1.29758 1.41910 1.48502 1.58736 1.72707 1.84827 2.20249 2.53637 2.68430 2.82582 2.93344 3.41048 3.91288 3.92836 4.03257 4.15525 4.24492 4.30615 4.38225 4.45574 4.63821 4.69420 4.87190 4.91802 5.18701 5.27271 5.34942 5.43281 5.67365 5.83941 5.86615 6.08449 6.13572 6.42728 6.86790 6.96245 7.32498 8.58495 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.003889 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.403465 B = 7198.121792 C = 7810.985439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.592 5.592 3 C 0.093 3.907 4 C 0.491 3.509 5 N -0.834 5.834 6 O -0.592 6.592 7 C 0.562 3.438 8 O -0.582 6.582 9 C -0.156 4.156 10 C -0.067 4.067 11 C -0.120 4.120 12 C -0.060 4.060 13 C -0.119 4.119 14 S -0.117 6.117 15 C -0.525 4.525 16 H 0.044 0.956 17 C 0.041 3.959 18 N -0.919 5.919 19 Si 0.923 3.077 20 H -0.264 1.264 21 H -0.254 1.254 22 H -0.226 1.226 23 C -0.049 4.049 24 H 0.106 0.894 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.169 0.831 28 H 0.113 0.887 29 H 0.421 0.579 30 H 0.405 0.595 31 H 0.186 0.814 32 H 0.182 0.818 33 H 0.142 0.858 34 H 0.278 0.722 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.187 24.639 1.282 27.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.323 5.323 3 C -0.033 4.033 4 C 0.275 3.725 5 N -0.399 5.399 6 O -0.472 6.472 7 C 0.352 3.648 8 O -0.462 6.462 9 C -0.161 4.161 10 C -0.085 4.085 11 C -0.139 4.139 12 C -0.081 4.081 13 C -0.230 4.230 14 S 0.117 5.883 15 C -0.672 4.672 16 H 0.062 0.938 17 C -0.164 4.164 18 N -0.557 5.557 19 Si 0.743 3.257 20 H -0.189 1.189 21 H -0.178 1.178 22 H -0.149 1.149 23 C -0.071 4.071 24 H 0.124 0.876 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.186 0.814 28 H 0.131 0.869 29 H 0.253 0.747 30 H 0.237 0.763 31 H 0.203 0.797 32 H 0.199 0.801 33 H 0.159 0.841 34 H 0.088 0.912 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.969 23.465 -0.184 26.811 hybrid contribution 1.627 0.118 0.444 1.691 sum -11.341 23.583 0.259 26.170 Atomic orbital electron populations 1.22554 0.76341 1.04649 1.04118 1.47336 1.08768 1.03949 1.72221 1.21655 1.01498 0.87028 0.93134 1.21728 0.76948 0.80932 0.92846 1.43670 1.58844 1.23916 1.13468 1.90769 1.53249 1.55177 1.48042 1.18576 0.86436 0.84712 0.75066 1.90745 1.16183 1.87827 1.51487 1.19878 0.98830 0.92422 1.04980 1.22249 0.90942 1.00514 0.94765 1.21627 1.01896 0.90747 0.99661 1.22090 0.93176 1.00510 0.92299 1.22039 0.99504 0.96459 1.04976 1.82573 1.53696 1.23448 1.28547 1.22379 1.26087 1.17870 1.00850 0.93756 1.25739 0.92850 0.96698 1.01123 1.70038 1.23700 1.26358 1.35601 0.85763 0.81898 0.79078 0.78947 1.18876 1.17834 1.14944 1.21555 0.97349 0.91818 0.96388 0.87626 0.89380 0.90812 0.81389 0.86931 0.74708 0.76341 0.79707 0.80066 0.84063 0.91214 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.84 8.77 127.77 1.12 1.96 16 2 N -0.59 -13.22 2.36 -854.57 -2.02 -15.24 16 3 C 0.09 1.45 5.86 85.63 0.50 1.95 16 4 C 0.49 10.29 8.17 87.66 0.72 11.00 16 5 N -0.83 -9.11 8.87 -173.53 -1.54 -10.65 16 6 O -0.59 -19.79 17.27 -3.04 -0.05 -19.85 16 7 C 0.56 19.37 7.42 86.79 0.64 20.02 16 8 O -0.58 -25.54 16.36 -3.88 -0.06 -25.60 16 9 C -0.16 -5.46 5.31 -20.11 -0.11 -5.57 16 10 C -0.07 -1.59 7.60 22.57 0.17 -1.42 16 11 C -0.12 -2.89 10.02 22.21 0.22 -2.67 16 12 C -0.06 -2.07 9.79 22.48 0.22 -1.85 16 13 C -0.12 -5.32 5.45 22.65 0.12 -5.19 16 14 S -0.12 -6.06 19.38 -56.49 -1.09 -7.16 16 15 C -0.52 -32.71 10.01 67.94 0.68 -32.03 16 16 H 0.04 3.06 8.02 -2.91 -0.02 3.04 16 17 C 0.04 2.50 5.50 84.84 0.47 2.97 16 18 N -0.92 -58.54 13.97 21.64 0.30 -58.24 16 19 Si 0.92 45.41 27.73 68.60 1.90 47.31 16 20 H -0.26 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.25 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.23 -10.57 6.74 99.48 0.67 -9.90 16 23 C -0.05 -2.20 9.35 22.70 0.21 -1.99 16 24 H 0.11 0.52 6.83 -2.39 -0.02 0.51 16 25 H 0.09 0.87 8.09 -2.39 -0.02 0.85 16 26 H 0.07 1.21 5.75 -2.39 -0.01 1.20 16 27 H 0.17 0.60 8.07 -2.39 -0.02 0.58 16 28 H 0.11 1.90 7.50 -2.38 -0.02 1.88 16 29 H 0.42 1.11 8.83 -92.71 -0.82 0.29 16 30 H 0.41 4.26 8.93 -92.71 -0.83 3.43 16 31 H 0.19 2.43 4.94 -2.91 -0.01 2.42 16 32 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.28 16.23 8.31 -92.70 -0.77 15.46 16 35 H 0.10 4.91 7.93 -2.91 -0.02 4.89 16 Total: -1.00 -95.53 319.43 1.88 -93.66 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -0.53 Total: 8.60 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 4.97 Total: -12.83 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -3.26 Total: -84.12 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.12 Total: -45.45 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.31 kcal Atomic # 16 Polarization: -6.06 SS G_CDS: -1.09 Total: -7.16 kcal Total: -95.53 1.88 -93.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430775248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.434 kcal (2) G-P(sol) polarization free energy of solvation -95.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds