Wall clock time and date at job start Tue Mar 31 2020 03:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 102.99944 * 2 1 4 4 H 1.09002 * 110.64106 * 54.30111 * 3 2 1 5 5 C 1.55162 * 110.72047 * 291.15870 * 3 2 1 6 6 C 1.54912 * 101.57717 * 205.95876 * 5 3 2 7 7 N 1.47422 * 104.83500 * 37.00946 * 6 5 3 8 8 S 1.65594 * 125.64464 * 155.91617 * 7 6 5 9 9 O 1.42109 * 106.40097 * 203.51353 * 8 7 6 10 10 O 1.42098 * 106.40823 * 336.43511 * 8 7 6 11 11 N 1.65595 * 107.21984 * 89.97979 * 8 7 6 12 12 C 1.46506 * 120.00465 * 89.99457 * 11 8 7 13 13 C 1.46506 * 119.99657 * 269.99496 * 11 8 7 14 14 C 1.50705 * 109.46728 * 95.00057 * 13 11 8 15 15 H 1.08002 * 120.00176 * 359.97438 * 14 13 11 16 16 C 1.37883 * 119.99882 * 179.97438 * 14 13 11 17 17 N 1.31504 * 119.99827 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99681 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47022 * 90.00448 * 18 16 14 20 20 H 1.48497 * 109.47228 * 209.99768 * 18 16 14 21 21 H 1.48493 * 109.47469 * 330.00180 * 18 16 14 22 22 C 1.47018 * 108.70074 * 335.87099 * 7 6 5 23 23 H 1.09005 * 109.47057 * 59.99718 * 1 2 3 24 24 H 1.08995 * 109.47394 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47120 * 299.99637 * 1 2 3 26 26 H 1.08999 * 111.00577 * 324.02907 * 5 3 2 27 27 H 1.08996 * 111.00139 * 87.88675 * 5 3 2 28 28 H 1.09003 * 110.36123 * 155.85332 * 6 5 3 29 29 H 1.08998 * 110.36411 * 278.05837 * 6 5 3 30 30 H 1.09004 * 109.46577 * 89.99946 * 12 11 8 31 31 H 1.08998 * 109.47135 * 209.99963 * 12 11 8 32 32 H 1.09001 * 109.46818 * 330.00371 * 12 11 8 33 33 H 1.09005 * 109.47104 * 214.99659 * 13 11 8 34 34 H 1.08995 * 109.47069 * 335.00029 * 13 11 8 35 35 H 0.97008 * 119.99409 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.88087 * 241.63802 * 22 7 6 37 37 H 1.09003 * 109.87911 * 120.47955 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7285 2.2758 0.8284 5 6 1.8351 2.4203 -1.3534 6 6 2.8181 3.6160 -1.4141 7 7 4.0703 3.1054 -0.8271 8 16 5.5869 3.7025 -1.1196 9 8 6.4952 2.6467 -0.8369 10 8 5.5245 4.3576 -2.3790 11 7 5.8753 4.8814 0.0070 12 6 6.4956 4.5345 1.2881 13 6 5.5102 6.2714 -0.2775 14 6 4.1468 6.5600 0.2962 15 1 3.6063 5.7854 0.8200 16 6 3.5895 7.8130 0.1525 17 7 2.3997 8.0647 0.6527 18 14 4.5248 9.1529 -0.7527 19 1 4.1815 9.1070 -2.1968 20 1 4.1518 10.4786 -0.1973 21 1 5.9844 8.9383 -0.5839 22 6 3.7494 1.9792 0.0617 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.0051 1.7324 -2.1817 27 1 0.8011 2.7648 -1.3395 28 1 2.9805 3.9214 -2.4479 29 1 2.4355 4.4517 -0.8281 30 1 7.5794 4.6096 1.1991 31 1 6.1459 5.2213 2.0589 32 1 6.2231 3.5146 1.5593 33 1 6.2434 6.9395 0.1744 34 1 5.4913 6.4287 -1.3559 35 1 2.0075 8.9461 0.5513 36 1 4.0500 2.2152 1.0825 37 1 4.2624 1.0799 -0.2795 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451734123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:51 Heat of formation + Delta-G solvation = -89.232928 kcal Electronic energy + Delta-G solvation = -20835.417566 eV Core-core repulsion = 17672.185419 eV Total energy + Delta-G solvation = -3163.232147 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.36781 -38.42096 -37.32395 -36.99296 -34.49156 -32.12739 -30.33343 -30.07250 -29.57696 -26.81854 -24.00371 -23.50909 -22.47599 -20.02592 -19.24817 -18.81497 -18.42030 -17.62984 -17.28648 -16.67777 -16.17958 -15.56429 -15.09377 -14.88008 -14.79530 -14.60590 -14.39913 -14.17455 -14.08448 -13.93105 -13.60941 -13.49828 -13.32059 -13.17551 -13.03839 -13.02350 -12.70096 -12.43505 -12.31031 -12.22762 -12.01499 -11.95451 -11.64639 -10.84224 -10.76173 -10.07484 -9.78845 -8.67849 -8.28068 -6.31615 -0.46047 0.66577 1.37457 1.41247 1.47886 1.60360 1.89666 2.35279 2.48206 3.05652 3.09966 3.41467 3.57390 3.94296 4.06580 4.24281 4.32944 4.39994 4.42257 4.50755 4.63079 4.67416 4.72507 4.76738 4.83976 4.90954 4.95776 4.98446 5.04567 5.20086 5.27272 5.35647 5.47013 5.76766 6.31545 6.72457 7.32492 8.86449 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.017594 B = 0.005909 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.068175 B = 4737.490578 C = 5638.295844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.273 6.273 3 C -0.059 4.059 4 H 0.105 0.895 5 C -0.109 4.109 6 C 0.118 3.882 7 N -1.014 6.014 8 S 2.813 3.187 9 O -0.997 6.997 10 O -1.004 7.004 11 N -0.998 5.998 12 C 0.096 3.904 13 C 0.218 3.782 14 C -0.533 4.533 15 H 0.056 0.944 16 C 0.027 3.973 17 N -0.933 5.933 18 Si 0.920 3.080 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.246 1.246 22 C 0.143 3.857 23 H 0.087 0.913 24 H 0.115 0.885 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.267 0.733 36 H 0.077 0.923 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 -12.703 -0.331 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.047 6.047 3 C -0.189 4.189 4 H 0.124 0.876 5 C -0.150 4.150 6 C -0.009 4.009 7 N -0.855 5.855 8 S 2.823 3.177 9 O -0.982 6.982 10 O -0.989 6.989 11 N -0.839 5.839 12 C -0.049 4.049 13 C 0.093 3.907 14 C -0.572 4.572 15 H 0.074 0.926 16 C -0.173 4.173 17 N -0.573 5.573 18 Si 0.744 3.256 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.170 1.170 22 C 0.017 3.983 23 H 0.106 0.894 24 H 0.134 0.866 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.922 -13.702 -0.970 13.767 hybrid contribution -0.942 2.179 0.133 2.378 sum -1.864 -11.522 -0.837 11.702 Atomic orbital electron populations 1.23467 0.90998 1.07600 1.06035 1.86868 1.10859 1.08970 1.97983 1.24132 0.98047 0.94673 1.02046 0.87634 1.23129 0.99903 0.96054 0.95918 1.22065 0.83048 0.97224 0.98532 1.58856 1.23207 1.44105 1.59306 1.00772 0.72058 0.71959 0.72931 1.93533 1.62246 1.56216 1.86178 1.93514 1.87067 1.76314 1.41984 1.57490 1.74491 1.20364 1.31518 1.21512 0.97725 1.01068 0.84590 1.19403 0.95624 0.79013 0.96613 1.21576 1.01576 0.97956 1.36086 0.92567 1.25552 0.95418 1.00496 0.95801 1.69995 1.17228 1.23137 1.46942 0.86121 0.80923 0.79127 0.79416 1.19708 1.20620 1.16956 1.21454 0.94172 0.88577 0.94127 0.89356 0.86610 0.89695 0.88783 0.87794 0.90632 0.91930 0.91545 0.90610 0.90957 0.93489 0.94770 0.92431 0.90426 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.69 113.37 1.21 -0.37 16 2 S -0.27 -5.86 21.66 -56.49 -1.22 -7.08 16 3 C -0.06 -1.42 3.45 31.78 0.11 -1.31 16 4 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 5 C -0.11 -2.61 6.48 31.99 0.21 -2.41 16 6 C 0.12 3.86 7.10 86.86 0.62 4.48 16 7 N -1.01 -34.85 3.75 -506.44 -1.90 -36.75 16 8 S 2.81 110.96 6.31 -56.49 -0.36 110.60 16 9 O -1.00 -39.97 16.79 -128.00 -2.15 -42.12 16 10 O -1.00 -45.31 16.01 -128.00 -2.05 -47.36 16 11 N -1.00 -39.62 3.23 -543.18 -1.75 -41.37 16 12 C 0.10 3.10 10.31 127.77 1.32 4.42 16 13 C 0.22 9.93 4.48 85.63 0.38 10.31 16 14 C -0.53 -27.64 9.94 25.60 0.25 -27.38 16 15 H 0.06 3.14 8.06 -2.91 -0.02 3.11 16 16 C 0.03 1.45 5.47 84.66 0.46 1.91 16 17 N -0.93 -53.59 13.96 21.45 0.30 -53.29 16 18 Si 0.92 41.48 27.47 68.60 1.88 43.36 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.25 -10.30 6.54 99.48 0.65 -9.65 16 22 C 0.14 4.11 6.61 86.73 0.57 4.68 16 23 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 24 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.09 2.10 8.04 -2.39 -0.02 2.08 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 2.54 7.78 -2.39 -0.02 2.52 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16 32 H 0.07 2.06 7.79 -2.39 -0.02 2.04 16 33 H 0.05 2.05 7.16 -2.38 -0.02 2.03 16 34 H 0.03 1.63 6.34 -2.39 -0.02 1.61 16 35 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 2.16 7.79 -2.39 -0.02 2.14 16 Total: -1.00 -65.52 328.95 -1.12 -66.64 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.99 Total: 13.06 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 5.14 Total: -5.68 kcal Atomic # 7 Polarization: -128.06 SS G_CDS: -3.35 Total: -131.42 kcal Atomic # 8 Polarization: -85.29 SS G_CDS: -4.20 Total: -89.49 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.88 Total: 43.36 kcal Atomic # 16 Polarization: 105.10 SS G_CDS: -1.58 Total: 103.52 kcal Total: -65.52 -1.12 -66.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451734123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.593 kcal (2) G-P(sol) polarization free energy of solvation -65.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds