Wall clock time and date at job start Tue Mar 31 2020 04:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36004 * 117.00262 * 2 1 4 4 C 1.38470 * 120.00194 * 359.97438 * 3 2 1 5 5 C 1.38496 * 120.33237 * 180.02562 * 4 3 2 6 6 C 1.37796 * 120.34537 * 0.02562 * 5 4 3 7 7 C 1.39763 * 120.00322 * 359.74765 * 6 5 4 8 8 C 1.47542 * 120.16906 * 180.25199 * 7 6 5 9 9 O 1.21583 * 119.99906 * 180.23219 * 8 7 6 10 10 N 1.34776 * 119.99756 * 0.23260 * 8 7 6 11 11 C 1.46499 * 119.99731 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47337 * 179.97438 * 11 10 8 13 13 O 1.21296 * 119.99562 * 0.02562 * 12 11 10 14 14 N 1.34766 * 120.00363 * 180.02562 * 12 11 10 15 15 C 1.37103 * 120.00316 * 180.02562 * 14 12 11 16 16 H 1.07995 * 119.99540 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00112 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99813 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99850 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46916 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47105 * 119.99922 * 19 17 15 22 22 H 1.48503 * 109.47001 * 239.99968 * 19 17 15 23 23 C 1.39137 * 120.00482 * 179.97438 * 3 2 1 24 24 O 1.35744 * 120.16997 * 359.96071 * 23 3 2 25 25 H 1.08990 * 109.47550 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47055 * 300.00295 * 1 2 3 27 27 H 1.09001 * 109.46750 * 59.99948 * 1 2 3 28 28 H 1.07998 * 119.83356 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.82737 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.99835 * 179.97438 * 6 5 4 31 31 H 0.97005 * 120.00266 * 359.97438 * 10 8 7 32 32 H 1.08994 * 109.47156 * 299.99950 * 11 10 8 33 33 H 1.09002 * 109.47385 * 60.00029 * 11 10 8 34 34 H 0.97006 * 120.00194 * 359.97438 * 14 12 11 35 35 H 0.97008 * 119.99620 * 180.02562 * 18 17 15 36 36 H 0.96700 * 114.00347 * 89.99763 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2924 2.3731 -0.0005 5 6 1.9141 3.6107 -0.0011 6 6 3.2892 3.6990 -0.0016 7 6 4.0642 2.5359 0.0037 8 6 5.5368 2.6262 0.0088 9 8 6.2080 1.6124 0.0091 10 7 6.1380 3.8325 0.0130 11 6 7.6002 3.9221 0.0186 12 6 8.0147 5.3710 0.0219 13 8 7.1715 6.2430 0.0202 14 7 9.3221 5.6979 0.0266 15 6 9.6992 7.0161 0.0302 16 1 8.9485 7.7924 0.0287 17 6 11.0472 7.3531 0.0356 18 7 11.9606 6.4083 0.0369 19 14 11.5609 9.1490 0.0397 20 1 10.3509 10.0099 0.0368 21 1 12.3655 9.4310 1.2556 22 1 12.3746 9.4339 -1.1694 23 6 3.4359 1.2846 0.0005 24 8 4.1786 0.1484 0.0019 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2140 2.3136 -0.0005 29 1 1.3179 4.5113 -0.0011 30 1 3.7681 4.6670 -0.0024 31 1 5.6024 4.6413 0.0123 32 1 7.9910 3.4300 0.9092 33 1 7.9976 3.4330 -0.8708 34 1 9.9965 5.0006 0.0283 35 1 12.9017 6.6436 0.0411 36 1 4.3942 -0.1816 -0.8811 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436699433.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:00 Heat of formation + Delta-G solvation = -147.236865 kcal Electronic energy + Delta-G solvation = -22527.553824 eV Core-core repulsion = 18783.609615 eV Total energy + Delta-G solvation = -3743.944209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.79323 -40.73297 -39.87997 -38.46263 -37.57481 -36.24950 -35.30662 -33.39412 -32.02391 -30.78512 -29.17623 -28.15989 -26.55599 -24.45469 -23.43542 -21.59284 -21.41138 -20.21254 -19.80864 -18.96399 -17.91654 -17.76099 -17.27260 -17.03650 -16.67803 -16.52605 -16.38316 -16.21250 -15.74858 -15.50370 -15.13002 -15.00463 -14.86956 -13.99784 -13.69799 -13.55831 -13.51035 -13.25889 -13.07796 -12.91444 -12.44791 -12.22475 -12.10730 -12.05143 -11.87721 -11.58393 -10.97642 -10.57545 -10.31509 -10.10409 -9.91852 -9.23357 -8.51496 -6.01776 -0.35867 0.23284 1.35098 1.43185 1.57253 1.74555 1.83170 1.89842 2.26757 2.39462 2.64140 3.09516 3.15664 3.17256 3.58804 3.86278 4.04563 4.11566 4.19331 4.35659 4.40508 4.40707 4.42903 4.45703 4.63723 4.77561 5.06050 5.11473 5.19370 5.30541 5.38429 5.52543 5.91157 6.24317 6.42273 6.48737 6.80163 7.02598 7.08130 7.43092 7.92753 8.65660 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.042234 B = 0.002720 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.810388 B =10290.949153 C =10930.733231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.084 3.916 4 C -0.159 4.159 5 C -0.086 4.086 6 C -0.110 4.110 7 C -0.145 4.145 8 C 0.555 3.445 9 O -0.559 6.559 10 N -0.702 5.702 11 C 0.121 3.879 12 C 0.434 3.566 13 O -0.622 6.622 14 N -0.559 5.559 15 C -0.336 4.336 16 H 0.088 0.912 17 C -0.012 4.012 18 N -0.917 5.917 19 Si 0.998 3.002 20 H -0.269 1.269 21 H -0.272 1.272 22 H -0.271 1.271 23 C 0.112 3.888 24 O -0.486 6.486 25 H 0.117 0.883 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.172 0.828 29 H 0.171 0.829 30 H 0.142 0.858 31 H 0.413 0.587 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.399 0.601 35 H 0.280 0.720 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.736 -9.015 -1.818 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.243 6.243 3 C 0.038 3.962 4 C -0.177 4.177 5 C -0.104 4.104 6 C -0.129 4.129 7 C -0.148 4.148 8 C 0.344 3.656 9 O -0.439 6.439 10 N -0.357 5.357 11 C -0.007 4.007 12 C 0.221 3.779 13 O -0.510 6.510 14 N -0.194 5.194 15 C -0.465 4.465 16 H 0.106 0.894 17 C -0.213 4.213 18 N -0.557 5.557 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.197 1.197 22 H -0.196 1.196 23 C 0.065 3.935 24 O -0.297 6.297 25 H 0.135 0.865 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.190 0.810 29 H 0.189 0.811 30 H 0.159 0.841 31 H 0.253 0.747 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -22.513 -9.288 -1.218 24.384 hybrid contribution 0.800 0.672 -0.451 1.138 sum -21.713 -8.617 -1.669 23.420 Atomic orbital electron populations 1.23448 0.75968 1.05832 1.02762 1.86145 1.23755 1.25749 1.88636 1.19376 0.90749 0.86421 0.99659 1.21748 1.01972 0.90761 1.03248 1.21306 0.93400 0.98784 0.96929 1.21470 0.95102 0.96923 0.99393 1.20056 0.92059 0.94302 1.08428 1.18336 0.88100 0.82782 0.76417 1.90771 1.66473 1.35746 1.50915 1.45593 1.06712 1.09053 1.74312 1.20805 0.81839 0.93615 1.04393 1.20341 0.83159 0.90766 0.83654 1.90464 1.51187 1.51351 1.58046 1.41853 1.05730 1.08518 1.63332 1.19784 0.92488 0.83952 1.50261 0.89435 1.26159 0.94949 1.04369 0.95786 1.69693 1.01970 1.34679 1.49323 0.84793 0.78233 0.76560 0.78278 1.19306 1.19700 1.19634 1.17925 0.87195 0.85691 1.02679 1.84765 1.71944 1.38715 1.34265 0.86525 0.91259 0.90834 0.81044 0.81132 0.84057 0.74685 0.88825 0.88491 0.76697 0.91068 0.74206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.24 16 2 O -0.33 -6.53 10.28 -79.69 -0.82 -7.35 16 3 C 0.08 1.81 6.69 22.54 0.15 1.96 16 4 C -0.16 -2.35 9.03 22.39 0.20 -2.15 16 5 C -0.09 -1.32 10.02 22.23 0.22 -1.10 16 6 C -0.11 -2.39 9.53 22.53 0.21 -2.18 16 7 C -0.14 -4.10 5.88 -20.02 -0.12 -4.22 16 8 C 0.56 19.16 7.76 86.70 0.67 19.83 16 9 O -0.56 -22.41 15.16 16.96 0.26 -22.15 16 10 N -0.70 -24.22 5.48 -470.00 -2.57 -26.80 16 11 C 0.12 4.55 6.15 85.63 0.53 5.07 16 12 C 0.43 20.11 7.85 87.66 0.69 20.79 16 13 O -0.62 -31.92 15.24 -3.08 -0.05 -31.96 16 14 N -0.56 -28.16 5.29 -306.99 -1.62 -29.79 16 15 C -0.34 -18.45 9.68 84.04 0.81 -17.64 16 16 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 17 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 18 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 19 Si 1.00 41.65 29.55 68.60 2.03 43.68 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 C 0.11 3.10 6.73 22.92 0.15 3.26 16 24 O -0.49 -14.59 11.36 -63.34 -0.72 -15.31 16 25 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.45 7.66 -2.38 -0.02 0.43 16 27 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 28 H 0.17 1.23 6.27 -2.91 -0.02 1.22 16 29 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 30 H 0.14 2.90 6.40 -2.91 -0.02 2.88 16 31 H 0.41 13.68 5.46 -92.70 -0.51 13.17 16 32 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.40 19.37 7.90 -92.70 -0.73 18.63 16 35 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 36 H 0.40 9.18 9.06 -74.06 -0.67 8.50 16 Total: -1.00 -73.32 319.74 1.16 -72.17 By element: Atomic # 1 Polarization: 42.08 SS G_CDS: -0.74 Total: 41.34 kcal Atomic # 6 Polarization: 19.60 SS G_CDS: 5.11 Total: 24.71 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -3.91 Total: -105.12 kcal Atomic # 8 Polarization: -75.45 SS G_CDS: -1.33 Total: -76.77 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -73.32 1.16 -72.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436699433.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.071 kcal (2) G-P(sol) polarization free energy of solvation -73.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds