Wall clock time and date at job start Tue Mar 31 2020 02:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47477 * 2 1 4 4 N 1.46502 * 109.46860 * 119.99788 * 2 1 3 5 5 C 1.35312 * 125.86991 * 275.28804 * 4 2 1 6 6 C 1.35358 * 106.17645 * 180.18772 * 5 4 2 7 7 C 1.50692 * 126.75095 * 179.85826 * 6 5 4 8 8 N 1.46899 * 109.47691 * 94.71300 * 7 6 5 9 9 C 1.46894 * 111.00097 * 179.97438 * 8 7 6 10 10 C 1.53038 * 109.46101 * 275.06619 * 9 8 7 11 11 C 1.53195 * 109.31352 * 178.61797 * 10 9 8 12 12 N 1.46925 * 108.77449 * 54.63743 * 11 10 9 13 13 C 1.36939 * 120.63227 * 126.41611 * 12 11 10 14 14 H 1.08001 * 119.99747 * 331.82157 * 13 12 11 15 15 C 1.38811 * 120.00356 * 151.82431 * 13 12 11 16 16 N 1.31618 * 119.99696 * 343.07030 * 15 13 12 17 17 Si 1.86793 * 120.00115 * 163.07180 * 15 13 12 18 18 H 1.48508 * 109.46971 * 90.00191 * 17 15 13 19 19 H 1.48503 * 109.47224 * 209.99965 * 17 15 13 20 20 H 1.48495 * 109.47494 * 330.00298 * 17 15 13 21 21 C 1.46924 * 118.73961 * 306.39011 * 12 11 10 22 22 C 1.53048 * 109.45731 * 155.00169 * 9 8 7 23 23 N 1.33772 * 106.49247 * 359.59817 * 6 5 4 24 24 N 1.28631 * 108.88716 * 0.25521 * 23 6 5 25 25 H 1.09003 * 109.46847 * 300.00307 * 1 2 3 26 26 H 1.09005 * 109.47135 * 60.00068 * 1 2 3 27 27 H 1.09001 * 109.47679 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46852 * 239.99240 * 2 1 3 29 29 H 1.09005 * 109.46882 * 300.00087 * 3 2 1 30 30 H 1.09003 * 109.47333 * 59.99990 * 3 2 1 31 31 H 1.09003 * 109.47559 * 179.97438 * 3 2 1 32 32 H 1.08002 * 126.91431 * 0.04730 * 5 4 2 33 33 H 1.09000 * 109.47513 * 334.71001 * 7 6 5 34 34 H 1.09008 * 109.46952 * 214.71227 * 7 6 5 35 35 H 1.00897 * 110.99640 * 56.03873 * 8 7 6 36 36 H 1.08996 * 109.46656 * 35.03306 * 9 8 7 37 37 H 1.09001 * 109.49936 * 298.56800 * 10 9 8 38 38 H 1.08999 * 109.49975 * 58.66604 * 10 9 8 39 39 H 1.08996 * 109.58754 * 294.84666 * 11 10 9 40 40 H 1.09000 * 109.70308 * 174.49222 * 11 10 9 41 41 H 0.97000 * 120.00177 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.58962 * 293.82461 * 21 12 11 43 43 H 1.09000 * 109.70326 * 173.46613 * 21 12 11 44 44 H 1.08998 * 109.49421 * 301.33752 * 22 9 8 45 45 H 1.08997 * 109.49911 * 61.43099 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1872 -0.1356 2.4187 6 6 2.6556 -1.1216 3.2190 7 6 3.0062 -1.0069 4.6801 8 7 1.8553 -1.4205 5.4939 9 6 2.1615 -1.3220 6.9272 10 6 2.8650 -2.6008 7.3873 11 6 3.2135 -2.4804 8.8742 12 7 1.9898 -2.1624 9.6225 13 6 1.6044 -2.9304 10.6888 14 1 1.8800 -3.9738 10.7302 15 6 0.8595 -2.3679 11.7162 16 7 0.8029 -1.0596 11.8479 17 14 -0.0624 -3.4678 12.9118 18 1 0.8172 -3.7946 14.0628 19 1 -1.2745 -2.7621 13.3998 20 1 -0.4629 -4.7212 12.2234 21 6 1.1876 -1.0042 9.2055 22 6 0.8618 -1.1412 7.7149 23 7 2.7405 -2.2193 2.4592 24 7 2.3557 -1.9307 1.2662 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5139 -0.8899 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.9904 0.8887 2.6989 33 1 3.2625 0.0268 4.9122 34 1 3.8576 -1.6508 4.9011 35 1 1.5576 -2.3535 5.2512 36 1 2.8136 -0.4662 7.1014 37 1 2.2038 -3.4542 7.2366 38 1 3.7786 -2.7414 6.8098 39 1 3.9450 -1.6847 9.0148 40 1 3.6262 -3.4235 9.2325 41 1 0.2821 -0.6664 12.5656 42 1 1.7538 -0.0881 9.3730 43 1 0.2621 -0.9721 9.7804 44 1 0.3496 -0.2428 7.3703 45 1 0.2195 -2.0083 7.5611 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588925312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:53 Heat of formation + Delta-G solvation = 113.307456 kcal Electronic energy + Delta-G solvation = -23445.025283 eV Core-core repulsion = 20114.056726 eV Total energy + Delta-G solvation = -3330.968557 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.36558 -38.10732 -36.86593 -35.20798 -32.72721 -31.53960 -31.11069 -29.94319 -29.00707 -27.94777 -25.87905 -24.18813 -23.96921 -22.06406 -21.42711 -21.28326 -20.72709 -19.18784 -17.48898 -16.74430 -16.50947 -15.31100 -15.13511 -15.02196 -14.72067 -14.51013 -13.84121 -13.74768 -13.61253 -13.41116 -13.06553 -12.91638 -12.86642 -12.63624 -12.35018 -12.11508 -11.97758 -11.80709 -11.55957 -11.32200 -11.00856 -10.87036 -10.71713 -10.65248 -10.23283 -10.17466 -10.14651 -9.93269 -9.66919 -9.49144 -9.20662 -8.43536 -8.00712 -6.60810 -5.73767 -3.15559 1.50501 2.11928 2.46328 3.40956 3.47807 3.50947 3.88179 4.19257 4.26810 4.39295 4.54520 4.60909 4.83619 4.88221 4.89109 5.05289 5.07766 5.13374 5.34370 5.37101 5.46403 5.48893 5.54459 5.57788 5.66134 5.73135 5.90839 5.98093 6.09861 6.17282 6.39323 6.47454 6.56951 6.65416 6.68765 6.77979 6.91078 7.01839 7.38181 7.44098 7.68163 7.74834 7.85168 8.45691 8.51239 9.27393 9.90966 10.47931 11.34892 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.034201 B = 0.002655 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.484905 B =10543.099103 C =10761.752642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 C -0.166 4.166 4 N -0.290 5.290 5 C -0.032 4.032 6 C -0.012 4.012 7 C 0.144 3.856 8 N -0.683 5.683 9 C 0.096 3.904 10 C -0.161 4.161 11 C 0.150 3.850 12 N -0.593 5.593 13 C -0.250 4.250 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.171 3.829 22 C -0.124 4.124 23 N -0.266 5.266 24 N -0.092 5.092 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.187 0.813 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.342 0.658 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.052 0.948 41 H 0.253 0.747 42 H 0.016 0.984 43 H 0.087 0.913 44 H 0.053 0.947 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 7.108 -24.212 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.037 3.963 3 C -0.224 4.224 4 N -0.084 5.084 5 C -0.183 4.183 6 C -0.150 4.150 7 C 0.013 3.987 8 N -0.314 5.314 9 C -0.013 4.013 10 C -0.201 4.201 11 C 0.023 3.977 12 N -0.316 5.316 13 C -0.380 4.380 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.548 5.548 17 Si 0.731 3.269 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.045 3.955 22 C -0.164 4.164 23 N -0.133 5.133 24 N -0.070 5.070 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.204 0.796 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.160 0.840 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.289 6.499 -24.915 25.781 hybrid contribution -0.077 -0.179 1.172 1.188 sum 1.212 6.320 -23.744 24.600 Atomic orbital electron populations 1.22233 0.92355 1.03935 1.03875 1.21673 0.95963 0.93666 0.85046 1.22216 1.02516 0.93312 1.04326 1.47563 1.42617 1.08391 1.09878 1.23263 1.07624 1.02305 0.85123 1.21965 1.05114 0.89905 0.98033 1.20109 0.93014 1.01475 0.84133 1.60810 1.33802 1.32197 1.04565 1.21543 0.97595 0.97065 0.85060 1.22696 0.99397 0.98462 0.99594 1.20815 0.89447 0.98176 0.89309 1.44074 1.22081 1.32486 1.32916 1.19175 1.30684 0.91407 0.96741 0.91844 1.25032 1.02194 0.95511 0.96983 1.70032 1.42948 1.08932 1.32906 0.86319 0.79522 0.80019 0.81049 1.21451 1.21576 1.20526 1.20790 0.97134 0.88470 0.89092 1.22179 0.95499 1.00586 0.98155 1.75057 1.16623 1.24737 0.96856 1.78264 1.16444 0.96198 1.16138 0.91230 0.89771 0.91231 0.87007 0.89448 0.90932 0.91228 0.79565 0.89586 0.93429 0.84047 0.91180 0.92188 0.93431 0.96612 0.92969 0.93702 0.96554 0.89437 0.92788 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 9.52 37.16 0.35 -0.50 16 2 C 0.14 0.82 3.85 -67.93 -0.26 0.55 16 3 C -0.17 -0.60 8.84 37.15 0.33 -0.27 16 4 N -0.29 -2.96 3.25 -54.76 -0.18 -3.14 16 5 C -0.03 -0.33 10.62 -17.04 -0.18 -0.51 16 6 C -0.01 -0.16 6.76 -82.78 -0.56 -0.72 16 7 C 0.14 1.87 6.04 -4.98 -0.03 1.84 16 8 N -0.68 -10.23 6.24 -107.95 -0.67 -10.91 16 9 C 0.10 1.65 2.43 -67.67 -0.16 1.48 16 10 C -0.16 -2.88 5.33 -26.61 -0.14 -3.02 16 11 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 12 N -0.59 -15.12 2.99 -172.32 -0.52 -15.63 16 13 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 14 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 15 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 16 N -0.90 -26.51 11.19 55.49 0.62 -25.89 16 17 Si 0.90 22.01 29.59 -169.99 -5.03 16.98 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 22 C -0.12 -2.44 5.69 -26.61 -0.15 -2.59 16 23 N -0.27 -4.07 12.41 33.29 0.41 -3.65 16 24 N -0.09 -1.27 13.16 60.35 0.79 -0.47 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.25 7.18 -51.93 -0.37 -0.12 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.19 1.35 7.31 -52.49 -0.38 0.97 16 33 H 0.09 0.98 8.06 -51.93 -0.42 0.56 16 34 H 0.05 0.64 7.41 -51.92 -0.38 0.26 16 35 H 0.34 5.38 8.47 -39.29 -0.33 5.05 16 36 H 0.07 1.20 7.80 -51.93 -0.41 0.80 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.76 7.42 -51.93 -0.39 0.38 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 2.37 6.07 -51.93 -0.31 2.05 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -32.48 358.95 -7.85 -40.33 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.61 Total: 0.61 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.08 Total: -3.64 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.46 Total: -59.69 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.48 -7.85 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588925312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.639 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds