Wall clock time and date at job start Tue Mar 31 2020 04:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46661 * 2 1 4 4 C 1.50698 * 109.47014 * 119.99517 * 2 1 3 5 5 H 1.08001 * 119.99977 * 120.00137 * 4 2 1 6 6 C 1.37874 * 120.00441 * 300.00367 * 4 2 1 7 7 N 1.31509 * 120.00271 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99822 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46674 * 90.00517 * 8 6 4 10 10 H 1.48498 * 109.47320 * 210.00247 * 8 6 4 11 11 H 1.48494 * 109.47078 * 330.00466 * 8 6 4 12 12 N 1.46495 * 109.47214 * 239.99840 * 2 1 3 13 13 C 1.46498 * 120.00076 * 300.00092 * 12 2 1 14 14 S 1.65600 * 120.00160 * 119.99702 * 12 2 1 15 15 O 1.42102 * 106.40002 * 336.46444 * 14 12 2 16 16 O 1.42099 * 106.40574 * 203.53889 * 14 12 2 17 17 N 1.65608 * 107.21755 * 89.99868 * 14 12 2 18 18 C 1.46494 * 119.99583 * 65.00217 * 17 14 12 19 19 H 1.09001 * 110.46552 * 22.39521 * 18 17 14 20 20 C 1.54482 * 110.51426 * 259.64102 * 18 17 14 21 21 O 1.44422 * 104.81003 * 217.37988 * 20 18 17 22 22 C 1.44433 * 105.26990 * 40.50868 * 21 20 18 23 23 C 1.54477 * 104.80629 * 319.48791 * 22 21 20 24 24 H 1.08998 * 110.51089 * 142.61909 * 23 22 21 25 25 O 1.42898 * 110.63132 * 265.27958 * 23 22 21 26 26 H 1.08996 * 109.47113 * 300.00072 * 1 2 3 27 27 H 1.08996 * 109.47006 * 60.00335 * 1 2 3 28 28 H 1.09000 * 109.46783 * 180.02562 * 1 2 3 29 29 H 0.96998 * 120.00107 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.46841 * 270.00100 * 13 12 2 31 31 H 1.08993 * 109.47236 * 29.99605 * 13 12 2 32 32 H 1.09000 * 109.47376 * 150.00166 * 13 12 2 33 33 H 0.96995 * 120.00068 * 244.72754 * 17 14 12 34 34 H 1.09006 * 110.36760 * 336.20998 * 20 18 17 35 35 H 1.08997 * 110.37192 * 98.54195 * 20 18 17 36 36 H 1.09003 * 110.36981 * 200.65608 * 22 21 20 37 37 H 1.09003 * 110.46719 * 78.37215 * 22 21 20 38 38 H 0.96697 * 113.99750 * 294.71438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9771 1.9956 3.9069 11 1 0.8490 2.1773 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.6904 1.4972 -2.1192 16 8 2.8228 -0.5647 -3.5259 17 7 4.5438 -0.1042 -1.8180 18 6 5.1358 -1.4440 -1.8414 19 1 4.5913 -2.0891 -2.5310 20 6 5.1508 -2.0541 -0.4223 21 8 6.3952 -2.7833 -0.3471 22 6 7.3685 -1.9435 -1.0054 23 6 6.6284 -1.3696 -2.2339 24 1 6.9257 -0.3359 -2.4104 25 8 6.8819 -2.1670 -3.3922 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.9034 -0.5277 4.4375 30 1 2.4158 -2.7377 -0.9715 31 1 0.6906 -2.3002 -0.9846 32 1 1.6239 -2.2853 -2.5001 33 1 5.0746 0.6557 -1.5320 34 1 5.1270 -1.2656 0.3300 35 1 4.3061 -2.7304 -0.2911 36 1 8.2277 -2.5349 -1.3221 37 1 7.6866 -1.1379 -0.3435 38 1 7.8042 -2.1567 -3.6827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566492815.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:27 Heat of formation + Delta-G solvation = -183.258632 kcal Electronic energy + Delta-G solvation = -23853.895268 eV Core-core repulsion = 20243.832990 eV Total energy + Delta-G solvation = -3610.062278 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82893 -38.43117 -38.09104 -37.05656 -36.98556 -35.83735 -34.49304 -31.78481 -30.22462 -29.27792 -27.35643 -26.89138 -24.06934 -22.72403 -22.29445 -20.64424 -19.15890 -18.74695 -18.49035 -18.20800 -17.62436 -17.20970 -16.94402 -16.51288 -16.16982 -15.67288 -15.32951 -14.98154 -14.54997 -14.26143 -14.17559 -13.98978 -13.85327 -13.66533 -13.56311 -13.31621 -13.24515 -13.06920 -12.99495 -12.80320 -12.74048 -12.17289 -11.99666 -11.96049 -11.46516 -11.29982 -11.20660 -10.97216 -10.71836 -10.41280 -9.76455 -8.25058 -6.28183 -0.41345 1.32759 1.41690 1.48086 1.80144 2.34151 2.47400 2.94960 3.07952 3.09946 3.39446 3.44372 3.74448 3.87753 3.97701 4.08978 4.25467 4.38962 4.47554 4.59900 4.66423 4.70335 4.73540 4.76561 4.87945 4.93069 4.99053 5.14293 5.19326 5.49188 5.58774 5.67946 5.80133 6.04278 6.38081 6.78750 6.85853 7.37078 8.89583 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.006874 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.129533 B = 4072.077489 C = 4963.513844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.240 3.760 3 H 0.047 0.953 4 C -0.513 4.513 5 H 0.065 0.935 6 C 0.028 3.972 7 N -0.936 5.936 8 Si 0.922 3.078 9 H -0.265 1.265 10 H -0.301 1.301 11 H -0.253 1.253 12 N -0.988 5.988 13 C 0.089 3.911 14 S 2.801 3.199 15 O -1.006 7.006 16 O -1.000 7.000 17 N -1.106 6.106 18 C 0.126 3.874 19 H 0.106 0.894 20 C 0.038 3.962 21 O -0.389 6.389 22 C 0.011 3.989 23 C 0.074 3.926 24 H 0.104 0.896 25 O -0.570 6.570 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.265 0.735 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.425 0.575 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.547 -0.242 -11.143 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.135 3.865 3 H 0.064 0.936 4 C -0.552 4.552 5 H 0.083 0.917 6 C -0.171 4.171 7 N -0.576 5.576 8 Si 0.750 3.250 9 H -0.191 1.191 10 H -0.229 1.229 11 H -0.178 1.178 12 N -0.829 5.829 13 C -0.056 4.056 14 S 2.809 3.191 15 O -0.990 6.990 16 O -0.983 6.983 17 N -0.867 5.867 18 C 0.017 3.983 19 H 0.124 0.876 20 C -0.041 4.041 21 O -0.308 6.308 22 C -0.066 4.066 23 C 0.013 3.987 24 H 0.122 0.878 25 O -0.379 6.379 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.261 0.739 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 7.552 -0.245 -11.660 13.894 hybrid contribution 0.293 0.981 1.154 1.543 sum 7.846 0.737 -10.505 13.132 Atomic orbital electron populations 1.22397 0.97477 1.02361 0.99834 1.18886 0.92090 0.92609 0.82945 0.93557 1.21417 1.31276 1.13289 0.89231 0.91712 1.25515 0.96946 0.98889 0.95747 1.69988 1.47183 1.41941 0.98456 0.86281 0.80061 0.81356 0.77304 1.19138 1.22855 1.17774 1.57352 1.65187 1.22543 1.37769 1.21557 1.02609 0.80083 1.01380 1.01171 0.72790 0.72145 0.72948 1.93559 1.84286 1.33945 1.87206 1.93552 1.86235 1.76315 1.42193 1.55722 1.31508 1.14745 1.84752 1.21976 0.95876 0.83171 0.97255 0.87578 1.23936 0.87705 0.96764 0.95646 1.89155 1.19254 1.43080 1.79302 1.24410 0.93133 0.95884 0.93188 1.23333 0.92881 0.96163 0.86344 0.87808 1.86531 1.35042 1.71327 1.44984 0.94046 0.92609 0.91117 0.92623 0.93028 0.89963 0.89972 0.73858 0.91426 0.88917 0.86105 0.89940 0.74600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.39 8.65 71.98 0.62 -5.76 16 2 C 0.24 10.33 2.21 44.25 0.10 10.43 16 3 H 0.05 2.11 5.97 -2.39 -0.01 2.10 16 4 C -0.51 -25.57 8.95 25.60 0.23 -25.34 16 5 H 0.06 3.44 7.89 -2.91 -0.02 3.42 16 6 C 0.03 1.50 5.45 84.65 0.46 1.96 16 7 N -0.94 -54.00 13.96 21.45 0.30 -53.70 16 8 Si 0.92 42.14 24.37 68.60 1.67 43.81 16 9 H -0.27 -11.56 6.87 99.48 0.68 -10.88 16 10 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.25 -11.13 6.53 99.48 0.65 -10.48 16 12 N -0.99 -36.23 3.12 -520.46 -1.62 -37.86 16 13 C 0.09 2.83 9.90 127.77 1.27 4.10 16 14 S 2.80 97.56 6.12 -56.49 -0.35 97.21 16 15 O -1.01 -40.37 16.70 -128.00 -2.14 -42.51 16 16 O -1.00 -37.06 16.12 -128.00 -2.06 -39.12 16 17 N -1.11 -31.12 5.52 -165.17 -0.91 -32.04 16 18 C 0.13 3.44 3.62 46.01 0.17 3.61 16 19 H 0.11 3.13 7.43 -2.39 -0.02 3.11 16 20 C 0.04 1.19 7.35 72.49 0.53 1.72 16 21 O -0.39 -11.74 11.65 -148.98 -1.74 -13.47 16 22 C 0.01 0.21 7.38 72.48 0.53 0.75 16 23 C 0.07 1.51 4.25 31.61 0.13 1.64 16 24 H 0.10 1.60 7.82 -2.39 -0.02 1.58 16 25 O -0.57 -11.36 13.30 -148.98 -1.98 -13.34 16 26 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 2.60 6.66 -2.39 -0.02 2.59 16 29 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.05 1.60 6.67 -2.38 -0.02 1.58 16 31 H 0.08 2.55 6.43 -2.39 -0.02 2.53 16 32 H 0.08 2.34 7.02 -2.39 -0.02 2.33 16 33 H 0.43 9.93 8.72 -96.75 -0.84 9.08 16 34 H 0.07 2.33 8.06 -2.38 -0.02 2.31 16 35 H 0.09 3.10 6.67 -2.39 -0.02 3.08 16 36 H 0.12 1.77 8.09 -2.39 -0.02 1.75 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.40 3.55 9.12 -74.06 -0.68 2.87 16 Total: -1.00 -70.05 313.55 -5.27 -75.33 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.49 Total: 22.59 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 4.04 Total: -6.89 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -2.24 Total: -123.59 kcal Atomic # 8 Polarization: -100.53 SS G_CDS: -7.92 Total: -108.45 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.67 Total: 43.81 kcal Atomic # 16 Polarization: 97.56 SS G_CDS: -0.35 Total: 97.21 kcal Total: -70.05 -5.27 -75.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566492815.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.933 kcal (2) G-P(sol) polarization free energy of solvation -70.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds