Wall clock time and date at job start Tue Mar 31 2020 03:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86808 * 119.99901 * 2 1 4 4 H 1.48496 * 109.47001 * 269.99985 * 3 2 1 5 5 H 1.48508 * 109.46928 * 29.99538 * 3 2 1 6 6 H 1.48494 * 109.47346 * 149.99588 * 3 2 1 7 7 C 1.38948 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00634 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99630 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00092 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00022 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00323 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47517 * 179.97438 * 12 10 9 14 14 C 1.34776 * 120.00183 * 180.02562 * 13 12 10 15 15 O 1.21730 * 119.99892 * 359.97438 * 14 13 12 16 16 C 1.46428 * 120.00081 * 179.97438 * 14 13 12 17 17 C 1.35869 * 124.99520 * 179.97438 * 16 14 13 18 18 C 1.38727 * 115.20842 * 179.97438 * 17 16 14 19 19 O 1.36641 * 139.74659 * 179.97438 * 18 17 16 20 20 C 1.34072 * 109.74026 * 179.97438 * 19 18 17 21 21 C 1.34222 * 109.48800 * 0.05475 * 20 19 18 22 22 C 1.38035 * 113.38216 * 0.02562 * 18 17 16 23 23 S 1.75649 * 124.99519 * 359.97438 * 16 14 13 24 24 H 0.96997 * 120.00196 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00229 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47119 * 59.99909 * 12 10 9 27 27 H 1.09004 * 109.47148 * 299.99974 * 12 10 9 28 28 H 0.97004 * 119.99563 * 359.97438 * 13 12 10 29 29 H 1.07992 * 122.40092 * 359.96301 * 17 16 14 30 30 H 1.08000 * 125.26019 * 179.97438 * 20 19 18 31 31 H 1.08001 * 126.50771 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4454 2.6528 0.7000 6 1 3.5455 1.4404 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5577 0.0005 11 8 3.2102 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1959 -5.9764 -0.0005 14 6 1.7467 -7.2471 -0.0016 15 8 0.5499 -7.4696 -0.0017 16 6 2.6983 -8.3601 -0.0027 17 6 2.3587 -9.6756 -0.0033 18 6 3.4263 -10.5615 -0.0049 19 8 3.6650 -11.9068 -0.0056 20 6 4.9867 -12.1322 -0.0078 21 6 5.6408 -10.9602 -0.0073 22 6 4.6569 -9.9362 -0.0049 23 16 4.4466 -8.1907 -0.0033 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3906 0.0005 26 1 0.6176 -4.9205 -0.8903 27 1 0.6169 -4.9209 0.8897 28 1 3.1496 -5.7991 -0.0008 29 1 1.3312 -10.0080 -0.0025 30 1 5.4531 -13.1063 -0.0084 31 1 6.7119 -10.8221 -0.0082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588078432.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:41 Heat of formation + Delta-G solvation = -50.294180 kcal Electronic energy + Delta-G solvation = -19562.969179 eV Core-core repulsion = 16130.148497 eV Total energy + Delta-G solvation = -3432.820682 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.051 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.52503 -41.14150 -39.96951 -37.10019 -36.28382 -35.42952 -33.57842 -33.38976 -30.60223 -28.87148 -26.65109 -25.10562 -23.66453 -21.85221 -21.53450 -21.00259 -20.06844 -19.75335 -18.34445 -17.44235 -17.30263 -17.20260 -16.83049 -16.54142 -16.39115 -15.85796 -15.82023 -15.58996 -15.04465 -14.30680 -14.03274 -13.79802 -13.75968 -13.55272 -13.23068 -13.20832 -12.91097 -12.46261 -12.16123 -12.12436 -11.58137 -11.46833 -11.31070 -10.59765 -10.41228 -10.10751 -9.56456 -9.15538 -8.51798 -6.02045 -0.85114 0.08421 0.67240 0.98815 1.33272 1.36087 1.42546 1.48440 1.56402 1.86500 1.94958 1.99186 2.30419 3.06264 3.15418 3.52792 3.57180 3.86526 4.12121 4.17789 4.37326 4.38256 4.46554 4.64949 4.71040 4.81466 5.04571 5.29412 5.37958 5.82632 5.90224 6.23326 6.46630 6.85891 7.02501 7.41995 7.92313 8.65021 Molecular weight = 294.05amu Principal moments of inertia in cm(-1) A = 0.042963 B = 0.002801 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.566492 B = 9995.729575 C =10632.151283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.556 5.556 10 C 0.431 3.569 11 O -0.624 6.624 12 C 0.120 3.880 13 N -0.703 5.703 14 C 0.595 3.405 15 O -0.560 6.560 16 C -0.258 4.258 17 C -0.013 4.013 18 C -0.030 4.030 19 O -0.174 6.174 20 C 0.044 3.956 21 C -0.197 4.197 22 C -0.221 4.221 23 S 0.221 5.779 24 H 0.280 0.720 25 H 0.400 0.600 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.410 0.590 29 H 0.164 0.836 30 H 0.268 0.732 31 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.013 -22.041 -0.022 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.192 5.192 10 C 0.218 3.782 11 O -0.512 6.512 12 C -0.007 4.007 13 N -0.356 5.356 14 C 0.382 3.618 15 O -0.441 6.441 16 C -0.377 4.377 17 C -0.048 4.048 18 C -0.085 4.085 19 O -0.073 6.073 20 C -0.026 4.026 21 C -0.220 4.220 22 C -0.340 4.340 23 S 0.487 5.513 24 H 0.090 0.910 25 H 0.234 0.766 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.248 0.752 29 H 0.182 0.818 30 H 0.283 0.717 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 9.542 -20.872 -0.015 22.950 hybrid contribution -0.768 -0.021 -0.008 0.768 sum 8.774 -20.893 -0.023 22.661 Atomic orbital electron populations 1.69672 1.07005 1.29693 1.49137 1.26129 0.96534 1.02683 0.95717 0.84870 0.77936 0.76473 0.78730 1.19540 1.19650 1.19423 1.19741 0.93001 0.83472 1.50432 0.89512 1.41822 1.09645 1.04523 1.63190 1.20342 0.88111 0.85871 0.83856 1.90479 1.15156 1.87471 1.58120 1.20905 0.91373 0.83325 1.05101 1.45528 1.11461 1.04426 1.74147 1.16875 0.87117 0.81651 0.76146 1.90817 1.16258 1.84869 1.52118 1.23589 0.98443 0.96176 1.19512 1.19075 0.99528 0.88342 0.97886 1.19194 0.93899 0.82620 1.12808 1.84368 1.27636 1.21089 1.74234 1.25237 0.77960 1.02027 0.97337 1.21454 1.00952 0.88839 1.10728 1.24627 0.98792 0.99624 1.10949 1.84110 0.96811 0.97452 1.72943 0.91021 0.76575 0.87909 0.87899 0.75165 0.81813 0.71663 0.79665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.32 13.05 21.66 0.28 -48.04 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 41.50 29.55 68.60 2.03 43.53 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.34 -18.46 9.68 84.04 0.81 -17.65 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -27.74 5.29 -307.00 -1.62 -29.36 16 10 C 0.43 19.85 7.85 87.66 0.69 20.54 16 11 O -0.62 -32.27 15.24 -3.06 -0.05 -32.31 16 12 C 0.12 4.39 6.15 85.63 0.53 4.92 16 13 N -0.70 -24.28 5.52 -471.04 -2.60 -26.88 16 14 C 0.59 19.89 7.77 86.38 0.67 20.57 16 15 O -0.56 -21.24 16.78 -4.44 -0.07 -21.31 16 16 C -0.26 -7.27 6.39 23.85 0.15 -7.12 16 17 C -0.01 -0.34 9.88 21.84 0.22 -0.13 16 18 C -0.03 -0.70 7.79 22.34 0.17 -0.53 16 19 O -0.17 -3.23 10.72 -25.53 -0.27 -3.51 16 20 C 0.04 0.45 12.00 66.90 0.80 1.25 16 21 C -0.20 -2.72 10.91 22.29 0.24 -2.47 16 22 C -0.22 -4.76 7.35 23.16 0.17 -4.59 16 23 S 0.22 5.30 22.30 -56.49 -1.26 4.04 16 24 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 25 H 0.40 19.06 7.90 -92.70 -0.73 18.32 16 26 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 27 H 0.10 3.51 8.14 -2.38 -0.02 3.49 16 28 H 0.41 14.19 6.50 -92.70 -0.60 13.59 16 29 H 0.16 3.93 8.01 -2.91 -0.02 3.91 16 30 H 0.27 -0.41 8.06 -2.91 -0.02 -0.43 16 31 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -69.23 301.32 1.24 -67.99 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.11 Total: 31.08 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 4.93 Total: 14.76 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -3.94 Total: -104.27 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -0.39 Total: -57.13 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.26 Total: 4.04 kcal Total: -69.23 1.24 -67.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588078432.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.696 kcal (2) G-P(sol) polarization free energy of solvation -69.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds