Wall clock time and date at job start Tue Mar 31 2020 04:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47295 * 2 1 4 4 C 1.46504 * 120.00042 * 276.49804 * 3 2 1 5 5 C 1.50703 * 109.47058 * 275.00086 * 4 3 2 6 6 H 1.07991 * 119.99970 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99598 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99642 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00109 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47060 * 89.99904 * 9 7 5 11 11 H 1.48500 * 109.46958 * 209.99625 * 9 7 5 12 12 H 1.48497 * 109.47360 * 329.99582 * 9 7 5 13 13 S 1.65599 * 119.99922 * 96.50053 * 3 2 1 14 14 O 1.42100 * 106.40126 * 161.17667 * 13 3 2 15 15 O 1.42096 * 106.40505 * 28.25345 * 13 3 2 16 16 N 1.65607 * 107.21533 * 274.71476 * 13 3 2 17 17 C 1.46503 * 119.99931 * 294.33160 * 16 13 3 18 18 H 1.09002 * 111.02294 * 20.77277 * 17 16 13 19 19 C 1.55203 * 111.30458 * 256.51776 * 17 16 13 20 20 O 1.43645 * 105.26061 * 205.88686 * 19 17 16 21 21 C 1.43236 * 109.97166 * 24.28209 * 20 19 17 22 22 C 1.54377 * 107.58943 * 358.29062 * 21 20 19 23 23 H 1.08996 * 110.85004 * 97.03247 * 22 21 20 24 24 O 1.42905 * 110.84765 * 220.45367 * 22 21 20 25 25 H 1.08998 * 109.47518 * 184.53354 * 1 2 3 26 26 H 1.08998 * 109.47516 * 304.53516 * 1 2 3 27 27 H 1.09005 * 109.47220 * 64.53760 * 1 2 3 28 28 H 1.08997 * 109.47064 * 239.99823 * 2 1 3 29 29 H 1.08997 * 109.46752 * 120.00472 * 2 1 3 30 30 H 1.08999 * 109.46838 * 35.00115 * 4 3 2 31 31 H 1.09000 * 109.47057 * 154.99628 * 4 3 2 32 32 H 0.96993 * 120.00042 * 179.97438 * 8 7 5 33 33 H 0.96992 * 120.00072 * 114.33502 * 16 13 3 34 34 H 1.09006 * 110.37224 * 86.86559 * 19 17 16 35 35 H 1.09003 * 110.21290 * 324.82081 * 19 17 16 36 36 H 1.09007 * 109.82756 * 238.77741 * 21 20 19 37 37 H 1.08994 * 109.90763 * 117.84754 * 21 20 19 38 38 H 0.96693 * 113.99547 * 295.82543 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1272 2.1197 -1.2606 5 6 3.4480 1.8053 -1.9146 6 1 4.1372 1.1233 -1.4390 7 6 3.7760 2.3876 -3.1205 8 7 4.9289 2.1136 -3.6910 9 14 2.5835 3.5666 -3.9434 10 1 2.8593 4.9512 -3.4828 11 1 2.7517 3.4924 -5.4170 12 1 1.1917 3.1936 -3.5847 13 16 2.4474 2.1077 1.4249 14 8 3.2670 3.2159 1.0794 15 8 2.8733 1.0670 2.2937 16 7 1.0670 2.7362 2.0897 17 6 0.3618 3.8296 1.4163 18 1 0.6272 3.8742 0.3601 19 6 0.6293 5.1888 2.1162 20 8 -0.5135 6.0033 1.8096 21 6 -1.6423 5.1718 1.5161 22 6 -1.1749 3.7031 1.6025 23 1 -1.4137 3.2766 2.5767 24 8 -1.7518 2.9232 0.5531 25 1 -0.3634 -1.0244 0.0812 26 1 -0.3634 0.5826 0.8465 27 1 -0.3634 0.4418 -0.9279 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5139 0.8899 30 1 1.3140 1.8266 -1.9247 31 1 2.0658 3.1895 -1.0614 32 1 5.1595 2.5229 -4.5395 33 1 0.7255 2.3806 2.9250 34 1 1.5368 5.6464 1.7221 35 1 0.7149 5.0472 3.1936 36 1 -2.0074 5.3852 0.5114 37 1 -2.4344 5.3511 2.2430 38 1 -2.7148 2.8504 0.6011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576527811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:09 Heat of formation + Delta-G solvation = -161.283671 kcal Electronic energy + Delta-G solvation = -23794.903299 eV Core-core repulsion = 20185.793926 eV Total energy + Delta-G solvation = -3609.109373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.95200 -36.75526 -36.44430 -36.16834 -35.28772 -34.73183 -32.57595 -30.24831 -29.46527 -28.44040 -27.12814 -22.96539 -22.80426 -21.73853 -21.55327 -19.28060 -17.82026 -17.33731 -17.22350 -16.85017 -16.67089 -16.03789 -15.52857 -15.18087 -14.48006 -14.06260 -13.96859 -13.63355 -13.48584 -13.41278 -12.79966 -12.69968 -12.65353 -12.45566 -12.01225 -11.95839 -11.70369 -11.48963 -11.45453 -11.10691 -11.02824 -10.92360 -10.46933 -10.44850 -10.36571 -10.19089 -9.86200 -9.54255 -9.42464 -8.57905 -8.13290 -6.07312 -4.06715 1.05703 3.19952 3.29827 3.35019 3.36849 3.50501 3.92078 4.00926 4.22736 4.39883 4.56480 4.62897 4.81563 4.93986 5.02752 5.17666 5.30358 5.33987 5.42681 5.48689 5.69201 5.72733 5.74601 5.95656 6.02669 6.26031 6.53025 6.59944 6.66226 6.76209 6.94751 7.12223 7.30491 7.42116 7.59648 8.49728 8.97271 9.51920 11.06161 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.007255 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.923355 B = 3858.702189 C = 4441.136397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.118 3.882 3 N -0.981 5.981 4 C 0.229 3.771 5 C -0.533 4.533 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.870 3.130 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.263 1.263 13 S 2.780 3.220 14 O -0.960 6.960 15 O -0.990 6.990 16 N -1.119 6.119 17 C 0.131 3.869 18 H 0.118 0.882 19 C 0.037 3.963 20 O -0.374 6.374 21 C 0.020 3.980 22 C 0.065 3.935 23 H 0.079 0.921 24 O -0.541 6.541 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.410 0.590 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.831 1.841 11.571 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.822 5.822 4 C 0.105 3.895 5 C -0.572 4.572 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.697 3.303 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.188 1.188 13 S 2.787 3.213 14 O -0.943 6.943 15 O -0.974 6.974 16 N -0.876 5.876 17 C 0.022 3.978 18 H 0.136 0.864 19 C -0.041 4.041 20 O -0.292 6.292 21 C -0.058 4.058 22 C 0.004 3.996 23 H 0.097 0.903 24 O -0.346 6.346 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.243 0.757 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -15.123 2.183 11.411 19.070 hybrid contribution -1.690 0.285 -0.191 1.724 sum -16.813 2.468 11.220 20.363 Atomic orbital electron populations 1.22205 0.96698 1.00965 1.02655 1.21179 0.93302 0.82638 1.03743 1.57405 1.80905 1.21562 1.22330 1.19433 0.98356 0.90590 0.81094 1.21377 1.01615 1.28577 1.05592 0.90419 1.24860 0.95102 0.96080 0.96844 1.69896 1.21611 1.43857 1.17951 0.86948 0.82069 0.82303 0.79027 1.19732 1.20981 1.18799 1.02089 0.73054 0.73419 0.72717 1.93641 1.64030 1.53231 1.83356 1.93555 1.79922 1.57434 1.66468 1.56278 1.48010 1.47365 1.35928 1.22312 0.90090 0.86632 0.98769 0.86446 1.23940 0.90223 0.89900 1.00027 1.88465 1.19169 1.31029 1.90557 1.23853 0.89995 0.89887 1.02088 1.23621 0.93704 0.90688 0.91588 0.90335 1.86677 1.25500 1.72683 1.49711 0.92592 0.92741 0.92071 0.89550 0.90580 0.94700 0.95522 0.92530 0.75697 0.87565 0.91127 0.89948 0.90938 0.77353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.23 37.16 0.38 -1.89 16 2 C 0.12 2.00 6.41 -4.05 -0.03 1.97 16 3 N -0.98 -19.58 2.83 -115.67 -0.33 -19.91 16 4 C 0.23 5.35 4.06 -5.19 -0.02 5.32 16 5 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 6 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.89 -27.58 13.96 55.43 0.77 -26.81 16 9 Si 0.87 21.19 27.47 -169.99 -4.67 16.53 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 13 S 2.78 52.87 6.04 -107.50 -0.65 52.22 16 14 O -0.96 -21.95 16.70 -57.17 -0.95 -22.91 16 15 O -0.99 -20.16 16.79 -57.17 -0.96 -21.12 16 16 N -1.12 -15.00 5.69 -2.86 -0.02 -15.01 16 17 C 0.13 1.73 3.41 -65.54 -0.22 1.50 16 18 H 0.12 1.83 6.92 -51.93 -0.36 1.47 16 19 C 0.04 0.47 7.49 38.32 0.29 0.75 16 20 O -0.37 -4.74 11.36 -35.23 -0.40 -5.14 16 21 C 0.02 0.18 7.58 37.88 0.29 0.47 16 22 C 0.07 0.63 4.06 -24.79 -0.10 0.53 16 23 H 0.08 0.58 8.05 -51.93 -0.42 0.17 16 24 O -0.54 -5.28 13.40 -35.23 -0.47 -5.75 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 28 H 0.09 1.54 8.12 -51.93 -0.42 1.12 16 29 H 0.08 1.23 6.96 -51.93 -0.36 0.87 16 30 H 0.04 0.79 7.14 -51.93 -0.37 0.42 16 31 H 0.03 0.63 5.95 -51.93 -0.31 0.32 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.41 4.21 8.82 -34.47 -0.30 3.90 16 34 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.77 8.05 -51.92 -0.42 0.35 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.38 1.86 9.12 45.56 0.42 2.27 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -36.16 327.94 -7.26 -43.42 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.67 Total: 4.32 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 0.14 Total: -4.78 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.43 Total: -61.73 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -2.79 Total: -54.92 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 52.87 SS G_CDS: -0.65 Total: 52.22 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.16 -7.26 -43.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576527811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.865 kcal (2) G-P(sol) polarization free energy of solvation -36.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds