Wall clock time and date at job start Tue Mar 31 2020 04:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09000 * 110.46150 * 27.39313 * 3 2 1 5 5 C 1.54486 * 110.51377 * 264.64320 * 3 2 1 6 6 O 1.44423 * 104.80553 * 217.38133 * 5 3 2 7 7 C 1.44429 * 105.27757 * 40.50672 * 6 5 3 8 8 C 1.54477 * 104.80327 * 319.49224 * 7 6 5 9 9 H 1.09000 * 110.51512 * 142.61853 * 8 7 6 10 10 N 1.46500 * 110.51319 * 265.33521 * 8 7 6 11 11 S 1.65610 * 119.99573 * 259.64591 * 10 8 7 12 12 O 1.42099 * 106.39846 * 178.53633 * 11 10 8 13 13 O 1.42094 * 106.39804 * 311.45021 * 11 10 8 14 14 N 1.65592 * 107.22044 * 64.99560 * 11 10 8 15 15 C 1.46502 * 120.00146 * 269.99900 * 14 11 10 16 16 C 1.46507 * 120.00118 * 89.99768 * 14 11 10 17 17 C 1.50698 * 109.46838 * 95.00039 * 16 14 11 18 18 H 1.08004 * 120.00509 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99928 * 179.97438 * 17 16 14 20 20 N 1.31514 * 119.99925 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99968 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46880 * 90.00281 * 21 19 17 23 23 H 1.48493 * 109.47051 * 210.00045 * 21 19 17 24 24 H 1.48502 * 109.47511 * 330.00258 * 21 19 17 25 25 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09009 * 110.36452 * 336.20916 * 5 3 2 29 29 H 1.08994 * 110.37288 * 98.54133 * 5 3 2 30 30 H 1.08998 * 110.37395 * 200.65880 * 7 6 5 31 31 H 1.08997 * 110.36747 * 78.32293 * 7 6 5 32 32 H 0.96995 * 120.00458 * 79.63788 * 10 8 7 33 33 H 1.08999 * 109.47083 * 89.99591 * 15 14 11 34 34 H 1.08993 * 109.47269 * 210.00302 * 15 14 11 35 35 H 1.09004 * 109.46887 * 330.00472 * 15 14 11 36 36 H 1.09000 * 109.46910 * 214.99607 * 16 14 11 37 37 H 1.08999 * 109.47171 * 335.00238 * 16 14 11 38 38 H 0.96992 * 119.99705 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3368 2.0223 0.4699 5 6 2.3537 1.7451 -1.4406 6 8 3.5963 2.4710 -1.3185 7 6 4.3822 1.7226 -0.3654 8 6 3.3754 1.2904 0.7235 9 1 3.6069 0.2871 1.0812 10 7 3.3783 2.2461 1.8338 11 16 4.2127 1.9000 3.2219 12 8 4.0500 3.0223 4.0782 13 8 3.8431 0.5792 3.5933 14 7 5.8197 1.8425 2.8266 15 6 6.4256 0.5768 2.4056 16 6 6.6355 3.0572 2.8978 17 6 7.3350 3.1151 4.2313 18 1 7.1864 2.3261 4.9538 19 6 8.1648 4.1752 4.5292 20 7 8.3454 5.1361 3.6497 21 14 9.0312 4.2472 6.1825 22 1 10.3476 3.5672 6.0815 23 1 9.2353 5.6653 6.5730 24 1 8.1997 3.5663 7.2073 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.4848 0.8736 -2.0821 29 1 1.5723 2.3941 -1.8358 30 1 5.1590 2.3544 0.0652 31 1 4.8244 0.8478 -0.8421 32 1 2.8918 3.0816 1.7560 33 1 6.3429 0.4767 1.3233 34 1 7.4770 0.5642 2.6924 35 1 5.9074 -0.2522 2.8877 36 1 7.3770 3.0442 2.0989 37 1 5.9952 3.9321 2.7851 38 1 8.9294 5.8817 3.8591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567777804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:51 Heat of formation + Delta-G solvation = -155.279976 kcal Electronic energy + Delta-G solvation = -23216.602131 eV Core-core repulsion = 19607.753098 eV Total energy + Delta-G solvation = -3608.849033 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.05434 -37.31148 -36.64938 -35.53312 -35.20665 -34.61266 -32.43953 -29.90994 -28.37800 -27.76166 -26.68030 -25.07996 -23.02433 -22.31526 -21.43625 -19.16470 -17.62592 -17.31711 -16.83674 -16.57916 -16.27686 -16.07432 -15.50158 -15.12541 -14.92444 -14.60241 -14.38865 -13.96558 -13.51210 -13.29891 -12.63717 -12.61426 -12.34127 -12.17042 -11.95080 -11.80033 -11.64295 -11.52803 -11.33570 -11.21259 -11.16015 -11.07783 -10.71148 -10.52930 -10.23487 -10.12727 -10.00261 -9.76312 -9.21551 -8.44760 -8.10111 -6.06510 -4.10565 1.15348 3.17925 3.31823 3.38344 3.44093 3.52307 3.88271 4.11161 4.23686 4.44960 4.56910 4.68909 4.89270 4.98016 5.04178 5.09702 5.17556 5.27211 5.28918 5.39646 5.43917 5.50854 5.61650 5.77138 5.89153 5.97934 6.27227 6.50107 6.54002 6.88339 7.01278 7.23288 7.39422 7.58658 7.90821 8.19797 8.91832 9.54777 11.02086 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.028106 B = 0.004630 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.986640 B = 6045.834908 C = 6466.763390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.373 6.373 3 C 0.050 3.950 4 H 0.086 0.914 5 C 0.025 3.975 6 O -0.363 6.363 7 C 0.028 3.972 8 C 0.121 3.879 9 H 0.118 0.882 10 N -1.123 6.123 11 S 2.780 3.220 12 O -0.960 6.960 13 O -0.994 6.994 14 N -0.995 5.995 15 C 0.092 3.908 16 C 0.257 3.743 17 C -0.530 4.530 18 H 0.060 0.940 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.414 0.586 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.726 -8.634 -11.157 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.291 6.291 3 C -0.010 4.010 4 H 0.104 0.896 5 C -0.053 4.053 6 O -0.282 6.282 7 C -0.050 4.050 8 C 0.012 3.988 9 H 0.136 0.864 10 N -0.880 5.880 11 S 2.788 3.212 12 O -0.944 6.944 13 O -0.978 6.978 14 N -0.838 5.838 15 C -0.055 4.055 16 C 0.135 3.865 17 C -0.569 4.569 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.247 0.753 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.733 -8.749 -10.403 18.625 hybrid contribution 0.220 0.640 0.541 0.866 sum -12.513 -8.109 -9.862 17.877 Atomic orbital electron populations 1.22865 0.80577 1.03153 1.00179 1.87942 1.20106 1.26234 1.94855 1.23842 0.95270 0.85902 0.95992 0.89565 1.23897 0.87983 0.97341 0.96056 1.89205 1.27456 1.48344 1.63160 1.24097 0.94642 0.97445 0.88817 1.22001 0.94306 0.94263 0.88262 0.86375 1.56382 1.68482 1.29584 1.33569 1.02041 0.72971 0.73265 0.72971 1.93653 1.85772 1.52781 1.62192 1.93537 1.82934 1.39862 1.81434 1.57609 1.26111 1.16764 1.83347 1.21404 1.01138 0.85042 0.97887 1.19073 0.90434 0.79272 0.97713 1.21489 1.27031 1.07338 1.01067 0.92155 1.24930 0.96576 0.95231 0.97266 1.69916 1.37951 1.10676 1.34879 0.86510 0.79676 0.77323 0.84025 1.20617 1.21072 1.19717 0.93903 0.93620 0.89252 0.90929 0.88697 0.87093 0.90795 0.75278 0.94345 0.90165 0.91487 0.94582 0.94377 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.85 101.05 1.10 1.32 16 2 O -0.37 -4.15 10.34 -35.23 -0.36 -4.51 16 3 C 0.05 0.55 3.37 -25.16 -0.08 0.46 16 4 H 0.09 0.85 7.50 -51.93 -0.39 0.46 16 5 C 0.03 0.25 7.38 37.94 0.28 0.53 16 6 O -0.36 -4.69 11.65 -35.23 -0.41 -5.10 16 7 C 0.03 0.35 7.23 37.93 0.27 0.63 16 8 C 0.12 1.55 3.62 -66.36 -0.24 1.31 16 9 H 0.12 1.56 7.43 -51.93 -0.39 1.18 16 10 N -1.12 -16.48 5.52 -3.56 -0.02 -16.49 16 11 S 2.78 53.90 6.08 -107.50 -0.65 53.25 16 12 O -0.96 -22.65 17.11 -57.17 -0.98 -23.63 16 13 O -0.99 -20.38 16.13 -57.17 -0.92 -21.30 16 14 N -1.00 -19.90 3.23 -123.05 -0.40 -20.29 16 15 C 0.09 1.50 10.68 59.85 0.64 2.14 16 16 C 0.26 6.29 5.08 -5.19 -0.03 6.26 16 17 C -0.53 -14.75 9.38 -34.44 -0.32 -15.07 16 18 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.90 -26.00 13.29 55.43 0.74 -25.27 16 21 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 0.34 8.11 -51.93 -0.42 -0.08 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.66 8.09 -51.92 -0.42 0.24 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.11 1.52 8.06 -51.93 -0.42 1.10 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.41 5.38 8.72 -34.48 -0.30 5.08 16 33 H 0.04 0.50 8.02 -51.93 -0.42 0.09 16 34 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 35 H 0.07 1.05 7.02 -51.93 -0.36 0.68 16 36 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 37 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -34.49 332.67 -7.09 -41.58 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.59 Total: 0.72 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 1.52 Total: -0.75 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.32 Total: -62.05 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -2.67 Total: -54.54 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 53.90 SS G_CDS: -0.65 Total: 53.25 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.49 -7.09 -41.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567777804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.701 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds