Wall clock time and date at job start Tue Mar 31 2020 03:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86808 * 119.99901 * 2 1 4 4 H 1.48496 * 109.47001 * 269.99985 * 3 2 1 5 5 H 1.48508 * 109.46928 * 29.99538 * 3 2 1 6 6 H 1.48494 * 109.47346 * 149.99588 * 3 2 1 7 7 C 1.38948 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00634 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99630 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00092 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00022 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00323 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47517 * 179.97438 * 12 10 9 14 14 C 1.34776 * 120.00183 * 180.02562 * 13 12 10 15 15 O 1.21730 * 119.99892 * 359.97438 * 14 13 12 16 16 C 1.46428 * 120.00081 * 179.97438 * 14 13 12 17 17 C 1.35869 * 124.99520 * 179.97438 * 16 14 13 18 18 C 1.38727 * 115.20842 * 179.97438 * 17 16 14 19 19 O 1.36641 * 139.74659 * 179.97438 * 18 17 16 20 20 C 1.34072 * 109.74026 * 179.97438 * 19 18 17 21 21 C 1.34222 * 109.48800 * 0.05475 * 20 19 18 22 22 C 1.38035 * 113.38216 * 0.02562 * 18 17 16 23 23 S 1.75649 * 124.99519 * 359.97438 * 16 14 13 24 24 H 0.96997 * 120.00196 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00229 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47119 * 59.99909 * 12 10 9 27 27 H 1.09004 * 109.47148 * 299.99974 * 12 10 9 28 28 H 0.97004 * 119.99563 * 359.97438 * 13 12 10 29 29 H 1.07992 * 122.40092 * 359.96301 * 17 16 14 30 30 H 1.08000 * 125.26019 * 179.97438 * 20 19 18 31 31 H 1.08001 * 126.50771 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4454 2.6528 0.7000 6 1 3.5455 1.4404 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5577 0.0005 11 8 3.2102 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1959 -5.9764 -0.0005 14 6 1.7467 -7.2471 -0.0016 15 8 0.5499 -7.4696 -0.0017 16 6 2.6983 -8.3601 -0.0027 17 6 2.3587 -9.6756 -0.0033 18 6 3.4263 -10.5615 -0.0049 19 8 3.6650 -11.9068 -0.0056 20 6 4.9867 -12.1322 -0.0078 21 6 5.6408 -10.9602 -0.0073 22 6 4.6569 -9.9362 -0.0049 23 16 4.4466 -8.1907 -0.0033 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3906 0.0005 26 1 0.6176 -4.9205 -0.8903 27 1 0.6169 -4.9209 0.8897 28 1 3.1496 -5.7991 -0.0008 29 1 1.3312 -10.0080 -0.0025 30 1 5.4531 -13.1063 -0.0084 31 1 6.7119 -10.8221 -0.0082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588078432.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:43 Heat of formation + Delta-G solvation = -26.945389 kcal Electronic energy + Delta-G solvation = -19561.956699 eV Core-core repulsion = 16130.148497 eV Total energy + Delta-G solvation = -3431.808202 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.051 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.74934 -39.73281 -38.21090 -36.12378 -34.54803 -33.77061 -32.81082 -31.42851 -29.44429 -27.54874 -24.97162 -23.93200 -22.76099 -20.90768 -20.13687 -19.50178 -18.84170 -18.12249 -17.14887 -16.48564 -16.07358 -15.71818 -15.49022 -15.40270 -14.91789 -14.53639 -14.17795 -13.99638 -13.55279 -13.43936 -13.09627 -12.46222 -12.32378 -12.28062 -11.94283 -11.66053 -11.20256 -11.14675 -10.51299 -10.47816 -10.35157 -10.12757 -9.66869 -9.03019 -8.68801 -8.64781 -8.30517 -8.13667 -6.54347 -3.96505 0.09843 1.00371 1.61135 1.84461 2.09650 2.33546 3.09500 3.14460 3.18593 3.22079 3.28544 3.69555 4.08591 4.29923 4.44688 4.80070 4.83031 4.87595 5.14027 5.23512 5.35895 5.57124 5.66649 5.84733 5.88134 5.90204 6.00175 6.47484 6.57420 7.43529 7.57188 7.88033 8.18374 8.41365 9.01365 9.35201 9.82746 10.62424 Molecular weight = 294.05amu Principal moments of inertia in cm(-1) A = 0.042963 B = 0.002801 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.566492 B = 9995.729575 C =10632.151283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.597 6.597 12 C 0.109 3.891 13 N -0.699 5.699 14 C 0.589 3.411 15 O -0.531 6.531 16 C -0.224 4.224 17 C -0.028 4.028 18 C 0.002 3.998 19 O -0.165 6.165 20 C 0.013 3.987 21 C -0.178 4.178 22 C -0.226 4.226 23 S 0.219 5.781 24 H 0.275 0.725 25 H 0.396 0.604 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.409 0.591 29 H 0.162 0.838 30 H 0.215 0.785 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.715 -20.403 -0.007 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.484 6.484 12 C -0.018 4.018 13 N -0.353 5.353 14 C 0.374 3.626 15 O -0.410 6.410 16 C -0.344 4.344 17 C -0.062 4.062 18 C -0.054 4.054 19 O -0.064 6.064 20 C -0.057 4.057 21 C -0.200 4.200 22 C -0.344 4.344 23 S 0.485 5.515 24 H 0.085 0.915 25 H 0.230 0.770 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.248 0.752 29 H 0.179 0.821 30 H 0.231 0.769 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.261 -19.229 0.001 20.929 hybrid contribution -0.474 -0.291 -0.012 0.556 sum 7.786 -19.520 -0.011 21.016 Atomic orbital electron populations 1.69608 1.06031 1.28607 1.49121 1.25334 0.95671 0.99974 0.96694 0.85806 0.79242 0.80428 0.78521 1.20232 1.20774 1.19279 1.19736 0.93494 0.81931 1.48332 0.87606 1.41784 1.09515 1.04431 1.62392 1.19673 0.88292 0.84929 0.85927 1.90503 1.13650 1.86740 1.57457 1.21041 0.91628 0.85387 1.03769 1.45538 1.11714 1.04370 1.73636 1.16658 0.87062 0.81579 0.77310 1.90846 1.15002 1.84497 1.50658 1.23956 0.97867 0.96708 1.15845 1.18985 0.98942 0.88403 0.99880 1.19250 0.93982 0.81722 1.10475 1.84344 1.25673 1.22107 1.74283 1.24119 0.79530 1.00284 1.01757 1.20984 0.99843 0.89480 1.09726 1.24221 0.97789 0.99824 1.12561 1.84208 0.98125 0.96489 1.72692 0.91529 0.76971 0.89294 0.89285 0.75209 0.82066 0.76867 0.82312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.62 13.05 55.50 0.72 -22.89 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.33 29.55 -169.99 -5.02 15.31 16 4 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.31 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.36 5.29 -10.97 -0.06 -13.42 16 10 C 0.43 9.65 7.85 -10.99 -0.09 9.56 16 11 O -0.60 -15.11 15.24 5.55 0.08 -15.02 16 12 C 0.11 1.98 6.15 -5.19 -0.03 1.95 16 13 N -0.70 -11.92 5.52 -62.87 -0.35 -12.27 16 14 C 0.59 9.69 7.77 -12.96 -0.10 9.59 16 15 O -0.53 -9.94 16.78 5.16 0.09 -9.86 16 16 C -0.22 -3.12 6.39 -37.14 -0.24 -3.36 16 17 C -0.03 -0.36 9.88 -40.25 -0.40 -0.75 16 18 C 0.00 0.02 7.79 -39.47 -0.31 -0.29 16 19 O -0.16 -1.75 10.72 -0.73 -0.01 -1.75 16 20 C 0.01 0.09 12.00 29.32 0.35 0.45 16 21 C -0.18 -1.52 10.91 -39.56 -0.43 -1.95 16 22 C -0.23 -2.60 7.35 -38.21 -0.28 -2.88 16 23 S 0.22 2.65 22.30 -107.50 -2.40 0.26 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.40 9.28 7.90 -40.82 -0.32 8.96 16 26 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.41 6.94 6.50 -40.82 -0.27 6.67 16 29 H 0.16 1.91 8.01 -52.49 -0.42 1.49 16 30 H 0.21 0.49 8.06 -52.49 -0.42 0.07 16 31 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 301.32 15.07 4.54 4.54 Total: -1.00 -31.78 301.32 -6.37 -38.15 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -2.21 Total: 12.40 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.76 Total: 4.56 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.32 Total: -48.58 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: 0.16 Total: -26.63 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.40 Total: 0.26 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.78 -6.37 -38.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588078432.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.205 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds