Wall clock time and date at job start Tue Mar 31 2020 03:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00390 * 2 1 4 4 H 1.48498 * 109.47501 * 240.00444 * 3 2 1 5 5 H 1.48510 * 109.46856 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47250 * 119.99918 * 3 2 1 7 7 C 1.38705 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00038 * 179.97438 * 7 2 1 9 9 O 1.34817 * 119.99676 * 359.97438 * 7 2 1 10 10 C 1.35527 * 116.99627 * 185.06799 * 9 7 2 11 11 C 1.38831 * 120.16025 * 354.39561 * 10 9 7 12 12 C 1.38022 * 120.06839 * 180.02562 * 11 10 9 13 13 C 1.38573 * 120.40696 * 359.95623 * 12 11 10 14 14 C 1.37835 * 120.31903 * 0.02562 * 13 12 11 15 15 C 1.39668 * 119.91853 * 0.02562 * 14 13 12 16 16 C 1.47529 * 120.19410 * 179.97438 * 15 14 13 17 17 O 1.21596 * 119.99940 * 180.02562 * 16 15 14 18 18 N 1.34776 * 120.00576 * 0.02562 * 16 15 14 19 19 C 1.46499 * 120.00532 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47058 * 180.02562 * 19 18 16 21 21 O 1.42900 * 109.47411 * 64.99884 * 20 19 18 22 22 C 1.35035 * 117.00170 * 179.97438 * 21 20 19 23 23 N 1.29845 * 120.00078 * 359.97438 * 22 21 20 24 24 O 1.35041 * 120.00328 * 180.02562 * 22 21 20 25 25 H 0.96997 * 120.00153 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.96770 * 0.02562 * 11 10 9 27 27 H 1.08000 * 119.80052 * 179.97438 * 12 11 10 28 28 H 1.07992 * 119.84379 * 180.02562 * 13 12 11 29 29 H 1.07997 * 120.03843 * 179.74542 * 14 13 12 30 30 H 0.97003 * 119.99429 * 359.97438 * 18 16 15 31 31 H 1.08999 * 109.47113 * 299.99628 * 19 18 16 32 32 H 1.08995 * 109.46943 * 60.00151 * 19 18 16 33 33 H 1.09004 * 109.47296 * 185.00153 * 20 19 18 34 34 H 1.09003 * 109.47615 * 304.99833 * 20 19 18 35 35 H 0.96998 * 120.00540 * 180.02562 * 23 22 21 36 36 H 0.96694 * 114.00268 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0087 -1.2012 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3345 -2.3687 -0.0005 10 6 2.0686 -3.5030 0.1056 11 6 3.4554 -3.4402 0.0911 12 6 4.2012 -4.5967 0.1988 13 6 3.5745 -5.8264 0.3228 14 6 2.1986 -5.9076 0.3394 15 6 1.4308 -4.7460 0.2303 16 6 -0.0422 -4.8260 0.2468 17 8 -0.7072 -3.8126 0.1511 18 7 -0.6509 -6.0224 0.3680 19 6 -2.1136 -6.1018 0.3849 20 6 -2.5434 -7.5628 0.5316 21 8 -2.1232 -8.0575 1.8047 22 6 -2.4270 -9.3409 2.0944 23 7 -3.0735 -10.0655 1.2325 24 8 -2.0593 -9.8706 3.2810 25 1 -0.4850 0.8400 0.0004 26 1 3.9513 -2.4856 -0.0045 27 1 5.2798 -4.5428 0.1866 28 1 4.1669 -6.7254 0.4069 29 1 1.7149 -6.8688 0.4322 30 1 -0.1204 -6.8309 0.4440 31 1 -2.4991 -5.5240 1.2250 32 1 -2.5102 -5.6977 -0.5465 33 1 -3.6286 -7.6318 0.4552 34 1 -2.0851 -8.1575 -0.2586 35 1 -3.2921 -10.9874 1.4407 36 1 -2.3209 -10.7942 3.3974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495238993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:14 Heat of formation + Delta-G solvation = -83.859413 kcal Electronic energy + Delta-G solvation = -22815.639796 eV Core-core repulsion = 19074.443840 eV Total energy + Delta-G solvation = -3741.195956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29074 -39.53528 -38.32163 -37.71115 -36.30820 -34.32340 -32.65858 -32.31873 -30.99245 -29.15612 -28.86741 -25.38225 -24.16469 -22.90290 -21.95624 -21.20038 -19.94945 -19.19989 -18.03228 -17.76591 -17.51178 -16.72356 -16.12985 -15.77929 -15.30492 -14.64559 -14.57804 -14.25752 -14.19965 -13.88212 -13.70868 -13.44890 -13.40219 -12.59839 -12.44927 -12.35475 -11.81532 -11.69253 -11.30375 -11.17905 -11.09838 -10.86436 -10.77241 -10.45966 -10.18059 -9.71291 -9.55760 -8.85987 -8.84108 -8.58083 -8.24482 -7.28597 -6.42178 -4.02172 1.74150 1.80607 2.15191 2.34644 3.13289 3.15563 3.17810 3.65951 3.77163 3.95582 4.26369 4.60445 4.66797 4.74687 5.00701 5.09033 5.20407 5.28609 5.47350 5.56300 5.71619 5.76769 5.91489 6.04879 6.11739 6.14529 6.58885 6.71133 6.89555 6.93828 7.05407 7.08584 7.26038 7.31246 7.71906 7.93988 7.95899 8.11793 8.97254 9.10300 9.69853 10.71635 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.020327 B = 0.003606 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.175273 B = 7762.567384 C = 8814.594927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.405 4.405 8 H 0.093 0.907 9 O -0.124 6.124 10 C 0.190 3.810 11 C -0.238 4.238 12 C -0.051 4.051 13 C -0.231 4.231 14 C -0.037 4.037 15 C -0.227 4.227 16 C 0.555 3.445 17 O -0.501 6.501 18 N -0.743 5.743 19 C 0.124 3.876 20 C 0.078 3.922 21 O -0.291 6.291 22 C 0.536 3.464 23 N -0.803 5.803 24 O -0.506 6.506 25 H 0.272 0.728 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.394 0.606 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.352 0.648 36 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 -17.614 2.541 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.480 4.480 8 H 0.111 0.889 9 O -0.022 6.022 10 C 0.130 3.870 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.056 4.056 15 C -0.232 4.232 16 C 0.345 3.655 17 O -0.375 6.375 18 N -0.400 5.400 19 C 0.000 4.000 20 C 0.004 3.996 21 O -0.195 6.195 22 C 0.273 3.727 23 N -0.474 5.474 24 O -0.303 6.303 25 H 0.082 0.918 26 H 0.149 0.851 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.229 0.771 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.170 0.830 36 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -2.354 -15.490 1.975 15.792 hybrid contribution 0.707 -1.048 0.760 1.475 sum -1.647 -16.538 2.734 16.843 Atomic orbital electron populations 1.70114 1.05965 1.27817 1.42527 1.25378 0.95798 0.98931 0.96178 0.85799 0.78784 0.79692 0.79241 1.19384 1.20170 1.19381 1.21452 0.91866 0.81151 1.53560 0.88930 1.84175 1.33508 1.10960 1.73553 1.19268 0.89850 0.87384 0.90477 1.21153 0.93388 0.99321 1.11883 1.20894 0.98626 0.92315 0.95091 1.20460 0.94058 0.97121 1.13373 1.20764 0.93860 0.95528 0.95448 1.18826 0.91881 0.92161 1.20309 1.18226 0.87883 0.82685 0.76721 1.90953 1.65785 1.33793 1.47006 1.45857 1.05947 1.09541 1.78686 1.21382 0.82366 0.92643 1.03633 1.23170 1.01421 0.94086 0.80949 1.85913 1.74431 1.19683 1.39523 1.21453 0.85015 0.85826 0.80430 1.69905 1.28726 1.14385 1.34432 1.84603 1.77525 1.32837 1.35364 0.91819 0.85076 0.87196 0.87299 0.87097 0.77085 0.90423 0.88736 0.89284 0.90067 0.83024 0.72358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.26 5.49 -17.51 -0.10 1.16 16 3 Si 0.94 20.62 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.40 -11.52 9.49 30.90 0.29 -11.23 16 8 H 0.09 2.39 5.21 -52.49 -0.27 2.11 16 9 O -0.12 -3.68 7.84 -21.08 -0.17 -3.85 16 10 C 0.19 4.76 6.66 -38.60 -0.26 4.51 16 11 C -0.24 -5.17 9.16 -39.44 -0.36 -5.53 16 12 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 13 C -0.23 -3.86 10.03 -39.61 -0.40 -4.26 16 14 C -0.04 -0.65 9.54 -39.20 -0.37 -1.03 16 15 C -0.23 -5.00 5.89 -104.81 -0.62 -5.62 16 16 C 0.56 12.30 7.76 -12.47 -0.10 12.20 16 17 O -0.50 -13.72 15.17 -16.57 -0.25 -13.97 16 18 N -0.74 -12.11 5.45 -61.35 -0.33 -12.44 16 19 C 0.12 1.70 6.06 -4.04 -0.02 1.68 16 20 C 0.08 0.83 5.44 37.16 0.20 1.04 16 21 O -0.29 -3.52 10.12 -40.58 -0.41 -3.93 16 22 C 0.54 5.39 9.25 51.92 0.48 5.87 16 23 N -0.80 -7.35 12.93 29.09 0.38 -6.97 16 24 O -0.51 -4.05 13.61 -40.60 -0.55 -4.60 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.11 1.53 6.40 -52.49 -0.34 1.20 16 30 H 0.39 5.40 6.50 -40.82 -0.27 5.13 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.35 2.21 8.58 -40.82 -0.35 1.86 16 36 H 0.42 0.82 8.71 45.56 0.40 1.21 16 LS Contribution 322.42 15.07 4.86 4.86 Total: -1.00 -37.34 322.42 -5.18 -42.52 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -2.79 Total: 9.75 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.64 Total: -2.51 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.80 Total: -43.87 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -1.38 Total: -26.35 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -37.34 -5.18 -42.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495238993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.342 kcal (2) G-P(sol) polarization free energy of solvation -37.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds