Wall clock time and date at job start Tue Mar 31 2020 03:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 116.99898 * 2 1 4 4 O 1.20833 * 119.99771 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00208 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47023 * 179.97438 * 5 3 2 7 7 C 1.36912 * 120.00102 * 269.99485 * 6 5 3 8 8 H 1.07997 * 119.99753 * 17.17598 * 7 6 5 9 9 C 1.39019 * 120.00004 * 197.17226 * 7 6 5 10 10 N 1.31380 * 120.00060 * 17.92472 * 9 7 6 11 11 Si 1.86797 * 119.99948 * 197.91926 * 9 7 6 12 12 H 1.48496 * 109.47059 * 90.00465 * 11 9 7 13 13 H 1.48496 * 109.47145 * 210.00275 * 11 9 7 14 14 H 1.48503 * 109.47310 * 330.00061 * 11 9 7 15 15 C 1.34777 * 120.00054 * 90.00151 * 6 5 3 16 16 O 1.21611 * 120.00249 * 241.60614 * 15 6 5 17 17 C 1.47512 * 119.99901 * 61.60215 * 15 6 5 18 18 C 1.40322 * 120.49836 * 28.95392 * 17 15 6 19 19 C 1.36964 * 118.46350 * 180.29352 * 18 17 15 20 20 C 1.39154 * 119.40105 * 359.95579 * 19 18 17 21 21 O 1.35507 * 119.51096 * 180.02562 * 20 19 18 22 22 N 1.32428 * 120.97677 * 0.04451 * 20 19 18 23 23 C 1.31694 * 121.67025 * 359.97287 * 22 20 19 24 24 C 1.50702 * 119.75921 * 180.02562 * 23 22 20 25 25 H 1.08999 * 109.47323 * 299.99800 * 1 2 3 26 26 H 1.08995 * 109.47211 * 59.99895 * 1 2 3 27 27 H 1.09003 * 109.46789 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47129 * 59.99731 * 5 3 2 29 29 H 1.09003 * 109.46992 * 300.00282 * 5 3 2 30 30 H 0.96997 * 120.00661 * 184.95756 * 10 9 7 31 31 H 1.07992 * 120.76831 * 0.26807 * 18 17 15 32 32 H 1.07994 * 120.29471 * 179.97438 * 19 18 17 33 33 H 0.96703 * 113.99746 * 270.01974 * 21 20 19 34 34 H 1.09002 * 109.47307 * 264.00446 * 24 23 22 35 35 H 1.08997 * 109.46878 * 23.99893 * 24 23 22 36 36 H 1.08996 * 109.46963 * 143.99853 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.1753 3.3360 -1.1870 8 1 3.7673 2.9309 -2.1012 9 6 4.8971 4.5239 -1.2143 10 7 5.6812 4.8394 -0.2085 11 14 4.7521 5.6713 -2.6812 12 1 3.6486 6.6370 -2.4471 13 1 6.0275 6.4107 -2.8592 14 1 4.4651 4.8783 -3.9035 15 6 4.1731 3.3264 1.1659 16 8 3.4939 4.2966 1.4421 17 6 5.2065 2.8571 2.1081 18 6 6.3530 2.1989 1.6377 19 6 7.2830 1.7754 2.5497 20 6 7.0668 2.0087 3.9044 21 8 7.9857 1.5911 4.8085 22 7 5.9762 2.6323 4.3231 23 6 5.0560 3.0562 3.4817 24 6 3.8316 3.7616 4.0054 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.9557 0.7810 -0.8908 29 1 3.9564 0.7807 0.8891 30 1 6.1288 5.6998 -0.1938 31 1 6.4986 2.0298 0.5811 32 1 8.1761 1.2654 2.2203 33 1 7.8345 0.6944 5.1375 34 1 3.0161 3.0458 4.1086 35 1 4.0538 4.2017 4.9775 36 1 3.5394 4.5476 3.3090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440971451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:36 Heat of formation + Delta-G solvation = -116.670748 kcal Electronic energy + Delta-G solvation = -24347.518613 eV Core-core repulsion = 20604.899850 eV Total energy + Delta-G solvation = -3742.618762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82706 -41.26158 -39.98747 -37.97710 -37.39597 -36.37798 -34.02231 -33.72716 -32.36017 -30.03346 -28.81410 -27.79610 -26.48221 -24.70766 -23.22650 -22.48539 -21.43330 -19.60971 -19.13662 -18.62424 -18.11015 -17.65205 -17.36025 -16.94614 -16.78351 -16.68498 -16.02086 -15.64224 -15.08732 -14.69664 -14.45006 -14.39586 -14.19469 -14.01232 -13.61392 -13.46012 -13.14655 -13.05383 -12.91540 -12.83637 -12.76710 -12.65370 -12.50250 -12.05423 -11.71159 -11.69462 -11.03065 -10.78625 -10.63495 -10.26779 -9.65449 -9.51236 -8.28061 -5.70321 -0.24935 0.31555 1.32281 1.38185 1.47410 1.51562 1.66175 1.97962 2.39990 2.60380 2.79909 3.02224 3.22865 3.65366 3.92494 3.94556 4.14889 4.20939 4.29501 4.36070 4.37670 4.53702 4.54599 4.59981 4.67671 4.72786 4.79903 5.07367 5.23988 5.37614 5.44213 5.45337 5.61556 5.99476 6.67894 6.86646 6.90824 6.94228 7.24313 7.50570 7.88403 8.83401 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.007505 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.300208 B = 3730.023904 C = 5284.965869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.428 3.572 4 O -0.531 6.531 5 C 0.140 3.860 6 N -0.539 5.539 7 C -0.298 4.298 8 H 0.090 0.910 9 C -0.014 4.014 10 N -0.900 5.900 11 Si 0.968 3.032 12 H -0.302 1.302 13 H -0.284 1.284 14 H -0.255 1.255 15 C 0.627 3.373 16 O -0.544 6.544 17 C -0.182 4.182 18 C 0.005 3.995 19 C -0.192 4.192 20 C 0.319 3.681 21 O -0.485 6.485 22 N -0.529 5.529 23 C 0.172 3.828 24 C -0.117 4.117 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.120 0.880 30 H 0.262 0.738 31 H 0.146 0.854 32 H 0.174 0.826 33 H 0.422 0.578 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 -14.340 3.535 14.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.269 3.731 4 O -0.419 6.419 5 C 0.013 3.987 6 N -0.267 5.267 7 C -0.425 4.425 8 H 0.108 0.892 9 C -0.214 4.214 10 N -0.542 5.542 11 Si 0.795 3.205 12 H -0.229 1.229 13 H -0.210 1.210 14 H -0.179 1.179 15 C 0.419 3.581 16 O -0.421 6.421 17 C -0.188 4.188 18 C -0.020 4.020 19 C -0.212 4.212 20 C 0.139 3.861 21 O -0.295 6.295 22 N -0.249 5.249 23 C 0.034 3.966 24 C -0.174 4.174 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.138 0.862 30 H 0.073 0.927 31 H 0.164 0.836 32 H 0.192 0.808 33 H 0.284 0.716 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.095 -12.764 4.509 13.537 hybrid contribution -0.471 0.796 -1.423 1.697 sum -0.376 -11.967 3.086 12.365 Atomic orbital electron populations 1.23465 0.75767 1.05498 1.01764 1.86508 1.24330 1.32750 1.84186 1.25843 0.94410 0.81220 0.71658 1.90697 1.67700 1.37956 1.45524 1.20799 0.85461 0.85073 1.07370 1.42402 1.71114 1.09011 1.04171 1.19441 1.29321 1.07889 0.85844 0.89236 1.25654 0.94716 1.00275 1.00766 1.69509 1.28225 1.21795 1.34643 0.85281 0.76511 0.79023 0.79691 1.22929 1.21001 1.17872 1.17569 0.79827 0.80957 0.79697 1.90410 1.46412 1.30654 1.74610 1.21166 0.99447 1.03832 0.94344 1.21440 0.90337 0.89187 1.01052 1.21985 1.02310 1.05015 0.91934 1.19491 0.86265 0.92659 0.87645 1.84685 1.45574 1.38925 1.60330 1.67016 1.03080 1.14203 1.40624 1.21230 0.94302 0.92740 0.88321 1.21046 0.92887 1.01024 1.02488 0.93001 0.92817 0.84338 0.84174 0.86222 0.92738 0.83633 0.80849 0.71641 0.90094 0.89874 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.56 113.37 1.20 1.86 16 2 O -0.36 -10.64 10.57 -51.45 -0.54 -11.19 16 3 C 0.43 16.04 8.02 71.24 0.57 16.61 16 4 O -0.53 -25.24 16.18 21.94 0.36 -24.88 16 5 C 0.14 4.89 6.05 85.63 0.52 5.41 16 6 N -0.54 -25.25 1.64 -643.24 -1.06 -26.31 16 7 C -0.30 -15.28 9.61 84.09 0.81 -14.47 16 8 H 0.09 4.39 7.89 -2.91 -0.02 4.36 16 9 C -0.01 -0.76 5.05 84.95 0.43 -0.33 16 10 N -0.90 -49.96 11.14 21.68 0.24 -49.72 16 11 Si 0.97 44.19 29.59 68.60 2.03 46.22 16 12 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 14 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 15 C 0.63 31.31 3.64 86.69 0.32 31.63 16 16 O -0.54 -31.65 14.07 -4.06 -0.06 -31.71 16 17 C -0.18 -7.75 5.13 -19.99 -0.10 -7.85 16 18 C 0.01 0.20 9.50 22.48 0.21 0.41 16 19 C -0.19 -5.61 9.97 22.19 0.22 -5.38 16 20 C 0.32 9.92 7.74 84.82 0.66 10.57 16 21 O -0.48 -11.71 13.55 -88.09 -1.19 -12.91 16 22 N -0.53 -19.45 10.30 -295.79 -3.05 -22.50 16 23 C 0.17 6.95 6.82 42.91 0.29 7.24 16 24 C -0.12 -4.56 9.50 71.24 0.68 -3.88 16 25 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 26 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 27 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.14 4.01 8.04 -2.38 -0.02 3.99 16 29 H 0.12 3.50 7.55 -2.39 -0.02 3.48 16 30 H 0.26 14.55 8.32 -92.71 -0.77 13.78 16 31 H 0.15 5.34 7.92 -2.91 -0.02 5.31 16 32 H 0.17 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.42 5.11 9.06 -74.06 -0.67 4.44 16 34 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.09 3.95 5.25 -2.39 -0.01 3.94 16 Total: -1.00 -77.00 322.75 2.99 -74.01 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.46 Total: 17.15 kcal Atomic # 6 Polarization: 36.02 SS G_CDS: 5.80 Total: 41.82 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -3.86 Total: -98.52 kcal Atomic # 8 Polarization: -79.24 SS G_CDS: -1.44 Total: -80.68 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -77.00 2.99 -74.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440971451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.659 kcal (2) G-P(sol) polarization free energy of solvation -77.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds