Wall clock time and date at job start Tue Mar 31 2020 03:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30954 * 123.07853 * 2 1 4 4 C 1.29356 * 117.49046 * 180.35041 * 3 2 1 5 5 S 1.70909 * 110.65535 * 359.69506 * 4 3 2 6 6 C 1.37068 * 123.07237 * 179.79782 * 2 1 3 7 7 C 1.41729 * 126.19331 * 359.96906 * 6 2 1 8 8 C 1.35563 * 119.99744 * 227.39517 * 7 6 2 9 9 C 1.41540 * 120.00050 * 7.59726 * 8 7 6 10 10 O 1.21782 * 120.00342 * 5.75337 * 9 8 7 11 11 N 1.34779 * 120.00047 * 185.75513 * 9 8 7 12 12 C 1.47069 * 136.05863 * 180.02562 * 11 9 8 13 13 C 1.53501 * 88.04845 * 207.12101 * 12 11 9 14 14 O 1.42905 * 114.20426 * 87.54788 * 13 12 11 15 15 C 1.50693 * 114.21136 * 220.37451 * 13 12 11 16 16 H 1.08004 * 119.99936 * 0.02562 * 15 13 12 17 17 C 1.37869 * 120.00414 * 180.02562 * 15 13 12 18 18 N 1.31519 * 120.00250 * 180.02562 * 17 15 13 19 19 Si 1.86800 * 119.99997 * 359.97438 * 17 15 13 20 20 H 1.48503 * 109.46977 * 90.00232 * 19 17 15 21 21 H 1.48501 * 109.47336 * 210.00172 * 19 17 15 22 22 H 1.48501 * 109.47288 * 330.00389 * 19 17 15 23 23 C 1.47072 * 136.05368 * 0.04830 * 11 9 8 24 24 H 1.09001 * 109.47202 * 270.19901 * 1 2 3 25 25 H 1.09005 * 109.46753 * 30.20189 * 1 2 3 26 26 H 1.08994 * 109.47211 * 150.19483 * 1 2 3 27 27 H 1.08003 * 124.66944 * 179.68462 * 4 3 2 28 28 H 1.07993 * 119.99641 * 47.39029 * 7 6 2 29 29 H 1.08000 * 119.99549 * 187.59981 * 8 7 6 30 30 H 1.08991 * 113.46685 * 321.93137 * 12 11 9 31 31 H 1.08994 * 113.46672 * 92.31896 * 12 11 9 32 32 H 0.96696 * 114.00316 * 180.02562 * 14 13 12 33 33 H 0.97003 * 120.00183 * 179.97438 * 18 17 15 34 34 H 1.08999 * 113.46395 * 267.62420 * 23 11 9 35 35 H 1.08997 * 113.46853 * 38.01319 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2218 1.0973 0.0000 4 6 3.5092 0.9713 -0.0070 5 16 3.9535 -0.6790 -0.0063 6 6 2.2550 -1.1486 0.0041 7 6 1.7533 -2.4741 0.0093 8 6 2.2570 -3.3860 0.8768 9 6 3.1658 -2.9792 1.8827 10 8 3.4147 -1.7971 2.0366 11 7 3.7557 -3.9001 2.6704 12 6 4.7176 -3.8824 3.7828 13 6 5.1460 -5.2962 3.3658 14 8 6.1759 -5.3282 2.3756 15 6 5.3959 -6.2319 4.5202 16 1 5.2687 -5.8840 5.5347 17 6 5.7871 -7.5322 4.2815 18 7 6.0047 -8.3490 5.2891 19 14 6.0065 -8.1344 2.5269 20 1 7.4067 -7.8961 2.0933 21 1 5.7087 -9.5878 2.4614 22 1 5.0788 -7.3981 1.6311 23 6 3.7210 -5.3651 2.7954 24 1 -0.3634 0.0036 1.0277 25 1 -0.3633 0.8882 -0.5170 26 1 -0.3633 -0.8917 -0.5108 27 1 4.2071 1.7956 -0.0127 28 1 0.9696 -2.7575 -0.6776 29 1 1.9648 -4.4229 0.8001 30 1 5.5045 -3.1377 3.6642 31 1 4.2453 -3.8439 4.7643 32 1 6.4432 -6.2202 2.1148 33 1 6.2796 -9.2640 5.1211 34 1 2.9836 -5.7221 3.5143 35 1 3.6597 -5.8812 1.8373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491959830.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:21 Heat of formation + Delta-G solvation = 49.754384 kcal Electronic energy + Delta-G solvation = -21134.304883 eV Core-core repulsion = 17841.655727 eV Total energy + Delta-G solvation = -3292.649156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17100 -39.51929 -38.07969 -34.71485 -34.05621 -32.60956 -31.22972 -29.43940 -27.33855 -25.70352 -25.31565 -24.71347 -22.43005 -20.22830 -19.33160 -18.50923 -17.62362 -17.32246 -16.89394 -16.39774 -15.79758 -15.02575 -14.88162 -14.59062 -13.92262 -13.69601 -13.42399 -13.37618 -13.21060 -12.90075 -12.70897 -12.46405 -12.38459 -12.32853 -12.11975 -11.35697 -11.22973 -11.00041 -10.62554 -10.37817 -10.16112 -9.70093 -9.45070 -9.31366 -9.12278 -8.76015 -8.58878 -8.12180 -7.74749 -6.48232 -4.54610 0.27949 1.49842 1.86969 2.09097 2.93540 2.94208 2.96659 3.09880 3.43542 3.68774 3.96794 4.36122 4.57214 4.87273 4.96785 5.02652 5.14087 5.21940 5.44040 5.53400 5.55220 5.64065 5.82157 5.88953 6.04388 6.06387 6.12555 6.22741 6.32462 6.36328 6.53169 6.55919 7.12534 7.90996 7.94691 8.26415 8.44164 8.55242 8.56127 9.08973 10.63900 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.033858 B = 0.003976 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.791375 B = 7040.294737 C = 7159.370037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.081 3.919 3 N -0.481 5.481 4 C -0.025 4.025 5 S 0.259 5.741 6 C -0.222 4.222 7 C 0.004 3.996 8 C -0.194 4.194 9 C 0.555 3.445 10 O -0.550 6.550 11 N -0.627 5.627 12 C 0.121 3.879 13 C 0.196 3.804 14 O -0.550 6.550 15 C -0.534 4.534 16 H 0.093 0.907 17 C 0.080 3.920 18 N -0.875 5.875 19 Si 0.860 3.140 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.258 1.258 23 C 0.059 3.941 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.191 0.809 28 H 0.141 0.859 29 H 0.132 0.868 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.351 0.649 33 H 0.272 0.728 34 H 0.095 0.905 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.781 9.058 -11.858 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 N -0.197 5.197 4 C -0.318 4.318 5 S 0.519 5.481 6 C -0.344 4.344 7 C -0.018 4.018 8 C -0.218 4.218 9 C 0.348 3.652 10 O -0.433 6.433 11 N -0.359 5.359 12 C -0.001 4.001 13 C 0.155 3.845 14 O -0.361 6.361 15 C -0.572 4.572 16 H 0.111 0.889 17 C -0.125 4.125 18 N -0.510 5.510 19 Si 0.688 3.312 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.065 4.065 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.207 0.793 28 H 0.159 0.841 29 H 0.150 0.850 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.204 0.796 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.868 10.349 -11.787 17.123 hybrid contribution -0.737 -1.234 -0.698 1.598 sum -7.605 9.116 -12.485 17.228 Atomic orbital electron populations 1.20292 0.87502 1.02788 1.02753 1.20784 0.97461 0.85672 1.01866 1.65793 1.05103 1.31806 1.16951 1.28359 0.95364 1.01723 1.06306 1.83784 1.05329 1.00332 1.58607 1.23501 0.97187 0.98154 1.15573 1.20442 0.96031 0.89462 0.95888 1.22224 1.01357 1.00747 0.97453 1.16733 0.80670 0.84788 0.83011 1.90896 1.64781 1.16081 1.71548 1.49730 1.43836 1.08820 1.33474 1.23136 0.89763 0.97626 0.89580 1.20266 0.83341 0.94003 0.86919 1.86472 1.57129 1.31701 1.60827 1.21141 1.48103 0.94726 0.93221 0.88921 1.25006 0.93846 0.96607 0.97059 1.69850 1.43908 1.06538 1.30690 0.87314 0.79651 0.78954 0.85233 1.19220 1.20954 1.18321 1.24533 1.02426 0.78712 1.00792 0.90793 0.90854 0.91005 0.79257 0.84131 0.84962 0.90944 0.88790 0.79591 0.91795 0.88670 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.09 36.01 0.36 -0.43 16 2 C 0.08 1.16 6.85 -83.39 -0.57 0.59 16 3 N -0.48 -7.38 10.49 -11.23 -0.12 -7.50 16 4 C -0.03 -0.35 12.20 51.72 0.63 0.29 16 5 S 0.26 3.83 19.57 -107.50 -2.10 1.73 16 6 C -0.22 -3.26 4.62 -38.67 -0.18 -3.44 16 7 C 0.00 0.05 9.19 -39.21 -0.36 -0.31 16 8 C -0.19 -2.84 9.69 -39.28 -0.38 -3.22 16 9 C 0.55 10.28 7.47 -15.00 -0.11 10.17 16 10 O -0.55 -11.13 12.21 5.12 0.06 -11.07 16 11 N -0.63 -12.18 3.69 -188.42 -0.70 -12.87 16 12 C 0.12 2.47 8.03 -8.49 -0.07 2.40 16 13 C 0.20 4.34 1.11 -91.18 -0.10 4.24 16 14 O -0.55 -12.64 13.32 -35.23 -0.47 -13.11 16 15 C -0.53 -13.44 9.27 -34.45 -0.32 -13.76 16 16 H 0.09 2.50 8.06 -52.48 -0.42 2.07 16 17 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.87 -23.96 13.96 55.43 0.77 -23.19 16 19 Si 0.86 18.40 24.42 -169.99 -4.15 14.25 16 20 H -0.27 -5.57 7.06 56.52 0.40 -5.17 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.26 -5.15 5.50 56.52 0.31 -4.84 16 23 C 0.06 1.13 7.08 -8.41 -0.06 1.07 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.60 7.47 -51.93 -0.39 0.22 16 27 H 0.19 1.95 8.06 -52.48 -0.42 1.52 16 28 H 0.14 1.25 7.83 -52.49 -0.41 0.84 16 29 H 0.13 1.65 7.89 -52.49 -0.41 1.24 16 30 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.09 1.80 8.10 -51.93 -0.42 1.38 16 32 H 0.35 7.71 3.16 45.56 0.14 7.85 16 33 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.10 1.73 8.10 -51.93 -0.42 1.31 16 35 H 0.06 1.17 7.15 -51.93 -0.37 0.80 16 LS Contribution 306.93 15.07 4.63 4.63 Total: -1.00 -30.73 306.93 -6.95 -37.68 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -3.62 Total: 9.89 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.25 Total: -0.44 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.04 Total: -43.56 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.41 Total: -24.18 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -4.15 Total: 14.25 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -2.10 Total: 1.73 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.73 -6.95 -37.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491959830.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.433 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds