Wall clock time and date at job start Tue Mar 31 2020 02:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30835 * 125.96341 * 2 1 4 4 C 1.33241 * 109.82577 * 180.12075 * 3 2 1 5 5 C 1.50698 * 125.52278 * 179.85265 * 4 3 2 6 6 N 1.46899 * 109.47292 * 269.72181 * 5 4 3 7 7 C 1.46956 * 110.99677 * 170.00200 * 6 5 4 8 8 C 1.53057 * 109.36162 * 183.18894 * 7 6 5 9 9 N 1.46954 * 109.36263 * 301.59585 * 8 7 6 10 10 C 1.46908 * 110.99966 * 183.18687 * 9 8 7 11 11 H 1.08997 * 109.46863 * 186.20099 * 10 9 8 12 12 C 1.52997 * 109.47251 * 306.20425 * 10 9 8 13 13 C 1.53004 * 109.46687 * 66.20300 * 10 9 8 14 14 C 1.50696 * 109.47331 * 65.00011 * 13 10 9 15 15 H 1.08000 * 119.99811 * 0.02562 * 14 13 10 16 16 C 1.37870 * 120.00098 * 179.97438 * 14 13 10 17 17 N 1.31525 * 120.00085 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00010 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47362 * 89.99904 * 18 16 14 20 20 H 1.48502 * 109.47074 * 209.99675 * 18 16 14 21 21 H 1.48500 * 109.47090 * 329.99434 * 18 16 14 22 22 C 1.46956 * 110.88042 * 59.32532 * 9 8 7 23 23 C 1.46954 * 110.99900 * 293.79852 * 6 5 4 24 24 N 1.30707 * 108.94942 * 359.59561 * 4 3 2 25 25 N 1.34431 * 125.95880 * 179.67381 * 2 1 3 26 26 H 0.97001 * 126.82091 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47278 * 270.30567 * 1 2 3 28 28 H 1.09005 * 109.46895 * 30.30421 * 1 2 3 29 29 H 1.09000 * 109.47402 * 150.30327 * 1 2 3 30 30 H 1.09003 * 109.46825 * 149.72331 * 5 4 3 31 31 H 1.09002 * 109.47091 * 29.72372 * 5 4 3 32 32 H 1.09002 * 109.48908 * 303.15220 * 7 6 5 33 33 H 1.09002 * 109.49369 * 63.22349 * 7 6 5 34 34 H 1.08997 * 109.48880 * 61.56749 * 8 7 6 35 35 H 1.09004 * 109.48844 * 181.62946 * 8 7 6 36 36 H 1.09002 * 109.47098 * 59.99733 * 12 10 9 37 37 H 1.08997 * 109.47253 * 179.97438 * 12 10 9 38 38 H 1.08998 * 109.46977 * 300.00133 * 12 10 9 39 39 H 1.08997 * 109.46884 * 184.99892 * 13 10 9 40 40 H 1.08996 * 109.47184 * 305.00091 * 13 10 9 41 41 H 0.96999 * 119.99961 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.48908 * 180.71202 * 22 9 8 43 43 H 1.09000 * 109.51082 * 60.65091 * 22 9 8 44 44 H 1.08997 * 109.49355 * 296.78047 * 23 6 5 45 45 H 1.09004 * 109.48943 * 56.84596 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5553 0.6886 -0.0026 5 6 4.7373 1.6234 -0.0067 6 7 5.1222 1.9202 -1.3929 7 6 6.1113 3.0059 -1.4438 8 6 6.4256 3.3379 -2.9045 9 7 6.9330 2.1350 -3.5792 10 6 7.3179 2.4318 -4.9655 11 1 7.5853 1.5058 -5.4745 12 6 6.1435 3.0917 -5.6908 13 6 8.5180 3.3809 -4.9695 14 6 9.7104 2.6856 -4.3648 15 1 9.6213 1.6683 -4.0132 16 6 10.9153 3.3477 -4.2613 17 7 11.9559 2.7410 -3.7331 18 14 11.0695 5.1069 -4.8701 19 1 10.7432 6.0435 -3.7650 20 1 12.4598 5.3510 -5.3314 21 1 10.1284 5.3248 -5.9979 22 6 5.9439 1.0493 -3.5283 23 6 5.6296 0.7174 -2.0676 24 7 3.6194 -0.6168 0.0044 25 7 2.2964 -1.0881 0.0062 26 1 2.0092 -2.0146 0.0118 27 1 -0.3634 0.0055 1.0277 28 1 -0.3633 0.8873 -0.5186 29 1 -0.3634 -0.8927 -0.5091 30 1 5.5740 1.1533 0.5100 31 1 4.4698 2.5495 0.5024 32 1 5.7075 3.8892 -0.9490 33 1 7.0239 2.6906 -0.9381 34 1 5.5185 3.6793 -3.4032 35 1 7.1806 4.1231 -2.9446 36 1 5.8761 4.0177 -5.1818 37 1 6.4292 3.3123 -6.7193 38 1 5.2885 2.4155 -5.6879 39 1 8.7481 3.6714 -5.9945 40 1 8.2805 4.2694 -4.3846 41 1 12.8036 3.2067 -3.6607 42 1 6.3477 0.1660 -4.0231 43 1 5.0312 1.3643 -4.0341 44 1 6.5367 0.3759 -1.5689 45 1 4.8746 -0.0679 -2.0275 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591020967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:30 Heat of formation + Delta-G solvation = 101.682220 kcal Electronic energy + Delta-G solvation = -24074.944648 eV Core-core repulsion = 20743.471983 eV Total energy + Delta-G solvation = -3331.472665 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.30977 -39.17197 -36.39026 -33.50680 -32.60667 -32.49340 -31.07582 -30.49157 -28.58846 -27.86300 -27.18734 -24.34396 -23.32396 -22.49061 -21.55636 -20.50018 -19.89671 -18.56079 -18.02092 -16.52544 -16.32802 -15.65979 -15.02683 -14.98970 -14.63529 -14.44334 -14.16477 -13.90887 -13.72065 -13.35722 -13.16081 -12.89622 -12.71507 -12.42943 -12.21954 -12.04666 -11.88304 -11.68877 -11.43536 -11.35552 -10.97157 -10.62478 -10.59406 -10.43800 -10.18503 -10.15619 -9.91894 -9.66823 -9.64882 -9.47050 -8.98519 -8.39123 -8.20879 -7.44074 -5.87741 -3.81636 1.38425 2.41775 2.66655 3.37943 3.45716 3.48332 3.73955 4.14650 4.44730 4.54089 4.55420 4.57586 4.95609 5.00895 5.21188 5.36094 5.40706 5.46178 5.48485 5.52461 5.68861 5.71669 5.80546 5.81067 5.84697 5.95876 5.98530 6.06188 6.16264 6.24784 6.29166 6.36082 6.43393 6.55241 6.61104 6.82572 6.84322 7.08908 7.18919 7.20755 7.38288 7.84874 7.88094 7.95601 8.01147 8.75896 9.25140 9.75317 11.26351 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.003288 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.099482 B = 8513.640130 C = 8741.027603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.277 3.723 3 N -0.526 5.526 4 C 0.247 3.753 5 C 0.145 3.855 6 N -0.532 5.532 7 C 0.060 3.940 8 C 0.059 3.941 9 N -0.510 5.510 10 C 0.097 3.903 11 H 0.074 0.926 12 C -0.186 4.186 13 C -0.006 4.006 14 C -0.489 4.489 15 H 0.078 0.922 16 C 0.061 3.939 17 N -0.909 5.909 18 Si 0.872 3.128 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.268 1.268 22 C 0.058 3.942 23 C 0.059 3.941 24 N -0.311 5.311 25 N -0.486 5.486 26 H 0.438 0.562 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.017 0.983 40 H 0.013 0.987 41 H 0.259 0.741 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.046 0.954 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.558 -5.155 7.240 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.002 4.002 3 N -0.255 5.255 4 C -0.036 4.036 5 C 0.015 3.985 6 N -0.258 5.258 7 C -0.067 4.067 8 C -0.070 4.070 9 N -0.233 5.233 10 C -0.011 4.011 11 H 0.092 0.908 12 C -0.245 4.245 13 C -0.044 4.044 14 C -0.527 4.527 15 H 0.096 0.904 16 C -0.139 4.139 17 N -0.549 5.549 18 Si 0.701 3.299 19 H -0.206 1.206 20 H -0.217 1.217 21 H -0.193 1.193 22 C -0.070 4.070 23 C -0.069 4.069 24 N -0.141 5.141 25 N -0.204 5.204 26 H 0.283 0.717 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.764 -5.131 7.293 24.448 hybrid contribution -0.184 0.205 -0.289 0.399 sum -22.948 -4.927 7.005 24.494 Atomic orbital electron populations 1.20373 0.83789 1.04978 1.04400 1.24423 0.96613 0.82952 0.96195 1.70368 1.01454 1.29255 1.24458 1.24076 0.93231 0.89683 0.96589 1.20271 0.90473 0.96383 0.91372 1.62100 1.41924 1.08508 1.13301 1.22199 0.93264 0.93289 0.97964 1.22143 0.98397 0.93905 0.92533 1.62256 1.38026 1.06443 1.16605 1.21671 0.94062 0.99378 0.86030 0.90776 1.22543 0.99713 1.00991 1.01236 1.19685 0.93604 0.94633 0.96461 1.21053 0.92158 1.01556 1.37931 0.90401 1.25015 0.96044 0.97404 0.95391 1.69921 1.01451 1.37240 1.46318 0.86900 0.77042 0.86362 0.79643 1.20556 1.21695 1.19288 1.22098 0.94043 0.95781 0.95113 1.22188 0.98425 0.91466 0.94806 1.78062 0.96487 1.12605 1.26920 1.47998 1.04445 1.09944 1.58040 0.71678 0.89123 0.88331 0.89994 0.92155 0.88068 0.90556 0.93181 0.94644 0.89338 0.92755 0.92642 0.93758 0.96443 0.96931 0.93116 0.90870 0.95009 0.93525 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.51 36.01 0.38 0.04 16 2 C 0.28 2.65 8.24 -155.69 -1.28 1.37 16 3 N -0.53 -6.95 11.19 -8.16 -0.09 -7.04 16 4 C 0.25 3.43 6.79 -156.86 -1.06 2.37 16 5 C 0.15 1.95 5.59 -4.98 -0.03 1.92 16 6 N -0.53 -8.04 4.70 -235.90 -1.11 -9.15 16 7 C 0.06 0.94 5.61 -3.76 -0.02 0.92 16 8 C 0.06 1.03 4.75 -3.77 -0.02 1.01 16 9 N -0.51 -9.87 4.37 -226.48 -0.99 -10.86 16 10 C 0.10 1.94 2.26 -67.71 -0.15 1.79 16 11 H 0.07 1.54 8.03 -51.93 -0.42 1.13 16 12 C -0.19 -3.13 8.43 37.16 0.31 -2.82 16 13 C -0.01 -0.15 3.44 -27.88 -0.10 -0.25 16 14 C -0.49 -13.93 9.39 -34.44 -0.32 -14.26 16 15 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 16 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 17 N -0.91 -28.56 13.96 55.43 0.77 -27.78 16 18 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.27 -6.48 6.54 56.52 0.37 -6.12 16 22 C 0.06 0.99 5.33 -3.76 -0.02 0.97 16 23 C 0.06 0.95 5.44 -3.77 -0.02 0.93 16 24 N -0.31 -4.16 11.96 32.42 0.39 -3.77 16 25 N -0.49 -4.59 7.45 32.62 0.24 -4.35 16 26 H 0.44 2.44 8.96 -182.33 -1.63 0.80 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.10 1.21 8.03 -51.93 -0.42 0.80 16 32 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.60 6.41 -51.93 -0.33 0.27 16 35 H 0.09 1.69 6.25 -51.93 -0.32 1.37 16 36 H 0.05 0.90 6.40 -51.93 -0.33 0.57 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.69 6.76 -51.93 -0.35 0.34 16 39 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 40 H 0.01 0.30 5.71 -51.93 -0.30 0.00 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 43 H 0.03 0.53 6.76 -51.93 -0.35 0.18 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.11 6.56 -51.93 -0.34 0.77 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -34.78 349.56 -11.17 -45.95 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.55 Total: -1.28 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.43 Total: -4.32 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.79 Total: -62.95 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.78 -11.17 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591020967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.635 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds