Wall clock time and date at job start Tue Mar 31 2020 03:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 102.99944 * 2 1 4 4 H 1.09002 * 110.64106 * 54.30111 * 3 2 1 5 5 C 1.55162 * 110.72047 * 291.15870 * 3 2 1 6 6 C 1.54912 * 101.57717 * 205.95876 * 5 3 2 7 7 N 1.47422 * 104.83500 * 37.00946 * 6 5 3 8 8 S 1.65594 * 125.64464 * 155.91617 * 7 6 5 9 9 O 1.42109 * 106.40097 * 203.51353 * 8 7 6 10 10 O 1.42098 * 106.40823 * 336.43511 * 8 7 6 11 11 N 1.65595 * 107.21984 * 89.97979 * 8 7 6 12 12 C 1.46506 * 120.00465 * 89.99457 * 11 8 7 13 13 C 1.46506 * 119.99657 * 269.99496 * 11 8 7 14 14 C 1.50705 * 109.46728 * 95.00057 * 13 11 8 15 15 H 1.08002 * 120.00176 * 359.97438 * 14 13 11 16 16 C 1.37883 * 119.99882 * 179.97438 * 14 13 11 17 17 N 1.31504 * 119.99827 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99681 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47022 * 90.00448 * 18 16 14 20 20 H 1.48497 * 109.47228 * 209.99768 * 18 16 14 21 21 H 1.48493 * 109.47469 * 330.00180 * 18 16 14 22 22 C 1.47018 * 108.70074 * 335.87099 * 7 6 5 23 23 H 1.09005 * 109.47057 * 59.99718 * 1 2 3 24 24 H 1.08995 * 109.47394 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47120 * 299.99637 * 1 2 3 26 26 H 1.08999 * 111.00577 * 324.02907 * 5 3 2 27 27 H 1.08996 * 111.00139 * 87.88675 * 5 3 2 28 28 H 1.09003 * 110.36123 * 155.85332 * 6 5 3 29 29 H 1.08998 * 110.36411 * 278.05837 * 6 5 3 30 30 H 1.09004 * 109.46577 * 89.99946 * 12 11 8 31 31 H 1.08998 * 109.47135 * 209.99963 * 12 11 8 32 32 H 1.09001 * 109.46818 * 330.00371 * 12 11 8 33 33 H 1.09005 * 109.47104 * 214.99659 * 13 11 8 34 34 H 1.08995 * 109.47069 * 335.00029 * 13 11 8 35 35 H 0.97008 * 119.99409 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.88087 * 241.63802 * 22 7 6 37 37 H 1.09003 * 109.87911 * 120.47955 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7285 2.2758 0.8284 5 6 1.8351 2.4203 -1.3534 6 6 2.8181 3.6160 -1.4141 7 7 4.0703 3.1054 -0.8271 8 16 5.5869 3.7025 -1.1196 9 8 6.4952 2.6467 -0.8369 10 8 5.5245 4.3576 -2.3790 11 7 5.8753 4.8814 0.0070 12 6 6.4956 4.5345 1.2881 13 6 5.5102 6.2714 -0.2775 14 6 4.1468 6.5600 0.2962 15 1 3.6063 5.7854 0.8200 16 6 3.5895 7.8130 0.1525 17 7 2.3997 8.0647 0.6527 18 14 4.5248 9.1529 -0.7527 19 1 4.1815 9.1070 -2.1968 20 1 4.1518 10.4786 -0.1973 21 1 5.9844 8.9383 -0.5839 22 6 3.7494 1.9792 0.0617 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.0051 1.7324 -2.1817 27 1 0.8011 2.7648 -1.3395 28 1 2.9805 3.9214 -2.4479 29 1 2.4355 4.4517 -0.8281 30 1 7.5794 4.6096 1.1991 31 1 6.1459 5.2213 2.0589 32 1 6.2231 3.5146 1.5593 33 1 6.2434 6.9395 0.1744 34 1 5.4913 6.4287 -1.3559 35 1 2.0075 8.9461 0.5513 36 1 4.0500 2.2152 1.0825 37 1 4.2624 1.0799 -0.2795 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451734123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:52 Heat of formation + Delta-G solvation = -67.773112 kcal Electronic energy + Delta-G solvation = -20834.486999 eV Core-core repulsion = 17672.185419 eV Total energy + Delta-G solvation = -3162.301579 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.14363 -36.76991 -35.65630 -35.33128 -32.49491 -30.92785 -29.05788 -28.79061 -28.41343 -25.21545 -22.52824 -21.84006 -21.36013 -18.52707 -17.59586 -17.08697 -16.77088 -16.44547 -15.87429 -15.32403 -14.41352 -14.13127 -13.91240 -13.80407 -13.53343 -13.21502 -13.15263 -12.84004 -12.61138 -12.48393 -12.38197 -12.01651 -11.86895 -11.67364 -11.41607 -11.31178 -11.27795 -11.15082 -10.87333 -10.74884 -10.51100 -10.24959 -9.93572 -9.64256 -8.70555 -8.67790 -8.14539 -7.77542 -6.21558 -4.21931 1.07583 1.59239 2.44122 3.23072 3.29603 3.33593 3.40845 4.02876 4.31009 4.33229 4.60215 4.89948 5.00945 5.01208 5.10195 5.12287 5.41289 5.42419 5.53975 5.55859 5.67074 5.79607 5.92233 5.98038 6.02687 6.12478 6.33631 6.40519 6.48881 6.62981 6.80513 7.07059 7.34705 7.49532 8.35688 8.81243 9.39617 10.90557 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.017594 B = 0.005909 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.068175 B = 4737.490578 C = 5638.295844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.251 6.251 3 C -0.065 4.065 4 H 0.104 0.896 5 C -0.122 4.122 6 C 0.121 3.879 7 N -1.012 6.012 8 S 2.803 3.197 9 O -0.991 6.991 10 O -0.975 6.975 11 N -0.991 5.991 12 C 0.105 3.895 13 C 0.212 3.788 14 C -0.541 4.541 15 H 0.081 0.919 16 C 0.077 3.923 17 N -0.894 5.894 18 Si 0.869 3.131 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.264 1.264 22 C 0.151 3.849 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.043 0.957 35 H 0.265 0.735 36 H 0.072 0.928 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.164 -11.911 -0.315 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.025 6.025 3 C -0.195 4.195 4 H 0.122 0.878 5 C -0.163 4.163 6 C -0.005 4.005 7 N -0.851 5.851 8 S 2.813 3.187 9 O -0.975 6.975 10 O -0.959 6.959 11 N -0.832 5.832 12 C -0.041 4.041 13 C 0.089 3.911 14 C -0.580 4.580 15 H 0.099 0.901 16 C -0.127 4.127 17 N -0.531 5.531 18 Si 0.696 3.304 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.188 1.188 22 C 0.024 3.976 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.931 -12.890 -0.968 12.960 hybrid contribution -0.885 2.054 0.077 2.238 sum -1.816 -10.836 -0.891 11.023 Atomic orbital electron populations 1.23365 0.94188 1.06220 1.05188 1.86770 1.07378 1.10383 1.97925 1.24262 0.99652 0.93538 1.02078 0.87800 1.23155 0.99915 0.97696 0.95547 1.22055 0.82542 0.96269 0.99641 1.59038 1.23741 1.43600 1.58769 1.01246 0.71733 0.72266 0.73495 1.93550 1.61511 1.56299 1.86178 1.93560 1.86447 1.75665 1.40246 1.57509 1.74003 1.21491 1.30225 1.21265 0.96661 1.00118 0.86084 1.19621 0.96948 0.77191 0.97358 1.21439 1.00646 0.98723 1.37173 0.90108 1.24843 0.94680 0.98245 0.94885 1.69884 1.15631 1.22499 1.45127 0.86950 0.81092 0.81622 0.80771 1.19679 1.21031 1.18827 1.21240 0.92400 0.89551 0.94402 0.90320 0.88288 0.90404 0.89730 0.89883 0.89963 0.89242 0.93538 0.90535 0.92637 0.94528 0.93924 0.92482 0.90960 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.69 101.05 1.08 0.06 16 2 S -0.25 -2.94 21.66 -107.50 -2.33 -5.26 16 3 C -0.07 -0.83 3.45 -24.90 -0.09 -0.92 16 4 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 5 C -0.12 -1.54 6.48 -24.58 -0.16 -1.70 16 6 C 0.12 1.98 7.10 -2.53 -0.02 1.96 16 7 N -1.01 -17.47 3.75 -111.42 -0.42 -17.89 16 8 S 2.80 55.71 6.31 -107.50 -0.68 55.03 16 9 O -0.99 -20.31 16.79 -57.17 -0.96 -21.27 16 10 O -0.97 -21.91 16.01 -57.17 -0.92 -22.83 16 11 N -0.99 -20.00 3.23 -123.04 -0.40 -20.40 16 12 C 0.11 1.77 10.31 59.85 0.62 2.38 16 13 C 0.21 4.90 4.48 -5.19 -0.02 4.87 16 14 C -0.54 -13.94 9.94 -34.44 -0.34 -14.28 16 15 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 16 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 17 N -0.89 -25.33 13.96 55.43 0.77 -24.55 16 18 Si 0.87 20.40 27.47 -169.99 -4.67 15.74 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 22 C 0.15 2.23 6.61 -3.07 -0.02 2.21 16 23 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 24 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.35 7.78 -51.93 -0.40 0.95 16 29 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 32 H 0.05 0.83 7.79 -51.93 -0.40 0.43 16 33 H 0.04 0.83 7.16 -51.93 -0.37 0.46 16 34 H 0.04 1.02 6.34 -51.93 -0.33 0.69 16 35 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.10 7.79 -51.93 -0.40 0.69 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -30.94 328.95 -9.41 -40.35 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.72 Total: -0.42 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 0.95 Total: -3.45 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.04 Total: -62.84 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -1.88 Total: -44.10 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 16 Polarization: 52.77 SS G_CDS: -3.01 Total: 49.77 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.94 -9.41 -40.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451734123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.425 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds