Wall clock time and date at job start Tue Mar 31 2020 04:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09000 * 110.46150 * 27.39313 * 3 2 1 5 5 C 1.54486 * 110.51377 * 264.64320 * 3 2 1 6 6 O 1.44423 * 104.80553 * 217.38133 * 5 3 2 7 7 C 1.44429 * 105.27757 * 40.50672 * 6 5 3 8 8 C 1.54477 * 104.80327 * 319.49224 * 7 6 5 9 9 H 1.09000 * 110.51512 * 142.61853 * 8 7 6 10 10 N 1.46500 * 110.51319 * 265.33521 * 8 7 6 11 11 S 1.65610 * 119.99573 * 259.64591 * 10 8 7 12 12 O 1.42099 * 106.39846 * 178.53633 * 11 10 8 13 13 O 1.42094 * 106.39804 * 311.45021 * 11 10 8 14 14 N 1.65592 * 107.22044 * 64.99560 * 11 10 8 15 15 C 1.46502 * 120.00146 * 269.99900 * 14 11 10 16 16 C 1.46507 * 120.00118 * 89.99768 * 14 11 10 17 17 C 1.50698 * 109.46838 * 95.00039 * 16 14 11 18 18 H 1.08004 * 120.00509 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99928 * 179.97438 * 17 16 14 20 20 N 1.31514 * 119.99925 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99968 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46880 * 90.00281 * 21 19 17 23 23 H 1.48493 * 109.47051 * 210.00045 * 21 19 17 24 24 H 1.48502 * 109.47511 * 330.00258 * 21 19 17 25 25 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09009 * 110.36452 * 336.20916 * 5 3 2 29 29 H 1.08994 * 110.37288 * 98.54133 * 5 3 2 30 30 H 1.08998 * 110.37395 * 200.65880 * 7 6 5 31 31 H 1.08997 * 110.36747 * 78.32293 * 7 6 5 32 32 H 0.96995 * 120.00458 * 79.63788 * 10 8 7 33 33 H 1.08999 * 109.47083 * 89.99591 * 15 14 11 34 34 H 1.08993 * 109.47269 * 210.00302 * 15 14 11 35 35 H 1.09004 * 109.46887 * 330.00472 * 15 14 11 36 36 H 1.09000 * 109.46910 * 214.99607 * 16 14 11 37 37 H 1.08999 * 109.47171 * 335.00238 * 16 14 11 38 38 H 0.96992 * 119.99705 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3368 2.0223 0.4699 5 6 2.3537 1.7451 -1.4406 6 8 3.5963 2.4710 -1.3185 7 6 4.3822 1.7226 -0.3654 8 6 3.3754 1.2904 0.7235 9 1 3.6069 0.2871 1.0812 10 7 3.3783 2.2461 1.8338 11 16 4.2127 1.9000 3.2219 12 8 4.0500 3.0223 4.0782 13 8 3.8431 0.5792 3.5933 14 7 5.8197 1.8425 2.8266 15 6 6.4256 0.5768 2.4056 16 6 6.6355 3.0572 2.8978 17 6 7.3350 3.1151 4.2313 18 1 7.1864 2.3261 4.9538 19 6 8.1648 4.1752 4.5292 20 7 8.3454 5.1361 3.6497 21 14 9.0312 4.2472 6.1825 22 1 10.3476 3.5672 6.0815 23 1 9.2353 5.6653 6.5730 24 1 8.1997 3.5663 7.2073 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.4848 0.8736 -2.0821 29 1 1.5723 2.3941 -1.8358 30 1 5.1590 2.3544 0.0652 31 1 4.8244 0.8478 -0.8421 32 1 2.8918 3.0816 1.7560 33 1 6.3429 0.4767 1.3233 34 1 7.4770 0.5642 2.6924 35 1 5.9074 -0.2522 2.8877 36 1 7.3770 3.0442 2.0989 37 1 5.9952 3.9321 2.7851 38 1 8.9294 5.8817 3.8591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567777804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:51 Heat of formation + Delta-G solvation = -184.448824 kcal Electronic energy + Delta-G solvation = -23217.866987 eV Core-core repulsion = 19607.753098 eV Total energy + Delta-G solvation = -3610.113889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95131 -38.31933 -38.11219 -37.22672 -36.89427 -35.75920 -34.49590 -30.80360 -29.69719 -29.28242 -27.32826 -26.76839 -24.21883 -23.91419 -22.39296 -20.56486 -19.12013 -18.50835 -18.47019 -18.03200 -17.55893 -17.18429 -16.86822 -16.37396 -16.10682 -15.68515 -15.45453 -15.16124 -14.99312 -14.79658 -14.09394 -13.94567 -13.80705 -13.37525 -13.34149 -13.18544 -13.04621 -12.92491 -12.89279 -12.67080 -12.52800 -12.45473 -12.35992 -12.03992 -11.95881 -11.74746 -11.16008 -10.95009 -10.58422 -10.23365 -9.79512 -8.19603 -6.31184 -0.38605 1.39573 1.41944 1.52331 1.91899 2.40363 2.53614 2.61204 3.05913 3.11790 3.31548 3.45629 3.69719 3.83716 4.03719 4.14207 4.18582 4.28117 4.47547 4.55768 4.68415 4.71131 4.76122 4.78632 4.81451 4.87413 4.89679 5.09342 5.21855 5.46033 5.65233 5.70020 5.82814 6.03391 6.12289 6.14094 6.77262 7.37740 8.87880 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.028106 B = 0.004630 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.986640 B = 6045.834908 C = 6466.763390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.391 6.391 3 C 0.053 3.947 4 H 0.096 0.904 5 C 0.027 3.973 6 O -0.383 6.383 7 C 0.030 3.970 8 C 0.111 3.889 9 H 0.117 0.883 10 N -1.109 6.109 11 S 2.799 3.201 12 O -1.007 7.007 13 O -1.006 7.006 14 N -1.000 6.000 15 C 0.084 3.916 16 C 0.273 3.727 17 C -0.550 4.550 18 H 0.052 0.948 19 C 0.013 3.987 20 N -0.923 5.923 21 Si 0.955 3.045 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.275 1.275 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.423 0.577 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.016 0.984 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.346 -9.547 -12.060 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.310 6.310 3 C -0.007 4.007 4 H 0.114 0.886 5 C -0.050 4.050 6 O -0.302 6.302 7 C -0.049 4.049 8 C 0.003 3.997 9 H 0.134 0.866 10 N -0.870 5.870 11 S 2.807 3.193 12 O -0.991 6.991 13 O -0.989 6.989 14 N -0.842 5.842 15 C -0.061 4.061 16 C 0.149 3.851 17 C -0.589 4.589 18 H 0.070 0.930 19 C -0.187 4.187 20 N -0.563 5.563 21 Si 0.780 3.220 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.200 1.200 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.135 0.865 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.258 0.742 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.034 0.966 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.359 -9.689 -11.315 20.009 hybrid contribution 0.312 0.853 0.741 1.172 sum -13.048 -8.836 -10.574 18.977 Atomic orbital electron populations 1.23092 0.78923 1.04370 1.01181 1.87912 1.21941 1.26173 1.94978 1.23794 0.94262 0.86339 0.96305 0.88641 1.24052 0.87374 0.98029 0.95545 1.89185 1.28666 1.49222 1.63087 1.24072 0.94162 0.97842 0.88804 1.22243 0.96336 0.93448 0.87702 0.86565 1.55901 1.67572 1.30519 1.33040 1.01231 0.72780 0.72153 0.73181 1.93584 1.86399 1.54423 1.64738 1.93516 1.83008 1.40208 1.82148 1.57451 1.26223 1.16684 1.83861 1.21645 1.00612 0.83515 1.00310 1.18615 0.90009 0.80332 0.96104 1.21850 1.27505 1.07268 1.02314 0.92995 1.25721 0.97344 0.94964 1.00634 1.70004 1.38630 1.11177 1.36513 0.85598 0.79021 0.77566 0.79778 1.19043 1.20465 1.19999 0.91909 0.93619 0.88044 0.89874 0.86478 0.88762 0.88591 0.74173 0.90721 0.90824 0.90662 0.94995 0.96554 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.85 113.37 1.23 1.49 16 2 O -0.39 -7.80 10.34 -148.98 -1.54 -9.34 16 3 C 0.05 1.04 3.37 31.61 0.11 1.15 16 4 H 0.10 1.66 7.50 -2.39 -0.02 1.64 16 5 C 0.03 0.47 7.38 72.49 0.53 1.00 16 6 O -0.38 -9.16 11.65 -148.98 -1.74 -10.90 16 7 C 0.03 0.69 7.23 72.48 0.52 1.21 16 8 C 0.11 2.68 3.62 46.01 0.17 2.85 16 9 H 0.12 2.88 7.43 -2.39 -0.02 2.86 16 10 N -1.11 -31.85 5.52 -165.16 -0.91 -32.76 16 11 S 2.80 108.74 6.08 -56.49 -0.34 108.39 16 12 O -1.01 -48.57 17.11 -128.00 -2.19 -50.76 16 13 O -1.01 -40.68 16.13 -128.00 -2.06 -42.74 16 14 N -1.00 -40.04 3.23 -543.22 -1.75 -41.79 16 15 C 0.08 2.68 10.68 127.77 1.36 4.05 16 16 C 0.27 13.61 5.08 85.63 0.43 14.04 16 17 C -0.55 -31.02 9.38 25.60 0.24 -30.78 16 18 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 19 C 0.01 0.73 5.46 84.66 0.46 1.19 16 20 N -0.92 -54.08 13.29 21.45 0.28 -53.79 16 21 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.60 8.11 -2.39 -0.02 0.58 16 27 H 0.10 1.06 8.14 -2.38 -0.02 1.05 16 28 H 0.08 1.27 8.09 -2.38 -0.02 1.25 16 29 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 2.51 8.06 -2.39 -0.02 2.49 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 32 H 0.42 10.78 8.72 -96.75 -0.84 9.93 16 33 H 0.07 1.81 8.02 -2.39 -0.02 1.79 16 34 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 35 H 0.07 2.26 7.02 -2.39 -0.02 2.25 16 36 H 0.03 1.60 8.11 -2.39 -0.02 1.58 16 37 H 0.02 0.89 7.61 -2.39 -0.02 0.87 16 38 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -73.65 332.67 -2.94 -76.59 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.22 Total: 14.18 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 5.06 Total: -3.79 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -2.38 Total: -128.34 kcal Atomic # 8 Polarization: -106.21 SS G_CDS: -7.53 Total: -113.74 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 108.74 SS G_CDS: -0.34 Total: 108.39 kcal Total: -73.65 -2.94 -76.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567777804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.859 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds