Wall clock time and date at job start Tue Mar 31 2020 02:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47477 * 2 1 4 4 N 1.46502 * 109.46860 * 119.99788 * 2 1 3 5 5 C 1.35312 * 125.86991 * 275.28804 * 4 2 1 6 6 C 1.35358 * 106.17645 * 180.18772 * 5 4 2 7 7 C 1.50692 * 126.75095 * 179.85826 * 6 5 4 8 8 N 1.46899 * 109.47691 * 94.71300 * 7 6 5 9 9 C 1.46894 * 111.00097 * 179.97438 * 8 7 6 10 10 C 1.53038 * 109.46101 * 275.06619 * 9 8 7 11 11 C 1.53195 * 109.31352 * 178.61797 * 10 9 8 12 12 N 1.46925 * 108.77449 * 54.63743 * 11 10 9 13 13 C 1.36939 * 120.63227 * 126.41611 * 12 11 10 14 14 H 1.08001 * 119.99747 * 331.82157 * 13 12 11 15 15 C 1.38811 * 120.00356 * 151.82431 * 13 12 11 16 16 N 1.31618 * 119.99696 * 343.07030 * 15 13 12 17 17 Si 1.86793 * 120.00115 * 163.07180 * 15 13 12 18 18 H 1.48508 * 109.46971 * 90.00191 * 17 15 13 19 19 H 1.48503 * 109.47224 * 209.99965 * 17 15 13 20 20 H 1.48495 * 109.47494 * 330.00298 * 17 15 13 21 21 C 1.46924 * 118.73961 * 306.39011 * 12 11 10 22 22 C 1.53048 * 109.45731 * 155.00169 * 9 8 7 23 23 N 1.33772 * 106.49247 * 359.59817 * 6 5 4 24 24 N 1.28631 * 108.88716 * 0.25521 * 23 6 5 25 25 H 1.09003 * 109.46847 * 300.00307 * 1 2 3 26 26 H 1.09005 * 109.47135 * 60.00068 * 1 2 3 27 27 H 1.09001 * 109.47679 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46852 * 239.99240 * 2 1 3 29 29 H 1.09005 * 109.46882 * 300.00087 * 3 2 1 30 30 H 1.09003 * 109.47333 * 59.99990 * 3 2 1 31 31 H 1.09003 * 109.47559 * 179.97438 * 3 2 1 32 32 H 1.08002 * 126.91431 * 0.04730 * 5 4 2 33 33 H 1.09000 * 109.47513 * 334.71001 * 7 6 5 34 34 H 1.09008 * 109.46952 * 214.71227 * 7 6 5 35 35 H 1.00897 * 110.99640 * 56.03873 * 8 7 6 36 36 H 1.08996 * 109.46656 * 35.03306 * 9 8 7 37 37 H 1.09001 * 109.49936 * 298.56800 * 10 9 8 38 38 H 1.08999 * 109.49975 * 58.66604 * 10 9 8 39 39 H 1.08996 * 109.58754 * 294.84666 * 11 10 9 40 40 H 1.09000 * 109.70308 * 174.49222 * 11 10 9 41 41 H 0.97000 * 120.00177 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.58962 * 293.82461 * 21 12 11 43 43 H 1.09000 * 109.70326 * 173.46613 * 21 12 11 44 44 H 1.08998 * 109.49421 * 301.33752 * 22 9 8 45 45 H 1.08997 * 109.49911 * 61.43099 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1872 -0.1356 2.4187 6 6 2.6556 -1.1216 3.2190 7 6 3.0062 -1.0069 4.6801 8 7 1.8553 -1.4205 5.4939 9 6 2.1615 -1.3220 6.9272 10 6 2.8650 -2.6008 7.3873 11 6 3.2135 -2.4804 8.8742 12 7 1.9898 -2.1624 9.6225 13 6 1.6044 -2.9304 10.6888 14 1 1.8800 -3.9738 10.7302 15 6 0.8595 -2.3679 11.7162 16 7 0.8029 -1.0596 11.8479 17 14 -0.0624 -3.4678 12.9118 18 1 0.8172 -3.7946 14.0628 19 1 -1.2745 -2.7621 13.3998 20 1 -0.4629 -4.7212 12.2234 21 6 1.1876 -1.0042 9.2055 22 6 0.8618 -1.1412 7.7149 23 7 2.7405 -2.2193 2.4592 24 7 2.3557 -1.9307 1.2662 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5139 -0.8899 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.9904 0.8887 2.6989 33 1 3.2625 0.0268 4.9122 34 1 3.8576 -1.6508 4.9011 35 1 1.5576 -2.3535 5.2512 36 1 2.8136 -0.4662 7.1014 37 1 2.2038 -3.4542 7.2366 38 1 3.7786 -2.7414 6.8098 39 1 3.9450 -1.6847 9.0148 40 1 3.6262 -3.4235 9.2325 41 1 0.2821 -0.6664 12.5656 42 1 1.7538 -0.0881 9.3730 43 1 0.2621 -0.9721 9.7804 44 1 0.3496 -0.2428 7.3703 45 1 0.2195 -2.0083 7.5611 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588925312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:50 Heat of formation + Delta-G solvation = 91.235428 kcal Electronic energy + Delta-G solvation = -23445.982398 eV Core-core repulsion = 20114.056726 eV Total energy + Delta-G solvation = -3331.925672 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -44.23486 -39.65003 -37.55108 -36.66625 -34.31070 -32.74800 -32.15145 -31.59432 -30.56510 -28.31216 -27.31446 -25.71684 -24.80538 -23.75243 -22.96732 -22.30429 -21.43642 -20.84112 -18.79303 -18.09645 -17.34201 -16.91870 -16.37135 -15.96451 -15.91611 -15.43756 -15.36555 -15.27068 -14.91154 -14.66340 -14.21385 -13.96955 -13.87688 -13.57713 -13.26869 -13.18495 -13.11677 -12.94471 -12.62254 -12.53612 -12.48400 -12.42847 -12.15696 -11.98132 -11.91786 -11.82329 -11.72347 -11.39359 -11.20499 -10.98748 -10.52944 -10.19740 -9.27162 -8.65985 -7.86419 -5.31215 0.68014 1.45350 1.46569 1.48119 1.50444 1.58011 2.52205 3.20113 3.29711 3.46984 3.60131 3.73307 3.80912 3.90448 4.00505 4.04466 4.12559 4.22646 4.41340 4.45952 4.55265 4.59207 4.63983 4.70858 4.75512 4.77359 4.79140 4.89847 4.95635 5.03495 5.08749 5.15888 5.16202 5.18785 5.25233 5.29592 5.36345 5.54711 5.66799 5.75579 5.77186 6.13127 6.39610 6.42311 7.16981 7.54064 7.88452 8.39779 9.20071 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.034201 B = 0.002655 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.484905 B =10543.099103 C =10761.752642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 C -0.160 4.160 4 N -0.279 5.279 5 C -0.017 4.017 6 C -0.033 4.033 7 C 0.148 3.852 8 N -0.677 5.677 9 C 0.109 3.891 10 C -0.147 4.147 11 C 0.145 3.855 12 N -0.612 5.612 13 C -0.264 4.264 14 H 0.062 0.938 15 C -0.050 4.050 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.273 1.273 21 C 0.179 3.821 22 C -0.110 4.110 23 N -0.305 5.305 24 N -0.122 5.122 25 H 0.066 0.934 26 H 0.113 0.887 27 H 0.048 0.952 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.222 0.778 33 H 0.107 0.893 34 H 0.042 0.958 35 H 0.337 0.663 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.018 0.982 40 H 0.049 0.951 41 H 0.250 0.750 42 H 0.000 1.000 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 8.196 -26.069 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 C -0.218 4.218 4 N -0.074 5.074 5 C -0.169 4.169 6 C -0.173 4.173 7 C 0.018 3.982 8 N -0.307 5.307 9 C -0.001 4.001 10 C -0.187 4.187 11 C 0.019 3.981 12 N -0.335 5.335 13 C -0.395 4.395 14 H 0.080 0.920 15 C -0.245 4.245 16 N -0.579 5.579 17 Si 0.794 3.206 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.199 1.199 21 C 0.053 3.947 22 C -0.150 4.150 23 N -0.171 5.171 24 N -0.100 5.100 25 H 0.085 0.915 26 H 0.131 0.869 27 H 0.067 0.933 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.238 0.762 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.155 0.845 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.018 0.982 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.231 7.569 -26.830 27.904 hybrid contribution -0.032 -0.461 1.658 1.721 sum 1.199 7.108 -25.172 26.183 Atomic orbital electron populations 1.22228 0.91571 1.02964 1.05164 1.22133 0.96541 0.94833 0.83719 1.22234 1.02132 0.91544 1.05888 1.47974 1.40908 1.07528 1.11004 1.23739 1.05479 1.03116 0.84574 1.22076 1.06610 0.90344 0.98229 1.20136 0.91771 1.02406 0.83900 1.60719 1.34841 1.31909 1.03231 1.21289 0.95863 0.96772 0.86142 1.22537 1.00410 0.98619 0.97177 1.20960 0.88097 0.97935 0.91070 1.44336 1.23725 1.32504 1.32967 1.19479 1.30739 0.91767 0.97489 0.92025 1.25776 1.03187 0.96755 0.98826 1.70175 1.43735 1.10432 1.33588 0.85309 0.78036 0.78387 0.78909 1.21027 1.21644 1.19857 1.20590 0.95098 0.87544 0.91503 1.21936 0.96888 1.00750 0.95389 1.74991 1.18033 1.26366 0.97751 1.78178 1.17900 0.98053 1.15894 0.91509 0.86893 0.93295 0.86465 0.86960 0.90317 0.91791 0.76186 0.87507 0.93962 0.84520 0.90471 0.93191 0.90906 0.96412 0.93283 0.94044 0.98181 0.92935 0.91286 0.94031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.52 71.98 0.69 -0.60 16 2 C 0.13 1.21 3.85 44.99 0.17 1.38 16 3 C -0.16 -0.63 8.84 71.98 0.64 0.01 16 4 N -0.28 -5.22 3.25 -327.18 -1.06 -6.29 16 5 C -0.02 -0.30 10.62 83.49 0.89 0.58 16 6 C -0.03 -0.82 6.76 41.60 0.28 -0.54 16 7 C 0.15 3.52 6.04 85.55 0.52 4.04 16 8 N -0.68 -18.97 6.24 -495.45 -3.09 -22.06 16 9 C 0.11 3.55 2.43 44.94 0.11 3.65 16 10 C -0.15 -5.07 5.33 30.67 0.16 -4.91 16 11 C 0.15 6.19 6.52 86.36 0.56 6.75 16 12 N -0.61 -31.57 2.99 -699.10 -2.09 -33.66 16 13 C -0.26 -15.00 9.58 84.03 0.81 -14.20 16 14 H 0.06 3.44 7.89 -2.91 -0.02 3.41 16 15 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 16 N -0.93 -55.96 11.19 21.65 0.24 -55.71 16 17 Si 0.97 45.81 29.59 68.60 2.03 47.84 16 18 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 C 0.18 8.77 5.30 86.36 0.46 9.23 16 22 C -0.11 -4.25 5.69 30.67 0.17 -4.08 16 23 N -0.31 -9.21 12.41 -48.60 -0.60 -9.81 16 24 N -0.12 -3.30 13.16 37.02 0.49 -2.82 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 -0.08 8.14 -2.38 -0.02 -0.09 16 30 H 0.08 0.24 7.18 -2.39 -0.02 0.22 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.22 2.30 7.31 -2.91 -0.02 2.28 16 33 H 0.11 2.09 8.06 -2.39 -0.02 2.07 16 34 H 0.04 1.06 7.41 -2.38 -0.02 1.04 16 35 H 0.34 10.18 8.47 -89.70 -0.76 9.42 16 36 H 0.08 2.46 7.80 -2.39 -0.02 2.44 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 2.17 7.42 -2.39 -0.02 2.16 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 41 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.05 2.93 6.07 -2.39 -0.01 2.92 16 44 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -71.96 358.95 1.99 -69.97 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.21 Total: 13.65 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 5.87 Total: -1.11 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -6.12 Total: -130.35 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -71.96 1.99 -69.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588925312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.210 kcal (2) G-P(sol) polarization free energy of solvation -71.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds