Wall clock time and date at job start Tue Mar 31 2020 03:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29359 * 124.67106 * 2 1 4 4 C 1.30961 * 117.49019 * 179.72234 * 3 2 1 5 5 C 1.37068 * 113.84597 * 0.52062 * 4 3 2 6 6 C 1.41725 * 126.19321 * 179.78466 * 5 4 3 7 7 C 1.35560 * 120.00385 * 179.71700 * 6 5 4 8 8 C 1.41546 * 119.99979 * 179.97438 * 7 6 5 9 9 O 1.21772 * 119.99962 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00072 * 179.97438 * 8 7 6 11 11 C 1.47583 * 134.49494 * 180.02562 * 10 8 7 12 12 C 1.53945 * 86.11541 * 204.65773 * 11 10 8 13 13 O 1.42903 * 113.74155 * 90.74233 * 12 11 10 14 14 C 1.50704 * 113.74101 * 221.93630 * 12 11 10 15 15 H 1.07996 * 119.99852 * 358.07848 * 14 12 11 16 16 C 1.37883 * 119.99641 * 178.07674 * 14 12 11 17 17 N 1.31510 * 120.00287 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99749 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47315 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47279 * 120.00125 * 18 16 14 21 21 H 1.48497 * 109.47468 * 240.00254 * 18 16 14 22 22 C 1.47935 * 134.50020 * 0.03389 * 10 8 7 23 23 S 1.70908 * 124.67576 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47490 * 269.97924 * 1 2 3 25 25 H 1.09001 * 109.47145 * 29.98202 * 1 2 3 26 26 H 1.09004 * 109.46575 * 149.97742 * 1 2 3 27 27 H 1.08001 * 123.07344 * 180.34487 * 4 3 2 28 28 H 1.08001 * 119.99486 * 359.71991 * 6 5 4 29 29 H 1.07993 * 119.99531 * 0.02562 * 7 6 5 30 30 H 1.08996 * 113.76772 * 90.36065 * 11 10 8 31 31 H 1.08991 * 113.86922 * 318.97468 * 11 10 8 32 32 H 0.96700 * 114.00311 * 181.92380 * 13 12 11 33 33 H 0.96996 * 120.00241 * 179.97438 * 17 16 14 34 34 H 1.08997 * 113.86757 * 41.07474 * 22 10 8 35 35 H 1.09004 * 113.76551 * 269.58365 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0639 0.0000 4 6 3.5422 0.9002 0.0056 5 6 3.9353 -0.4129 -0.0006 6 6 5.2711 -0.8866 -0.0010 7 6 5.5176 -2.2196 -0.0017 8 6 6.8517 -2.6926 -0.0027 9 8 7.7779 -1.9021 -0.0024 10 7 7.0968 -4.0178 -0.0029 11 6 8.3200 -4.8435 -0.0033 12 6 7.4525 -5.9420 -0.6440 13 8 7.4467 -5.9105 -2.0727 14 6 7.7090 -7.3191 -0.0879 15 1 8.4683 -7.4640 0.6662 16 6 6.9740 -8.3937 -0.5419 17 7 6.0497 -8.2172 -1.4606 18 14 7.2914 -10.1004 0.1478 19 1 8.3740 -10.0311 1.1619 20 1 6.0518 -10.6162 0.7823 21 1 7.7002 -11.0107 -0.9519 22 6 6.2478 -5.2293 -0.0029 23 16 2.4793 -1.4055 -0.0006 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3632 -0.8898 -0.5142 27 1 4.2401 1.7244 0.0116 28 1 6.0926 -0.1855 -0.0007 29 1 4.6960 -2.9206 -0.0024 30 1 8.6809 -5.0945 0.9940 31 1 9.1061 -4.4669 -0.6577 32 1 6.8797 -6.5805 -2.4786 33 1 5.5329 -8.9732 -1.7803 34 1 5.3792 -5.1592 -0.6577 35 1 6.0018 -5.5933 0.9946 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493469672.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:48 Heat of formation + Delta-G solvation = -9.529265 kcal Electronic energy + Delta-G solvation = -20277.178084 eV Core-core repulsion = 16981.958196 eV Total energy + Delta-G solvation = -3295.219888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.31929 -40.73184 -39.26779 -35.86727 -35.67327 -34.15014 -32.54213 -30.79490 -29.00459 -27.16511 -27.02333 -25.26433 -23.60280 -21.53193 -20.71670 -19.93731 -19.28102 -18.61823 -18.19500 -17.23271 -16.76683 -16.41270 -16.13670 -15.98445 -15.91626 -15.13592 -14.89658 -14.55108 -14.26219 -14.16166 -13.82253 -13.63133 -13.51674 -13.41962 -13.09869 -12.82350 -12.77460 -12.33841 -12.24555 -12.18515 -11.85340 -11.46541 -11.07457 -10.74175 -10.64236 -10.27459 -10.21465 -9.67954 -9.21282 -8.26200 -6.43182 -1.12906 0.19433 0.58574 0.62489 1.46007 1.51038 1.61036 1.75406 1.99315 2.36038 2.42597 2.96534 3.14140 3.49753 3.78307 3.92444 4.00485 4.12662 4.15426 4.26323 4.46916 4.59202 4.60345 4.65507 4.72275 4.82105 4.88160 4.95585 5.04689 5.17920 5.21659 5.29390 5.73111 5.92981 6.58433 6.62743 6.80893 7.10967 7.30443 7.44059 8.80150 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.003447 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.897596 B = 8119.975428 C = 9069.021644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.050 3.950 3 N -0.503 5.503 4 C 0.090 3.910 5 C -0.253 4.253 6 C 0.041 3.959 7 C -0.224 4.224 8 C 0.558 3.442 9 O -0.605 6.605 10 N -0.632 5.632 11 C 0.111 3.889 12 C 0.219 3.781 13 O -0.586 6.586 14 C -0.556 4.556 15 H 0.072 0.928 16 C 0.034 3.966 17 N -0.915 5.915 18 Si 0.969 3.031 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.282 1.282 22 C 0.092 3.908 23 S 0.171 5.829 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.205 0.795 28 H 0.151 0.849 29 H 0.128 0.872 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.388 0.612 33 H 0.276 0.724 34 H 0.068 0.932 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.870 11.149 3.926 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.223 4.223 3 N -0.218 5.218 4 C -0.067 4.067 5 C -0.374 4.374 6 C 0.018 3.982 7 C -0.247 4.247 8 C 0.354 3.646 9 O -0.492 6.492 10 N -0.363 5.363 11 C -0.011 4.011 12 C 0.178 3.822 13 O -0.398 6.398 14 C -0.594 4.594 15 H 0.090 0.910 16 C -0.167 4.167 17 N -0.556 5.556 18 Si 0.794 3.206 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.208 1.208 22 C -0.030 4.030 23 S 0.429 5.571 24 H 0.124 0.876 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.222 0.778 28 H 0.169 0.831 29 H 0.146 0.854 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.242 0.758 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.750 11.535 3.905 17.631 hybrid contribution 0.631 -0.694 0.024 0.938 sum -12.119 10.841 3.928 16.728 Atomic orbital electron populations 1.20732 0.82347 1.05711 1.05514 1.28053 1.03649 0.90757 0.99866 1.66158 1.05424 1.32114 1.18102 1.23028 0.91366 0.95400 0.96947 1.23884 0.97716 0.97560 1.18196 1.20549 0.93553 0.95181 0.88887 1.21849 0.95575 0.96902 1.10400 1.17056 0.90292 0.80586 0.76698 1.90731 1.48013 1.55136 1.55273 1.50231 1.11937 1.03990 1.70176 1.23448 0.89412 0.87675 1.00605 1.20120 0.90512 0.92081 0.79451 1.86054 1.72163 1.61121 1.20438 1.21745 1.21295 0.92519 1.23826 0.90997 1.25735 0.93535 1.02912 0.94504 1.69466 1.22977 1.33295 1.29818 0.85341 0.78279 0.78767 0.78227 1.19266 1.20128 1.20828 1.24208 0.97237 0.80251 1.01323 1.84185 0.96363 1.11064 1.65448 0.87602 0.88333 0.88057 0.77842 0.83146 0.85379 0.87856 0.92185 0.75833 0.91445 0.91383 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.46 71.24 0.74 -0.09 16 2 C 0.05 0.91 7.37 88.47 0.65 1.56 16 3 N -0.50 -10.97 10.50 -189.29 -1.99 -12.96 16 4 C 0.09 1.90 11.38 84.55 0.96 2.87 16 5 C -0.25 -6.02 6.26 22.86 0.14 -5.88 16 6 C 0.04 1.14 9.39 22.51 0.21 1.35 16 7 C -0.22 -7.49 9.14 22.47 0.21 -7.29 16 8 C 0.56 23.41 7.79 85.06 0.66 24.07 16 9 O -0.61 -28.40 16.84 -4.58 -0.08 -28.48 16 10 N -0.63 -27.30 3.62 -850.03 -3.07 -30.37 16 11 C 0.11 4.93 8.23 86.49 0.71 5.64 16 12 C 0.22 10.53 1.40 -10.88 -0.02 10.51 16 13 O -0.59 -30.54 13.49 -148.98 -2.01 -32.55 16 14 C -0.56 -27.48 8.61 25.60 0.22 -27.26 16 15 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 16 C 0.03 1.64 5.39 84.66 0.46 2.10 16 17 N -0.92 -45.33 11.20 21.45 0.24 -45.09 16 18 Si 0.97 38.80 29.54 68.60 2.03 40.83 16 19 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 22 C 0.09 3.94 7.78 86.42 0.67 4.61 16 23 S 0.17 3.52 21.92 -56.49 -1.24 2.28 16 24 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.20 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.15 4.12 7.46 -2.91 -0.02 4.10 16 29 H 0.13 3.99 6.83 -2.91 -0.02 3.97 16 30 H 0.10 4.15 8.09 -2.39 -0.02 4.13 16 31 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.39 20.28 6.60 -74.06 -0.49 19.79 16 33 H 0.28 12.88 8.31 -92.71 -0.77 12.11 16 34 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.09 3.77 8.09 -2.39 -0.02 3.75 16 Total: -1.00 -62.48 323.57 0.15 -62.33 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.64 Total: 31.81 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 5.63 Total: 12.20 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -4.82 Total: -88.42 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -2.09 Total: -61.03 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.24 Total: 2.28 kcal Total: -62.48 0.15 -62.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493469672.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.800 kcal (2) G-P(sol) polarization free energy of solvation -62.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds