Wall clock time and date at job start Tue Mar 31 2020 03:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00390 * 2 1 4 4 H 1.48498 * 109.47501 * 240.00444 * 3 2 1 5 5 H 1.48510 * 109.46856 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47250 * 119.99918 * 3 2 1 7 7 C 1.38705 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00038 * 179.97438 * 7 2 1 9 9 O 1.34817 * 119.99676 * 359.97438 * 7 2 1 10 10 C 1.35527 * 116.99627 * 185.06799 * 9 7 2 11 11 C 1.38831 * 120.16025 * 354.39561 * 10 9 7 12 12 C 1.38022 * 120.06839 * 180.02562 * 11 10 9 13 13 C 1.38573 * 120.40696 * 359.95623 * 12 11 10 14 14 C 1.37835 * 120.31903 * 0.02562 * 13 12 11 15 15 C 1.39668 * 119.91853 * 0.02562 * 14 13 12 16 16 C 1.47529 * 120.19410 * 179.97438 * 15 14 13 17 17 O 1.21596 * 119.99940 * 180.02562 * 16 15 14 18 18 N 1.34776 * 120.00576 * 0.02562 * 16 15 14 19 19 C 1.46499 * 120.00532 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47058 * 180.02562 * 19 18 16 21 21 O 1.42900 * 109.47411 * 64.99884 * 20 19 18 22 22 C 1.35035 * 117.00170 * 179.97438 * 21 20 19 23 23 N 1.29845 * 120.00078 * 359.97438 * 22 21 20 24 24 O 1.35041 * 120.00328 * 180.02562 * 22 21 20 25 25 H 0.96997 * 120.00153 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.96770 * 0.02562 * 11 10 9 27 27 H 1.08000 * 119.80052 * 179.97438 * 12 11 10 28 28 H 1.07992 * 119.84379 * 180.02562 * 13 12 11 29 29 H 1.07997 * 120.03843 * 179.74542 * 14 13 12 30 30 H 0.97003 * 119.99429 * 359.97438 * 18 16 15 31 31 H 1.08999 * 109.47113 * 299.99628 * 19 18 16 32 32 H 1.08995 * 109.46943 * 60.00151 * 19 18 16 33 33 H 1.09004 * 109.47296 * 185.00153 * 20 19 18 34 34 H 1.09003 * 109.47615 * 304.99833 * 20 19 18 35 35 H 0.96998 * 120.00540 * 180.02562 * 23 22 21 36 36 H 0.96694 * 114.00268 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0087 -1.2012 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3345 -2.3687 -0.0005 10 6 2.0686 -3.5030 0.1056 11 6 3.4554 -3.4402 0.0911 12 6 4.2012 -4.5967 0.1988 13 6 3.5745 -5.8264 0.3228 14 6 2.1986 -5.9076 0.3394 15 6 1.4308 -4.7460 0.2303 16 6 -0.0422 -4.8260 0.2468 17 8 -0.7072 -3.8126 0.1511 18 7 -0.6509 -6.0224 0.3680 19 6 -2.1136 -6.1018 0.3849 20 6 -2.5434 -7.5628 0.5316 21 8 -2.1232 -8.0575 1.8047 22 6 -2.4270 -9.3409 2.0944 23 7 -3.0735 -10.0655 1.2325 24 8 -2.0593 -9.8706 3.2810 25 1 -0.4850 0.8400 0.0004 26 1 3.9513 -2.4856 -0.0045 27 1 5.2798 -4.5428 0.1866 28 1 4.1669 -6.7254 0.4069 29 1 1.7149 -6.8688 0.4322 30 1 -0.1204 -6.8309 0.4440 31 1 -2.4991 -5.5240 1.2250 32 1 -2.5102 -5.6977 -0.5465 33 1 -3.6286 -7.6318 0.4552 34 1 -2.0851 -8.1575 -0.2586 35 1 -3.2921 -10.9874 1.4407 36 1 -2.3209 -10.7942 3.3974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495238993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:13 Heat of formation + Delta-G solvation = -118.335814 kcal Electronic energy + Delta-G solvation = -22817.134805 eV Core-core repulsion = 19074.443840 eV Total energy + Delta-G solvation = -3742.690965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34605 -40.95174 -39.80579 -38.71071 -38.01143 -35.79662 -34.30991 -33.38132 -32.49274 -30.57925 -30.37050 -27.36137 -25.36107 -24.20061 -23.19610 -22.59109 -21.54751 -19.95393 -19.83152 -19.22288 -18.50665 -17.89599 -17.60346 -16.89660 -16.46135 -16.29360 -16.07840 -15.90407 -15.66207 -15.31322 -15.28883 -14.67581 -14.48590 -14.24680 -13.98877 -13.80693 -13.53505 -12.97076 -12.81928 -12.68415 -12.49233 -12.33670 -12.13500 -12.02157 -11.42347 -10.86681 -10.80926 -10.62520 -10.41520 -10.13548 -9.77958 -9.02640 -8.42916 -6.13992 0.13246 0.73847 1.11250 1.33534 1.43560 1.46551 1.51371 2.10224 2.17425 2.25505 2.89157 3.23699 3.47799 3.54765 3.84218 3.92220 4.00090 4.07701 4.11576 4.29839 4.42081 4.53474 4.61709 4.71194 4.81763 4.99279 5.08678 5.14962 5.47537 5.49316 5.56485 5.61905 5.70466 5.97481 6.17750 6.41380 6.65733 6.96156 7.38288 7.46789 7.81672 8.77402 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.020327 B = 0.003606 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.175273 B = 7762.567384 C = 8814.594927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.021 4.021 3 Si 1.022 2.978 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.430 4.430 8 H 0.107 0.893 9 O -0.188 6.188 10 C 0.150 3.850 11 C -0.258 4.258 12 C -0.040 4.040 13 C -0.201 4.201 14 C -0.030 4.030 15 C -0.246 4.246 16 C 0.549 3.451 17 O -0.567 6.567 18 N -0.718 5.718 19 C 0.120 3.880 20 C 0.094 3.906 21 O -0.315 6.315 22 C 0.531 3.469 23 N -0.805 5.805 24 O -0.512 6.512 25 H 0.271 0.729 26 H 0.124 0.876 27 H 0.154 0.846 28 H 0.163 0.837 29 H 0.156 0.844 30 H 0.411 0.589 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.366 0.634 36 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -21.363 2.854 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.221 4.221 3 Si 0.840 3.160 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.505 4.505 8 H 0.124 0.876 9 O -0.091 6.091 10 C 0.095 3.905 11 C -0.277 4.277 12 C -0.058 4.058 13 C -0.220 4.220 14 C -0.048 4.048 15 C -0.251 4.251 16 C 0.339 3.661 17 O -0.446 6.446 18 N -0.374 5.374 19 C -0.003 4.003 20 C 0.020 3.980 21 O -0.220 6.220 22 C 0.268 3.732 23 N -0.478 5.478 24 O -0.313 6.313 25 H 0.080 0.920 26 H 0.142 0.858 27 H 0.172 0.828 28 H 0.181 0.819 29 H 0.174 0.826 30 H 0.249 0.751 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.186 0.814 36 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges 0.229 -19.408 2.304 19.545 hybrid contribution 0.050 -0.440 0.726 0.851 sum 0.279 -19.847 3.030 20.079 Atomic orbital electron populations 1.70310 1.08336 1.28652 1.46717 1.26754 0.96747 1.03084 0.95495 0.84627 0.77353 0.73890 0.80113 1.17754 1.19788 1.17907 1.22008 0.92710 0.81837 1.53985 0.87598 1.84177 1.35131 1.12137 1.77615 1.20066 0.91655 0.87528 0.91257 1.21308 0.92326 1.00978 1.13092 1.21432 1.00730 0.91233 0.92370 1.21168 0.93897 0.98479 1.08427 1.21279 0.94518 0.95546 0.93489 1.19292 0.92453 0.92893 1.20442 1.18506 0.88257 0.83303 0.76056 1.90933 1.67056 1.36398 1.50221 1.45623 1.07252 1.08269 1.76238 1.21502 0.80576 0.95202 1.03038 1.22988 1.02273 0.91614 0.81140 1.85825 1.75021 1.21259 1.39915 1.21341 0.85528 0.85175 0.81181 1.69863 1.28074 1.15382 1.34512 1.84576 1.77489 1.34854 1.34427 0.92010 0.85811 0.82798 0.81917 0.82615 0.75149 0.92294 0.88677 0.87720 0.88533 0.81374 0.69650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -59.38 13.67 21.62 0.30 -59.09 16 2 C -0.02 -1.28 5.49 84.85 0.47 -0.81 16 3 Si 1.02 44.42 29.55 68.60 2.03 46.45 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.43 -26.18 9.49 67.93 0.64 -25.54 16 8 H 0.11 5.77 5.21 -2.91 -0.02 5.76 16 9 O -0.19 -12.08 7.84 0.74 0.01 -12.07 16 10 C 0.15 7.83 6.66 22.91 0.15 7.98 16 11 C -0.26 -11.13 9.16 22.36 0.20 -10.92 16 12 C -0.04 -1.25 10.03 22.30 0.22 -1.02 16 13 C -0.20 -5.51 10.03 22.25 0.22 -5.29 16 14 C -0.03 -0.93 9.54 22.52 0.21 -0.72 16 15 C -0.25 -10.88 5.89 -19.99 -0.12 -10.99 16 16 C 0.55 25.17 7.76 86.69 0.67 25.85 16 17 O -0.57 -33.50 15.17 16.88 0.26 -33.24 16 18 N -0.72 -23.01 5.45 -466.29 -2.54 -25.56 16 19 C 0.12 3.33 6.06 86.38 0.52 3.85 16 20 C 0.09 1.84 5.44 71.98 0.39 2.23 16 21 O -0.31 -7.00 10.12 -60.35 -0.61 -7.61 16 22 C 0.53 9.36 9.25 130.54 1.21 10.56 16 23 N -0.81 -12.45 12.93 -290.69 -3.76 -16.21 16 24 O -0.51 -6.88 13.61 -60.42 -0.82 -7.70 16 25 H 0.27 16.30 8.31 -92.71 -0.77 15.53 16 26 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 27 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 28 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 29 H 0.16 3.40 6.40 -2.91 -0.02 3.38 16 30 H 0.41 10.15 6.50 -92.71 -0.60 9.55 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.10 1.77 8.10 -2.39 -0.02 1.75 16 34 H 0.10 1.62 8.10 -2.39 -0.02 1.60 16 35 H 0.37 3.53 8.58 -92.71 -0.80 2.74 16 36 H 0.44 0.47 8.71 -74.06 -0.65 -0.18 16 Total: -1.00 -92.09 322.42 -1.21 -93.30 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -0.87 Total: 26.55 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 4.81 Total: -4.82 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -6.01 Total: -100.86 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -1.17 Total: -60.62 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -92.09 -1.21 -93.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495238993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.037 kcal (2) G-P(sol) polarization free energy of solvation -92.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds