Wall clock time and date at job start Tue Mar 31 2020 04:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00001 * 2 1 4 4 C 1.53002 * 109.46890 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47211 * 64.99994 * 4 3 2 6 6 C 1.46496 * 120.00221 * 275.00075 * 5 4 3 7 7 C 1.50698 * 109.47196 * 274.99939 * 6 5 4 8 8 H 1.08002 * 120.00016 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00338 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99806 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00437 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46727 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46870 * 119.99689 * 11 9 7 14 14 H 1.48501 * 109.47409 * 240.00078 * 11 9 7 15 15 S 1.65597 * 119.99859 * 95.00015 * 5 4 3 16 16 O 1.42102 * 106.40603 * 336.46007 * 15 5 4 17 17 O 1.42103 * 106.40470 * 203.53769 * 15 5 4 18 18 N 1.65602 * 107.21990 * 89.99901 * 15 5 4 19 19 C 1.47968 * 126.94007 * 269.98179 * 18 15 5 20 20 C 1.54932 * 102.75491 * 201.26729 * 19 18 15 21 21 O 1.44640 * 102.34386 * 323.88157 * 20 19 18 22 22 C 1.43735 * 105.57950 * 37.53715 * 21 20 19 23 23 H 1.09005 * 109.47461 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47063 * 299.99636 * 1 2 3 25 25 H 1.09001 * 109.47226 * 59.99902 * 1 2 3 26 26 H 1.08999 * 109.46935 * 60.00775 * 3 2 1 27 27 H 1.09000 * 109.47495 * 300.00066 * 3 2 1 28 28 H 1.09003 * 109.47057 * 304.99965 * 4 3 2 29 29 H 1.08996 * 109.47098 * 185.00112 * 4 3 2 30 30 H 1.08999 * 109.47345 * 34.99888 * 6 5 4 31 31 H 1.08997 * 109.47658 * 155.00132 * 6 5 4 32 32 H 0.97003 * 119.99979 * 180.02562 * 10 9 7 33 33 H 1.08994 * 110.75552 * 319.58570 * 19 18 15 34 34 H 1.09000 * 110.75439 * 82.95595 * 19 18 15 35 35 H 1.08995 * 110.83014 * 205.67285 * 20 19 18 36 36 H 1.08994 * 110.82746 * 82.09774 * 20 19 18 37 37 H 1.08999 * 109.71694 * 94.57913 * 22 21 20 38 38 H 1.08996 * 109.71508 * 215.17685 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.0003 -0.8951 -1.3782 7 6 5.2992 -1.4247 -0.8276 8 1 6.0332 -0.7424 -0.4248 9 6 5.5512 -2.7802 -0.8389 10 7 4.6576 -3.6111 -1.3298 11 14 7.1616 -3.4367 -0.1570 12 1 7.9896 -2.3054 0.3326 13 1 6.8810 -4.3666 0.9663 14 1 7.8941 -4.1601 -1.2273 15 16 4.4453 1.5129 -2.5262 16 8 3.8178 2.7742 -2.3401 17 8 4.2757 0.7257 -3.6970 18 7 6.0733 1.7730 -2.3695 19 6 6.7308 2.8822 -1.6436 20 6 8.1400 2.9235 -2.2860 21 8 8.4129 1.5230 -2.5232 22 6 7.1583 0.9480 -2.9249 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6887 1.8463 0.8901 27 1 1.6886 1.8464 -0.8900 28 1 3.8514 0.5681 0.8410 29 1 3.9785 2.1764 0.0889 30 1 3.1677 -1.3220 -0.8190 31 1 3.9118 -1.1710 -2.4289 32 1 4.8346 -4.5648 -1.3374 33 1 6.2022 3.8205 -1.8112 34 1 6.7982 2.6605 -0.5785 35 1 8.8684 3.3487 -1.5955 36 1 8.1225 3.4793 -3.2234 37 1 7.0909 0.9357 -4.0127 38 1 7.0800 -0.0688 -2.5402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451755617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:22 Heat of formation + Delta-G solvation = -173.828048 kcal Electronic energy + Delta-G solvation = -23701.523587 eV Core-core repulsion = 20091.870250 eV Total energy + Delta-G solvation = -3609.653338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43256 -39.08545 -38.40279 -37.02484 -36.94327 -34.65675 -34.54020 -31.08109 -30.68224 -28.49477 -26.99770 -25.48153 -24.59213 -23.84598 -23.28081 -20.28109 -19.03611 -18.81939 -18.30018 -17.80762 -17.30703 -17.08663 -16.53617 -16.47547 -16.21988 -15.91097 -15.65672 -15.20004 -14.65783 -14.47545 -14.12716 -13.92438 -13.74869 -13.56310 -13.42020 -13.31328 -13.29620 -13.09294 -12.97353 -12.71430 -12.56370 -12.35168 -12.27063 -11.99512 -11.88393 -11.63594 -10.96495 -10.58789 -10.49217 -10.14636 -9.76146 -8.13183 -6.26211 -0.49249 1.42263 1.44682 1.55565 1.85222 2.42757 2.46722 2.86157 2.97898 3.12911 3.19352 3.80183 3.95215 4.13166 4.18464 4.23131 4.33357 4.39877 4.44455 4.48492 4.55343 4.58764 4.72664 4.80767 4.83662 4.88225 4.92811 5.00567 5.09977 5.44453 5.59321 5.76050 5.80018 5.95725 6.15634 6.39331 6.86897 7.43153 8.95054 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.009763 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.909537 B = 2867.245734 C = 4836.542669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.041 3.959 4 C 0.126 3.874 5 N -0.987 5.987 6 C 0.265 3.735 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.012 3.988 10 N -0.926 5.926 11 Si 0.955 3.045 12 H -0.261 1.261 13 H -0.281 1.281 14 H -0.283 1.283 15 S 2.818 3.182 16 O -0.988 6.988 17 O -1.010 7.010 18 N -1.042 6.042 19 C 0.077 3.923 20 C 0.041 3.959 21 O -0.385 6.385 22 C 0.290 3.710 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.036 0.964 31 H 0.009 0.991 32 H 0.264 0.736 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 14.728 3.391 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.037 4.037 4 C 0.000 4.000 5 N -0.828 5.828 6 C 0.142 3.858 7 C -0.578 4.578 8 H 0.087 0.913 9 C -0.187 4.187 10 N -0.566 5.566 11 Si 0.780 3.220 12 H -0.184 1.184 13 H -0.207 1.207 14 H -0.209 1.209 15 S 2.827 3.173 16 O -0.972 6.972 17 O -0.994 6.994 18 N -0.887 5.887 19 C -0.047 4.047 20 C -0.036 4.036 21 O -0.302 6.302 22 C 0.127 3.873 23 H 0.102 0.898 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.129 0.871 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.946 14.582 2.669 14.855 hybrid contribution 0.298 -0.859 0.336 0.969 sum 1.244 13.723 3.005 14.104 Atomic orbital electron populations 1.22888 0.80378 1.03171 1.00712 1.88050 1.20844 1.28504 1.95469 1.23184 0.94377 0.84783 1.01370 1.21416 0.92682 0.98792 0.87118 1.57607 1.78617 1.17774 1.28795 1.18746 0.97138 0.73846 0.96115 1.21863 1.03093 0.92413 1.40393 0.91306 1.25766 0.99979 0.97360 0.95624 1.70092 1.36404 1.03430 1.46685 0.85553 0.79802 0.78598 0.78005 1.18440 1.20677 1.20884 1.00681 0.71610 0.71991 0.73016 1.93528 1.73959 1.42600 1.87150 1.93535 1.85519 1.71784 1.48595 1.59907 1.23613 1.37513 1.67685 1.23151 0.94182 0.89759 0.97605 1.24160 0.95654 0.81958 1.01784 1.89084 1.28217 1.23724 1.89183 1.22596 0.75044 0.93091 0.96605 0.89755 0.92014 0.94037 0.89305 0.93878 0.89689 0.87091 0.94586 0.97264 0.92725 0.87107 0.89359 0.84490 0.89688 0.91335 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.99 9.02 -148.98 -1.34 -16.33 16 3 C 0.04 1.26 6.28 71.98 0.45 1.72 16 4 C 0.13 4.15 5.79 86.38 0.50 4.65 16 5 N -0.99 -40.89 2.81 -519.87 -1.46 -42.35 16 6 C 0.27 13.76 5.27 85.63 0.45 14.21 16 7 C -0.54 -28.66 9.02 25.60 0.23 -28.43 16 8 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.01 0.67 5.46 84.65 0.46 1.13 16 10 N -0.93 -54.95 13.29 21.45 0.28 -54.67 16 11 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 15 S 2.82 111.19 6.36 -56.49 -0.36 110.83 16 16 O -0.99 -36.97 16.65 -128.00 -2.13 -39.10 16 17 O -1.01 -48.40 16.34 -128.00 -2.09 -50.49 16 18 N -1.04 -34.55 3.83 -621.71 -2.38 -36.93 16 19 C 0.08 1.79 7.45 86.76 0.65 2.43 16 20 C 0.04 0.83 7.89 72.64 0.57 1.41 16 21 O -0.39 -11.63 11.63 -148.98 -1.73 -13.36 16 22 C 0.29 10.06 7.95 127.64 1.02 11.08 16 23 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 29 H 0.11 2.86 7.61 -2.39 -0.02 2.85 16 30 H 0.04 2.02 6.60 -2.39 -0.02 2.01 16 31 H 0.01 0.55 6.91 -2.39 -0.02 0.53 16 32 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.11 2.11 7.99 -2.39 -0.02 2.09 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.08 3.13 7.78 -2.39 -0.02 3.11 16 Total: -1.00 -72.60 331.31 -2.56 -75.16 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.05 Total: 11.77 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 5.58 Total: 10.12 kcal Atomic # 7 Polarization: -130.39 SS G_CDS: -3.56 Total: -133.95 kcal Atomic # 8 Polarization: -111.98 SS G_CDS: -7.30 Total: -119.28 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 111.19 SS G_CDS: -0.36 Total: 110.83 kcal Total: -72.60 -2.56 -75.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451755617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.665 kcal (2) G-P(sol) polarization free energy of solvation -72.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds