Wall clock time and date at job start Tue Mar 31 2020 03:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48489 * 109.47029 * 269.99874 * 3 2 1 5 5 H 1.48497 * 109.47017 * 29.99991 * 3 2 1 6 6 H 1.48501 * 109.46578 * 149.99921 * 3 2 1 7 7 C 1.37875 * 119.99519 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99793 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00526 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47575 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00209 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46998 * 179.97438 * 11 10 9 13 13 S 1.81395 * 109.46834 * 179.97438 * 12 11 10 14 14 O 1.42107 * 110.54144 * 68.37746 * 13 12 11 15 15 O 1.42090 * 110.54655 * 291.62622 * 13 12 11 16 16 N 1.65602 * 104.44788 * 180.02562 * 13 12 11 17 17 C 1.46387 * 119.64506 * 269.72913 * 16 13 12 18 18 C 1.53230 * 109.48999 * 115.19465 * 17 16 13 19 19 S 1.81737 * 108.80341 * 57.65011 * 18 17 16 20 20 C 1.81748 * 102.30630 * 305.46543 * 19 18 17 21 21 C 1.46376 * 119.64829 * 90.00413 * 16 13 12 22 22 H 0.96999 * 119.99450 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47153 * 59.99446 * 9 7 2 24 24 H 1.08995 * 109.47108 * 300.00061 * 9 7 2 25 25 H 1.00895 * 111.00008 * 56.03825 * 10 9 7 26 26 H 1.09006 * 109.47217 * 59.99829 * 11 10 9 27 27 H 1.08999 * 109.47003 * 299.99798 * 11 10 9 28 28 H 1.08997 * 109.46980 * 59.99764 * 12 11 10 29 29 H 1.08999 * 109.47273 * 299.99871 * 12 11 10 30 30 H 1.09004 * 109.46624 * 235.19775 * 17 16 13 31 31 H 1.08999 * 109.46689 * 355.18119 * 17 16 13 32 32 H 1.09003 * 109.57805 * 297.85770 * 18 17 16 33 33 H 1.08995 * 109.69529 * 177.51732 * 18 17 16 34 34 H 1.08998 * 109.57866 * 294.74177 * 20 19 18 35 35 H 1.09001 * 109.69623 * 174.40302 * 20 19 18 36 36 H 1.09007 * 109.46588 * 4.81316 * 21 16 13 37 37 H 1.09000 * 109.47186 * 124.80644 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2055 -3.6158 0.0018 11 6 1.5051 -4.9071 0.0012 12 6 2.5301 -6.0431 0.0019 13 16 1.6652 -7.6376 0.0019 14 8 0.9969 -7.8424 -1.2354 15 8 0.9959 -7.8419 1.2386 16 7 2.8779 -8.7654 0.0034 17 6 3.4050 -9.2635 -1.2682 18 6 4.8713 -8.8431 -1.4136 19 16 5.8092 -9.4896 0.0024 20 6 4.8736 -8.8368 1.4173 21 6 3.4070 -9.2580 1.2761 22 1 -0.4849 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6240 -2.5567 0.8902 25 1 2.8398 -3.5483 0.7835 26 1 0.8812 -4.9817 -0.8895 27 1 0.8793 -4.9814 0.8905 28 1 3.1543 -5.9687 0.8923 29 1 3.1556 -5.9687 -0.8877 30 1 3.3351 -10.3511 -1.2894 31 1 2.8240 -8.8462 -2.0907 32 1 4.9394 -7.7553 -1.4309 33 1 5.2799 -9.2494 -2.3387 34 1 4.9418 -7.7490 1.4297 35 1 5.2817 -9.2390 2.3446 36 1 2.8275 -8.8370 2.0978 37 1 3.3373 -10.3454 1.3021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566118190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:20 Heat of formation + Delta-G solvation = -69.093738 kcal Electronic energy + Delta-G solvation = -19822.911438 eV Core-core repulsion = 16660.552592 eV Total energy + Delta-G solvation = -3162.358846 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -37.83357 -37.35612 -36.12218 -35.95057 -32.86097 -32.24577 -30.45485 -29.74360 -26.29264 -24.22516 -23.19761 -22.19883 -21.47087 -19.35760 -18.30349 -16.80802 -16.70364 -16.51229 -16.06763 -15.52519 -15.00817 -14.93606 -14.61864 -14.45396 -14.24108 -13.80564 -13.36662 -13.31540 -13.17461 -12.72347 -12.22516 -12.20102 -12.12055 -12.10507 -11.81266 -11.31932 -11.30528 -11.26091 -11.13837 -10.77093 -10.67167 -10.21202 -9.99952 -9.63332 -9.28624 -8.56181 -8.03340 -7.54053 -6.10486 -4.13579 0.03453 1.35696 2.12168 2.32976 3.27930 3.33778 3.36953 3.62516 3.92964 4.09249 4.30382 4.36657 4.54712 4.61909 4.64297 4.75331 4.84580 4.94116 5.08606 5.21762 5.24194 5.26958 5.40092 5.41358 5.51637 5.56492 5.79809 5.94286 6.10491 7.07627 7.27083 7.65726 8.00404 8.19382 8.43313 8.94477 9.51643 11.00655 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.023868 B = 0.003391 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.821028 B = 8255.822164 C = 8858.567166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.189 3.811 10 N -0.679 5.679 11 C 0.069 3.931 12 C -0.618 4.618 13 S 2.604 3.396 14 O -0.950 6.950 15 O -0.952 6.952 16 N -1.003 6.003 17 C 0.114 3.886 18 C -0.106 4.106 19 S -0.254 6.254 20 C -0.106 4.106 21 C 0.114 3.886 22 H 0.263 0.737 23 H 0.032 0.968 24 H -0.009 1.009 25 H 0.332 0.668 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.127 0.873 29 H 0.138 0.862 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.520 -21.288 0.811 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.062 3.938 10 N -0.311 5.311 11 C -0.063 4.063 12 C -0.748 4.748 13 S 2.698 3.302 14 O -0.940 6.940 15 O -0.943 6.943 16 N -0.840 5.840 17 C -0.013 4.013 18 C -0.256 4.256 19 S -0.028 6.028 20 C -0.256 4.256 21 C -0.013 4.013 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.009 0.991 25 H 0.148 0.852 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.145 0.855 29 H 0.156 0.844 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.446 -22.006 0.126 23.948 hybrid contribution -0.198 2.087 0.894 2.279 sum 9.248 -19.919 1.020 21.985 Atomic orbital electron populations 1.69961 1.06116 1.26999 1.50425 1.25002 0.94913 0.99474 0.95155 0.86438 0.79617 0.82793 0.78187 1.20537 1.21211 1.19837 1.21126 0.93517 0.90039 1.50997 0.91862 1.19659 0.90655 0.87175 0.96286 1.60734 1.21080 1.00271 1.48993 1.21543 0.93335 0.90048 1.01399 1.30707 1.13278 1.19117 1.11745 1.05328 0.74391 0.76060 0.74395 1.93591 1.70858 1.84485 1.45059 1.93583 1.70893 1.84544 1.45234 1.57652 1.57500 1.57522 1.11291 1.21554 0.92760 1.01590 0.85359 1.23941 0.97805 1.04587 0.99270 1.86905 1.42234 1.71470 1.02190 1.23936 0.97866 1.04450 0.99371 1.21550 0.92699 1.01689 0.85329 0.92747 0.95008 0.99111 0.85165 0.90169 0.94622 0.85479 0.84411 0.89236 0.87218 0.89114 0.86361 0.89229 0.86404 0.87338 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.49 9.32 -34.44 -0.32 -14.82 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 4.89 5.44 -4.98 -0.03 4.87 16 10 N -0.68 -14.02 6.49 -115.06 -0.75 -14.77 16 11 C 0.07 1.16 5.69 -3.82 -0.02 1.14 16 12 C -0.62 -7.35 6.44 37.16 0.24 -7.11 16 13 S 2.60 31.12 5.40 -107.50 -0.58 30.54 16 14 O -0.95 -14.02 16.48 -57.54 -0.95 -14.97 16 15 O -0.95 -13.95 16.49 -57.54 -0.95 -14.90 16 16 N -1.00 -8.87 3.03 -114.28 -0.35 -9.22 16 17 C 0.11 0.86 6.20 -3.98 -0.02 0.84 16 18 C -0.11 -0.74 6.66 37.28 0.25 -0.49 16 19 S -0.25 -2.10 22.29 -107.50 -2.40 -4.50 16 20 C -0.11 -0.72 6.67 37.28 0.25 -0.47 16 21 C 0.11 0.85 6.20 -3.99 -0.02 0.83 16 22 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 24 H -0.01 -0.24 8.14 -51.93 -0.42 -0.67 16 25 H 0.33 6.35 8.72 -39.29 -0.34 6.01 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.14 1.47 8.14 -51.92 -0.42 1.05 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.11 0.84 6.75 -51.93 -0.35 0.49 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.11 0.81 6.76 -51.92 -0.35 0.46 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -34.50 328.47 -10.74 -45.24 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.66 Total: 0.78 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 0.22 Total: -13.72 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.36 Total: -49.83 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -1.90 Total: -29.86 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 29.02 SS G_CDS: -2.98 Total: 26.04 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.50 -10.74 -45.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566118190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.849 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds