Wall clock time and date at job start Tue Mar 31 2020 03:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46854 * 128.53909 * 3 2 1 5 5 C 1.37098 * 120.00439 * 263.92691 * 4 3 2 6 6 H 1.08000 * 120.00316 * 199.75843 * 5 4 3 7 7 C 1.38955 * 119.99701 * 19.75707 * 5 4 3 8 8 N 1.31416 * 119.99858 * 21.74871 * 7 5 4 9 9 Si 1.86798 * 119.99999 * 201.74736 * 7 5 4 10 10 H 1.48496 * 109.47139 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46672 * 120.00106 * 9 7 5 12 12 H 1.48493 * 109.47197 * 240.00276 * 9 7 5 13 13 C 1.34786 * 120.00000 * 83.92683 * 4 3 2 14 14 O 1.21290 * 120.00079 * 179.97438 * 13 4 3 15 15 C 1.50700 * 119.99705 * 0.02562 * 13 4 3 16 16 C 1.52997 * 109.46803 * 179.97438 * 15 13 4 17 17 N 1.46501 * 109.47023 * 180.02562 * 16 15 13 18 18 C 1.36319 * 121.37918 * 269.74105 * 17 16 15 19 19 C 1.50701 * 121.64374 * 0.02562 * 18 17 16 20 20 C 1.32561 * 116.70771 * 179.79126 * 18 17 16 21 21 S 1.77224 * 105.32120 * 0.42459 * 20 18 17 22 22 C 1.34241 * 121.38304 * 90.02638 * 17 16 15 23 23 O 1.21829 * 127.05776 * 359.93625 * 22 17 16 24 24 H 4.40644 * 5.51345 * 180.02562 * 4 1 2 25 25 H 1.08995 * 109.46964 * 8.54214 * 3 2 1 26 26 H 1.08996 * 109.47194 * 248.53874 * 3 2 1 27 27 H 0.96997 * 119.99894 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47215 * 299.99853 * 15 13 4 29 29 H 1.09000 * 109.47382 * 60.00039 * 15 13 4 30 30 H 1.09005 * 109.47239 * 299.99920 * 16 15 13 31 31 H 1.09003 * 109.47465 * 60.00193 * 16 15 13 32 32 H 1.08997 * 109.47349 * 89.99799 * 19 18 17 33 33 H 1.09005 * 109.47043 * 210.00629 * 19 18 17 34 34 H 1.09005 * 109.47267 * 329.99713 * 19 18 17 35 35 H 1.07997 * 127.34167 * 180.16798 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.8614 -1.0804 5 6 3.4811 0.3148 -2.2888 6 1 4.1241 0.8604 -2.9635 7 6 3.0057 -0.9413 -2.6453 8 7 1.9249 -1.4216 -2.0726 9 14 3.9029 -1.9469 -3.9388 10 1 5.0823 -1.1875 -4.4260 11 1 4.3528 -3.2307 -3.3433 12 1 2.9871 -2.2222 -5.0749 13 6 3.2415 2.1909 -0.8864 14 8 3.6459 2.9035 -1.7807 15 6 2.8605 2.7917 0.4421 16 6 3.0757 4.3058 0.3975 17 7 2.7058 4.8899 1.6891 18 6 1.4365 5.3216 1.9355 19 6 0.3509 5.2202 0.8952 20 6 1.2030 5.8307 3.1370 21 16 2.7538 5.7462 3.9908 22 6 3.6042 5.0273 2.6771 23 8 4.7796 4.7082 2.6502 24 1 -1.0501 0.0000 0.0004 25 1 3.0098 -1.0154 -0.1526 26 1 3.0093 0.3768 0.9564 27 1 1.5928 -2.2983 -2.3217 28 1 1.8117 2.5794 0.6495 29 1 3.4808 2.3600 1.2275 30 1 4.1246 4.5178 0.1903 31 1 2.4556 4.7380 -0.3880 32 1 -0.1600 4.2627 0.9953 33 1 -0.3645 6.0305 1.0364 34 1 0.7922 5.2944 -0.0988 35 1 0.2682 6.2184 3.5138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490996898.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:28 Heat of formation + Delta-G solvation = 11.748763 kcal Electronic energy + Delta-G solvation = -21270.416916 eV Core-core repulsion = 17976.119712 eV Total energy + Delta-G solvation = -3294.297204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -42.09960 -40.51189 -38.68101 -37.19209 -34.53378 -33.86811 -33.05094 -32.14381 -29.29449 -28.20736 -26.88962 -25.54357 -24.04495 -21.45460 -20.77385 -19.70600 -19.04709 -18.66783 -18.29011 -17.52495 -17.30870 -16.54532 -16.42706 -15.96069 -15.92441 -15.31856 -14.86440 -14.72308 -14.49652 -14.32959 -14.05899 -13.86761 -13.65378 -13.50308 -13.11013 -12.81706 -12.56306 -12.34904 -12.25473 -12.15268 -12.05025 -11.20979 -11.19678 -11.09627 -10.74318 -10.61039 -10.36373 -9.85984 -8.94117 -8.35023 -5.96965 -0.11846 0.38831 0.86624 1.14123 1.33029 1.42240 1.54591 1.72526 1.84538 2.10935 2.31555 2.37505 3.00957 3.11897 3.59055 3.71222 3.75597 3.84363 4.03606 4.23705 4.30787 4.41650 4.57824 4.64853 4.70203 4.77268 4.80941 4.88830 5.03241 5.30035 5.41178 5.45416 5.78461 6.01902 6.24471 6.38804 7.09735 7.14345 7.35950 7.91105 8.63397 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.004175 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.732210 B = 6705.419915 C = 7108.454246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.160 4.160 3 C 0.233 3.767 4 N -0.447 5.447 5 C -0.354 4.354 6 H 0.075 0.925 7 C 0.007 3.993 8 N -0.866 5.866 9 Si 0.981 3.019 10 H -0.276 1.276 11 H -0.267 1.267 12 H -0.278 1.278 13 C 0.446 3.554 14 O -0.624 6.624 15 C -0.126 4.126 16 C 0.130 3.870 17 N -0.530 5.530 18 C 0.088 3.912 19 C -0.102 4.102 20 C -0.218 4.218 21 S 0.014 5.986 22 C 0.455 3.545 23 O -0.524 6.524 24 H 0.237 0.763 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.273 0.727 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.678 9.575 11.351 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.161 4.161 3 C 0.111 3.889 4 N -0.165 5.165 5 C -0.482 4.482 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.503 5.503 9 Si 0.805 3.195 10 H -0.200 1.200 11 H -0.191 1.191 12 H -0.203 1.203 13 C 0.235 3.765 14 O -0.512 6.512 15 C -0.167 4.167 16 C 0.004 3.996 17 N -0.250 5.250 18 C -0.021 4.021 19 C -0.161 4.161 20 C -0.355 4.355 21 S 0.257 5.743 22 C 0.139 3.861 23 O -0.409 6.409 24 H 0.253 0.747 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.141 0.859 34 H 0.086 0.914 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -7.429 9.872 12.119 17.307 hybrid contribution 0.224 -1.270 -2.184 2.536 sum -7.205 8.602 9.935 14.987 Atomic orbital electron populations 1.25141 0.96210 1.01605 1.02092 1.23245 0.94720 0.99466 0.98704 1.18219 0.85246 0.96473 0.88966 1.43862 1.55631 1.04846 1.12120 1.19567 1.29778 1.01954 0.96862 0.90704 1.25949 0.95236 0.98291 1.00222 1.70165 1.17959 1.18729 1.43420 0.85074 0.78346 0.78140 0.77937 1.20031 1.19148 1.20344 1.20528 0.83608 0.82182 0.90159 1.90496 1.52974 1.60503 1.47194 1.21668 1.03942 0.95561 0.95482 1.21384 1.02824 0.92256 0.83091 1.46227 1.09614 1.54060 1.15118 1.19998 0.85098 0.98312 0.98740 1.20948 0.94570 1.05875 0.94730 1.25438 1.01522 1.14227 0.94324 1.84934 1.05421 1.66304 1.17677 1.22142 0.89441 0.85357 0.89128 1.90934 1.14770 1.55674 1.79475 0.74692 0.89313 0.89318 0.91722 0.87853 0.89765 0.90702 0.87128 0.88988 0.85851 0.91385 0.74973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.45 19.25 74.32 1.43 -7.02 16 2 C -0.16 -6.66 10.75 31.13 0.33 -6.33 16 3 C 0.23 10.13 4.91 84.58 0.42 10.55 16 4 N -0.45 -22.53 2.60 -645.41 -1.68 -24.20 16 5 C -0.35 -19.69 9.28 84.04 0.78 -18.91 16 6 H 0.08 4.50 7.42 -2.91 -0.02 4.48 16 7 C 0.01 0.38 4.83 84.93 0.41 0.79 16 8 N -0.87 -44.03 9.59 21.67 0.21 -43.82 16 9 Si 0.98 41.48 29.61 68.60 2.03 43.51 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 12 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 13 C 0.45 21.39 7.56 87.66 0.66 22.06 16 14 O -0.62 -34.29 15.65 -3.06 -0.05 -34.34 16 15 C -0.13 -4.54 4.63 29.85 0.14 -4.40 16 16 C 0.13 4.28 4.56 86.38 0.39 4.67 16 17 N -0.53 -14.76 2.60 -643.41 -1.68 -16.44 16 18 C 0.09 1.72 6.59 40.71 0.27 1.98 16 19 C -0.10 -1.47 9.69 71.24 0.69 -0.78 16 20 C -0.22 -3.32 11.24 66.67 0.75 -2.57 16 21 S 0.01 0.31 22.97 -56.49 -1.30 -0.99 16 22 C 0.46 14.40 8.27 129.87 1.07 15.47 16 23 O -0.52 -20.93 17.55 -4.76 -0.08 -21.01 16 24 H 0.24 6.37 7.80 -4.41 -0.03 6.34 16 25 H 0.09 4.12 6.60 -2.39 -0.02 4.10 16 26 H 0.09 3.26 6.69 -2.39 -0.02 3.24 16 27 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 28 H 0.10 3.37 7.49 -2.39 -0.02 3.36 16 29 H 0.08 3.02 7.42 -2.39 -0.02 3.01 16 30 H 0.07 2.87 7.76 -2.38 -0.02 2.85 16 31 H 0.11 3.40 6.07 -2.39 -0.01 3.38 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.12 0.91 8.10 -2.38 -0.02 0.89 16 34 H 0.07 1.20 6.18 -2.38 -0.01 1.18 16 35 H 0.23 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -71.86 319.52 5.92 -65.93 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.12 Total: 15.85 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 7.35 Total: 15.51 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -3.14 Total: -84.46 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -0.13 Total: -55.35 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.30 Total: -0.99 kcal Total: -71.86 5.92 -65.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490996898.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.681 kcal (2) G-P(sol) polarization free energy of solvation -71.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds