Wall clock time and date at job start Tue Mar 31 2020 04:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46661 * 2 1 4 4 C 1.50698 * 109.47014 * 119.99517 * 2 1 3 5 5 H 1.08001 * 119.99977 * 120.00137 * 4 2 1 6 6 C 1.37874 * 120.00441 * 300.00367 * 4 2 1 7 7 N 1.31509 * 120.00271 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99822 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46674 * 90.00517 * 8 6 4 10 10 H 1.48498 * 109.47320 * 210.00247 * 8 6 4 11 11 H 1.48494 * 109.47078 * 330.00466 * 8 6 4 12 12 N 1.46495 * 109.47214 * 239.99840 * 2 1 3 13 13 C 1.46498 * 120.00076 * 300.00092 * 12 2 1 14 14 S 1.65600 * 120.00160 * 119.99702 * 12 2 1 15 15 O 1.42102 * 106.40002 * 336.46444 * 14 12 2 16 16 O 1.42099 * 106.40574 * 203.53889 * 14 12 2 17 17 N 1.65608 * 107.21755 * 89.99868 * 14 12 2 18 18 C 1.46494 * 119.99583 * 65.00217 * 17 14 12 19 19 H 1.09001 * 110.46552 * 22.39521 * 18 17 14 20 20 C 1.54482 * 110.51426 * 259.64102 * 18 17 14 21 21 O 1.44422 * 104.81003 * 217.37988 * 20 18 17 22 22 C 1.44433 * 105.26990 * 40.50868 * 21 20 18 23 23 C 1.54477 * 104.80629 * 319.48791 * 22 21 20 24 24 H 1.08998 * 110.51089 * 142.61909 * 23 22 21 25 25 O 1.42898 * 110.63132 * 265.27958 * 23 22 21 26 26 H 1.08996 * 109.47113 * 300.00072 * 1 2 3 27 27 H 1.08996 * 109.47006 * 60.00335 * 1 2 3 28 28 H 1.09000 * 109.46783 * 180.02562 * 1 2 3 29 29 H 0.96998 * 120.00107 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.46841 * 270.00100 * 13 12 2 31 31 H 1.08993 * 109.47236 * 29.99605 * 13 12 2 32 32 H 1.09000 * 109.47376 * 150.00166 * 13 12 2 33 33 H 0.96995 * 120.00068 * 244.72754 * 17 14 12 34 34 H 1.09006 * 110.36760 * 336.20998 * 20 18 17 35 35 H 1.08997 * 110.37192 * 98.54195 * 20 18 17 36 36 H 1.09003 * 110.36981 * 200.65608 * 22 21 20 37 37 H 1.09003 * 110.46719 * 78.37215 * 22 21 20 38 38 H 0.96697 * 113.99750 * 294.71438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9771 1.9956 3.9069 11 1 0.8490 2.1773 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.6904 1.4972 -2.1192 16 8 2.8228 -0.5647 -3.5259 17 7 4.5438 -0.1042 -1.8180 18 6 5.1358 -1.4440 -1.8414 19 1 4.5913 -2.0891 -2.5310 20 6 5.1508 -2.0541 -0.4223 21 8 6.3952 -2.7833 -0.3471 22 6 7.3685 -1.9435 -1.0054 23 6 6.6284 -1.3696 -2.2339 24 1 6.9257 -0.3359 -2.4104 25 8 6.8819 -2.1670 -3.3922 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.9034 -0.5277 4.4375 30 1 2.4158 -2.7377 -0.9715 31 1 0.6906 -2.3002 -0.9846 32 1 1.6239 -2.2853 -2.5001 33 1 5.0746 0.6557 -1.5320 34 1 5.1270 -1.2656 0.3300 35 1 4.3061 -2.7304 -0.2911 36 1 8.2277 -2.5349 -1.3221 37 1 7.6866 -1.1379 -0.3435 38 1 7.8042 -2.1567 -3.6827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566492815.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:28 Heat of formation + Delta-G solvation = -152.180624 kcal Electronic energy + Delta-G solvation = -23852.547624 eV Core-core repulsion = 20243.832990 eV Total energy + Delta-G solvation = -3608.714635 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.77266 -36.88910 -36.48355 -36.11557 -35.45659 -34.63788 -32.57545 -30.08008 -29.20057 -28.14516 -25.84497 -25.05791 -23.01256 -21.29310 -20.95353 -19.26635 -17.71442 -17.33202 -17.20371 -16.67215 -16.34871 -15.92589 -15.53531 -15.11027 -14.96305 -14.33015 -13.74823 -13.44306 -13.22243 -12.97602 -12.80600 -12.45520 -12.38943 -12.28800 -12.15033 -12.03608 -11.71167 -11.55766 -11.47003 -11.26398 -11.11734 -10.92704 -10.53133 -10.31448 -10.18429 -9.85531 -9.62980 -9.45431 -9.25461 -8.70755 -8.18204 -6.20796 -4.22590 1.02507 3.17924 3.19879 3.32842 3.34473 3.85030 3.92879 4.11557 4.29166 4.41549 4.66367 4.83260 4.89757 5.10414 5.22585 5.27666 5.35649 5.48998 5.53903 5.68058 5.95233 6.08844 6.14911 6.22476 6.25717 6.36014 6.49446 6.51789 6.74515 6.80932 7.03025 7.26242 7.32560 7.44181 7.57924 8.37455 8.81468 9.39966 10.91047 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.006874 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.129533 B = 4072.077489 C = 4963.513844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.239 3.761 3 H 0.057 0.943 4 C -0.529 4.529 5 H 0.085 0.915 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.295 1.295 11 H -0.262 1.262 12 N -0.983 5.983 13 C 0.094 3.906 14 S 2.785 3.215 15 O -0.980 6.980 16 O -0.989 6.989 17 N -1.116 6.116 18 C 0.129 3.871 19 H 0.115 0.885 20 C 0.033 3.967 21 O -0.366 6.366 22 C 0.016 3.984 23 C 0.066 3.934 24 H 0.078 0.922 25 O -0.552 6.552 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.266 0.734 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.414 0.586 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.020 -0.754 -9.707 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.568 4.568 5 H 0.103 0.897 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.706 3.294 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.825 5.825 13 C -0.052 4.052 14 S 2.793 3.207 15 O -0.964 6.964 16 O -0.972 6.972 17 N -0.874 5.874 18 C 0.020 3.980 19 H 0.133 0.867 20 C -0.045 4.045 21 O -0.284 6.284 22 C -0.062 4.062 23 C 0.005 3.995 24 H 0.096 0.904 25 O -0.357 6.357 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.247 0.753 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 7.011 -0.759 -10.189 12.391 hybrid contribution 0.331 1.228 0.786 1.495 sum 7.342 0.469 -9.403 11.939 Atomic orbital electron populations 1.22428 0.98837 1.01378 0.99248 1.19104 0.91011 0.93353 0.83109 0.92552 1.21219 1.32939 1.14433 0.88189 0.89706 1.24885 0.95507 0.96469 0.95796 1.69867 1.44955 1.40011 0.97989 0.87040 0.80877 0.84010 0.77507 1.20335 1.22229 1.18682 1.57415 1.64494 1.21704 1.38874 1.21398 1.02335 0.81253 1.00215 1.01777 0.72490 0.73080 0.73337 1.93597 1.83553 1.32380 1.86913 1.93567 1.85777 1.76231 1.41661 1.56060 1.32487 1.13877 1.85007 1.21963 0.93696 0.84036 0.98289 0.86692 1.24148 0.87569 0.97593 0.95211 1.89186 1.18726 1.41918 1.78530 1.24111 0.93360 0.95399 0.93338 1.23429 0.95337 0.94677 0.86079 0.90394 1.86590 1.32624 1.71269 1.45248 0.93249 0.94659 0.92160 0.92432 0.93333 0.90282 0.91622 0.75281 0.89594 0.87431 0.88724 0.91304 0.77369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 8.65 37.16 0.32 -2.99 16 2 C 0.24 5.25 2.21 -69.08 -0.15 5.10 16 3 H 0.06 1.32 5.97 -51.93 -0.31 1.01 16 4 C -0.53 -13.15 8.95 -34.44 -0.31 -13.46 16 5 H 0.08 2.21 7.89 -52.49 -0.41 1.79 16 6 C 0.08 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.89 -25.25 13.96 55.43 0.77 -24.48 16 8 Si 0.88 20.67 24.37 -169.99 -4.14 16.53 16 9 H -0.28 -6.36 6.87 56.52 0.39 -5.97 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.26 -6.05 6.53 56.52 0.37 -5.69 16 12 N -0.98 -18.52 3.12 -115.86 -0.36 -18.88 16 13 C 0.09 1.54 9.90 59.85 0.59 2.14 16 14 S 2.78 50.23 6.12 -107.50 -0.66 49.58 16 15 O -0.98 -20.30 16.70 -57.17 -0.95 -21.25 16 16 O -0.99 -19.12 16.12 -57.17 -0.92 -20.05 16 17 N -1.12 -16.43 5.52 -3.56 -0.02 -16.45 16 18 C 0.13 1.84 3.62 -66.36 -0.24 1.60 16 19 H 0.12 1.75 7.43 -51.93 -0.39 1.37 16 20 C 0.03 0.51 7.35 37.94 0.28 0.79 16 21 O -0.37 -5.64 11.65 -35.23 -0.41 -6.05 16 22 C 0.02 0.18 7.38 37.93 0.28 0.46 16 23 C 0.07 0.76 4.25 -25.16 -0.11 0.65 16 24 H 0.08 0.74 7.82 -51.93 -0.41 0.33 16 25 O -0.55 -6.28 13.30 -35.23 -0.47 -6.75 16 26 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.16 6.66 -51.93 -0.35 0.82 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 30 H 0.05 0.76 6.67 -51.93 -0.35 0.41 16 31 H 0.08 1.27 6.43 -51.93 -0.33 0.94 16 32 H 0.07 0.98 7.02 -51.93 -0.36 0.62 16 33 H 0.41 5.16 8.72 -34.48 -0.30 4.86 16 34 H 0.09 1.45 8.06 -51.93 -0.42 1.03 16 35 H 0.11 1.74 6.67 -51.93 -0.35 1.39 16 36 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.38 2.31 9.12 45.56 0.42 2.72 16 LS Contribution 313.55 15.07 4.73 4.73 Total: -1.00 -33.16 313.55 -6.04 -39.20 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.17 Total: 7.65 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 0.57 Total: -3.77 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.39 Total: -59.81 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -2.76 Total: -54.10 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.14 Total: 16.53 kcal Atomic # 16 Polarization: 50.23 SS G_CDS: -0.66 Total: 49.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.16 -6.04 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566492815.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.980 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds