Wall clock time and date at job start Tue Mar 31 2020 03:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46508 * 109.47071 * 148.72244 * 3 2 1 5 5 C 1.37100 * 119.99769 * 85.64710 * 4 3 2 6 6 H 1.07998 * 119.99423 * 175.65967 * 5 4 3 7 7 C 1.38945 * 120.00361 * 355.66405 * 5 4 3 8 8 N 1.31414 * 119.99980 * 335.41026 * 7 5 4 9 9 Si 1.86801 * 120.00269 * 155.41556 * 7 5 4 10 10 H 1.48502 * 109.47036 * 59.99487 * 9 7 5 11 11 H 1.48497 * 109.47188 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46802 * 299.99948 * 9 7 5 13 13 C 1.34772 * 119.99569 * 265.64979 * 4 3 2 14 14 O 1.21289 * 120.00579 * 4.40457 * 13 4 3 15 15 C 1.50706 * 119.99863 * 184.40073 * 13 4 3 16 16 C 1.53654 * 112.54170 * 300.23412 * 15 13 4 17 17 C 1.54070 * 101.00913 * 268.70509 * 16 15 13 18 18 C 1.51122 * 104.43535 * 334.30946 * 17 16 15 19 19 O 1.21280 * 124.73221 * 190.80924 * 18 17 16 20 20 N 1.35826 * 110.54216 * 10.78749 * 18 17 16 21 21 C 1.46842 * 138.49246 * 194.78620 * 20 18 17 22 22 C 1.54432 * 113.56049 * 164.33887 * 21 20 18 23 23 S 1.83553 * 112.61129 * 66.59208 * 15 13 4 24 24 H 4.40645 * 5.51472 * 179.97438 * 4 1 2 25 25 H 1.08997 * 109.47047 * 268.71640 * 3 2 1 26 26 H 1.08997 * 109.47262 * 28.72114 * 3 2 1 27 27 H 0.96996 * 119.99770 * 180.02562 * 8 7 5 28 28 H 1.09000 * 111.18649 * 27.30593 * 16 15 13 29 29 H 1.08996 * 111.18581 * 151.61692 * 16 15 13 30 30 H 1.08999 * 110.80330 * 215.34892 * 17 16 15 31 31 H 1.09000 * 110.08942 * 92.91415 * 17 16 15 32 32 H 1.09001 * 108.68089 * 285.41717 * 21 20 18 33 33 H 1.09004 * 108.67539 * 43.44362 * 21 20 18 34 34 H 1.08998 * 110.98257 * 100.61408 * 22 21 20 35 35 H 1.08997 * 110.98987 * 224.42008 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1814 -0.7171 5 6 3.2768 2.3742 -0.0564 6 1 3.7021 3.2261 -0.5660 7 6 2.8747 2.4869 1.2688 8 7 1.9546 1.6797 1.7472 9 14 3.6418 3.7859 2.3704 10 1 3.3835 5.1329 1.8012 11 1 3.0448 3.6995 3.7274 12 1 5.1066 3.5582 2.4581 13 6 3.4419 1.0950 -2.0263 14 8 3.2403 0.0625 -2.6300 15 6 4.0369 2.2814 -2.7403 16 6 3.1181 3.5124 -2.7039 17 6 2.3133 3.3174 -4.0032 18 6 3.2208 2.4948 -4.8885 19 8 3.0306 2.2847 -6.0677 20 7 4.2793 2.0239 -4.1795 21 6 5.5941 1.4221 -4.4355 22 6 6.5288 1.4351 -3.2062 23 16 5.7188 2.6985 -2.1351 24 1 -1.0502 -0.0004 0.0000 25 1 3.0093 0.0238 1.0274 26 1 3.0097 -0.9004 -0.4938 27 1 1.6736 1.7587 2.6722 28 1 2.4733 3.4968 -1.8252 29 1 3.6949 4.4360 -2.7503 30 1 2.0933 4.2774 -4.4700 31 1 1.3908 2.7756 -3.7945 32 1 5.4495 0.3895 -4.7532 33 1 6.0774 1.9705 -5.2441 34 1 6.5442 0.4610 -2.7174 35 1 7.5355 1.7465 -3.4845 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491014730.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:39 Heat of formation + Delta-G solvation = 35.843325 kcal Electronic energy + Delta-G solvation = -22504.359955 eV Core-core repulsion = 19211.107570 eV Total energy + Delta-G solvation = -3293.252385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44798 -38.40362 -36.31110 -35.18915 -33.75856 -31.98454 -31.56452 -29.36672 -28.17903 -26.12987 -24.91612 -23.74369 -21.82709 -20.14235 -19.01022 -18.18908 -17.43925 -16.92537 -16.03089 -15.49284 -15.37525 -14.93294 -14.58593 -14.48822 -13.96064 -13.88071 -13.45267 -13.24637 -12.95661 -12.72596 -12.31550 -12.24543 -12.06058 -11.74683 -11.61509 -11.11824 -11.03796 -10.85850 -10.59635 -10.44780 -10.15857 -9.59829 -9.49389 -9.39962 -9.14555 -8.77604 -8.21293 -8.17446 -7.39199 -6.58696 -4.05726 1.82710 2.24678 2.77303 2.96810 3.04356 3.12833 3.16462 3.61192 3.79770 4.01727 4.21747 4.34740 4.65562 4.69327 4.82315 4.91354 4.97253 5.26440 5.44347 5.50499 5.62944 5.65112 5.78580 5.87459 5.89010 6.17928 6.38139 6.39646 6.53339 6.80863 7.08690 7.19531 7.34809 7.37846 8.09689 8.35340 8.81320 8.92126 9.17723 9.58497 10.36514 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.007686 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.300000 B = 3642.100395 C = 4260.410275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.095 4.095 3 C 0.240 3.760 4 N -0.412 5.412 5 C -0.341 4.341 6 H 0.111 0.889 7 C 0.046 3.954 8 N -0.836 5.836 9 Si 0.913 3.087 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.452 3.548 14 O -0.591 6.591 15 C 0.181 3.819 16 C -0.117 4.117 17 C -0.143 4.143 18 C 0.551 3.449 19 O -0.533 6.533 20 N -0.603 5.603 21 C 0.131 3.869 22 C -0.086 4.086 23 S -0.234 6.234 24 H 0.197 0.803 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.275 0.725 28 H 0.128 0.872 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 3.075 -2.549 6.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.097 4.097 3 C 0.118 3.882 4 N -0.128 5.128 5 C -0.469 4.469 6 H 0.128 0.872 7 C -0.163 4.163 8 N -0.471 5.471 9 Si 0.739 3.261 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.192 1.192 13 C 0.237 3.763 14 O -0.478 6.478 15 C -0.018 4.018 16 C -0.156 4.156 17 C -0.184 4.184 18 C 0.340 3.660 19 O -0.409 6.409 20 N -0.340 5.340 21 C 0.009 3.991 22 C -0.235 4.235 23 S -0.004 6.004 24 H 0.214 0.786 25 H 0.129 0.871 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.146 0.854 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.293 3.183 -2.607 6.704 hybrid contribution -0.263 -0.135 0.119 0.319 sum 5.030 3.048 -2.488 6.386 Atomic orbital electron populations 1.24174 0.95293 1.04036 1.05584 1.22927 0.94101 0.96776 0.95889 1.18283 0.84496 0.87196 0.98223 1.43614 1.53078 1.09809 1.06291 1.19738 1.41731 0.90236 0.95200 0.87152 1.25241 0.94635 0.98627 0.97756 1.70161 1.22723 1.37846 1.16414 0.86195 0.80191 0.80699 0.79064 1.19540 1.20822 1.19245 1.19255 0.85973 0.88484 0.82595 1.90596 1.60659 1.30767 1.65730 1.23943 0.95309 0.97971 0.84591 1.22723 0.98040 0.95114 0.99756 1.22260 0.99403 1.01277 0.95412 1.21024 0.80052 0.78240 0.86684 1.90661 1.74084 1.60207 1.15996 1.49436 1.17199 1.61492 1.05892 1.21370 0.81481 0.99361 0.96924 1.24583 1.01107 1.01820 0.95984 1.88286 1.03918 1.49091 1.59116 0.78559 0.87090 0.91261 0.91441 0.85367 0.88974 0.87306 0.87379 0.90548 0.90496 0.88142 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.86 19.25 29.55 0.57 -5.29 16 2 C -0.10 -2.22 11.32 -37.12 -0.42 -2.64 16 3 C 0.24 5.49 5.24 -6.82 -0.04 5.45 16 4 N -0.41 -9.46 2.59 -117.93 -0.31 -9.77 16 5 C -0.34 -7.65 7.34 -14.93 -0.11 -7.76 16 6 H 0.11 2.36 4.29 -52.49 -0.23 2.13 16 7 C 0.05 1.03 4.98 -17.47 -0.09 0.94 16 8 N -0.84 -19.55 8.86 55.50 0.49 -19.06 16 9 Si 0.91 17.84 29.62 -169.99 -5.03 12.81 16 10 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 11 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 13 C 0.45 10.26 6.76 -10.98 -0.07 10.19 16 14 O -0.59 -15.08 16.18 5.55 0.09 -14.99 16 15 C 0.18 3.47 0.30 -67.80 -0.02 3.45 16 16 C -0.12 -1.99 5.06 -25.83 -0.13 -2.12 16 17 C -0.14 -2.30 6.78 -27.12 -0.18 -2.48 16 18 C 0.55 10.67 8.38 -10.30 -0.09 10.58 16 19 O -0.53 -11.66 18.03 5.56 0.10 -11.56 16 20 N -0.60 -11.28 2.91 -159.76 -0.47 -11.75 16 21 C 0.13 2.05 7.25 -3.10 -0.02 2.03 16 22 C -0.09 -1.20 7.55 37.91 0.29 -0.92 16 23 S -0.23 -4.03 20.80 -107.50 -2.24 -6.27 16 24 H 0.20 3.46 7.80 -54.08 -0.42 3.04 16 25 H 0.11 2.55 6.30 -51.93 -0.33 2.22 16 26 H 0.07 1.55 7.36 -51.93 -0.38 1.17 16 27 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 28 H 0.13 2.37 5.70 -51.93 -0.30 2.07 16 29 H 0.09 1.37 7.90 -51.93 -0.41 0.96 16 30 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -29.63 307.05 -6.78 -36.41 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -3.73 Total: 8.10 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -0.32 Total: 11.44 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: -0.28 Total: -40.58 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: 0.19 Total: -26.55 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -2.24 Total: -6.27 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.63 -6.78 -36.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014730.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.252 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds