Wall clock time and date at job start Tue Mar 31 2020 03:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34524 * 125.85284 * 2 1 4 4 N 1.38562 * 107.14577 * 179.97438 * 3 2 1 5 5 N 1.38816 * 139.84064 * 180.32329 * 4 3 2 6 6 C 1.28234 * 116.64525 * 180.10945 * 5 4 3 7 7 N 1.38568 * 124.91478 * 179.83438 * 6 5 4 8 8 C 1.48560 * 111.00251 * 59.59176 * 7 6 5 9 9 C 1.54378 * 104.59509 * 200.95831 * 8 7 6 10 10 C 1.54262 * 105.06299 * 23.85755 * 9 8 7 11 11 O 1.42893 * 110.32314 * 118.99261 * 10 9 8 12 12 C 1.50701 * 110.32389 * 241.10547 * 10 9 8 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 10 9 14 14 C 1.37871 * 119.99694 * 180.27653 * 12 10 9 15 15 N 1.31523 * 119.99908 * 179.72112 * 14 12 10 16 16 Si 1.86800 * 120.00405 * 359.71709 * 14 12 10 17 17 H 1.48500 * 109.47210 * 90.00069 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 C 1.48565 * 111.00030 * 304.17830 * 7 6 5 21 21 S 1.75760 * 110.16703 * 359.56667 * 6 5 4 22 22 C 1.34935 * 106.60986 * 359.97438 * 4 3 2 23 23 N 1.32371 * 108.87600 * 0.02562 * 22 4 3 24 24 H 1.08994 * 109.46690 * 90.00089 * 1 2 3 25 25 H 1.08998 * 109.47196 * 210.00642 * 1 2 3 26 26 H 1.08995 * 109.46787 * 330.00423 * 1 2 3 27 27 H 1.07998 * 126.42497 * 359.97438 * 3 2 1 28 28 H 1.09002 * 110.40873 * 82.18148 * 8 7 6 29 29 H 1.09003 * 110.51432 * 319.79122 * 8 7 6 30 30 H 1.08998 * 110.32900 * 264.95820 * 9 8 7 31 31 H 1.09005 * 110.40918 * 142.79832 * 9 8 7 32 32 H 0.96705 * 113.99824 * 181.42708 * 11 10 9 33 33 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 34 34 H 1.08995 * 110.41490 * 40.25924 * 20 7 6 35 35 H 1.09001 * 110.40732 * 277.82141 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2950 1.0903 0.0000 4 7 3.6074 0.6459 0.0006 5 7 4.8994 1.1536 0.0060 6 6 5.8538 0.2972 0.0015 7 7 7.2030 0.6132 0.0024 8 6 7.5618 1.4125 1.2021 9 6 8.8762 2.1245 0.8164 10 6 8.8639 2.1812 -0.7252 11 8 8.8858 3.5383 -1.1720 12 6 10.0420 1.4271 -1.2861 13 1 10.7431 0.9473 -0.6193 14 6 10.2281 1.3551 -2.6503 15 7 11.2593 0.7017 -3.1397 16 14 9.0158 2.1856 -3.8036 17 1 9.4578 3.5786 -4.0670 18 1 8.9562 1.4348 -5.0835 19 1 7.6695 2.2035 -3.1771 20 6 7.5431 1.4987 -1.1410 21 16 5.2030 -1.3354 0.0018 22 6 3.5580 -0.7025 0.0015 23 7 2.2907 -1.0846 0.0009 24 1 -0.3632 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9662 2.1191 -0.0004 28 1 7.7209 0.7595 2.0603 29 1 6.7835 2.1436 1.4209 30 1 9.7344 1.5514 1.1673 31 1 8.8990 3.1319 1.2321 32 1 8.8573 3.6362 -2.1337 33 1 11.3901 0.6507 -4.0994 34 1 6.7613 2.2432 -1.2911 35 1 7.6881 0.9105 -2.0472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591977017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:02 Heat of formation + Delta-G solvation = 113.956431 kcal Electronic energy + Delta-G solvation = -21376.444451 eV Core-core repulsion = 18118.872055 eV Total energy + Delta-G solvation = -3257.572395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.55285 -39.78311 -37.46367 -35.35717 -32.53149 -32.06235 -31.06550 -29.85816 -28.53449 -26.70468 -25.22867 -24.05062 -22.42092 -20.91009 -20.11982 -19.81933 -19.25014 -17.39415 -16.68964 -16.49822 -16.16961 -15.73921 -14.79844 -14.59563 -14.39235 -13.80003 -13.55857 -13.52936 -13.08616 -12.79851 -12.62986 -12.45019 -12.38774 -12.26474 -11.84708 -11.40047 -11.20157 -10.91065 -10.63440 -10.60217 -10.29717 -10.23005 -10.16255 -9.45514 -9.16414 -8.94868 -8.84720 -8.73382 -8.07092 -6.37260 -4.40875 0.43770 0.71859 1.30617 1.67456 1.83374 2.62916 2.96324 2.98946 3.14019 3.84778 4.04293 4.08963 4.61294 4.73426 4.94349 5.07469 5.20226 5.28139 5.34121 5.45173 5.55811 5.57938 5.64929 5.72841 5.74207 5.89412 6.20776 6.26475 6.33573 6.37097 6.61384 6.83965 6.89150 7.20601 7.32799 7.54892 8.15429 8.49997 8.68430 9.20563 10.75584 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.004625 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.465396 B = 6053.032348 C = 6189.362701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.034 3.966 3 C -0.014 4.014 4 N -0.299 5.299 5 N -0.284 5.284 6 C 0.274 3.726 7 N -0.410 5.410 8 C 0.039 3.961 9 C -0.098 4.098 10 C 0.218 3.782 11 O -0.570 6.570 12 C -0.525 4.525 13 H 0.089 0.911 14 C 0.078 3.922 15 N -0.878 5.878 16 Si 0.842 3.158 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.250 1.250 20 C 0.012 3.988 21 S 0.206 5.794 22 C 0.100 3.900 23 N -0.442 5.442 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.185 0.815 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.351 0.649 33 H 0.269 0.731 34 H 0.051 0.949 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.536 -0.046 6.289 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.100 4.100 3 C -0.149 4.149 4 N -0.074 5.074 5 N -0.103 5.103 6 C -0.113 4.113 7 N -0.137 5.137 8 C -0.088 4.088 9 C -0.136 4.136 10 C 0.178 3.822 11 O -0.379 6.379 12 C -0.562 4.562 13 H 0.107 0.893 14 C -0.126 4.126 15 N -0.515 5.515 16 Si 0.670 3.330 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.175 1.175 20 C -0.116 4.116 21 S 0.443 5.557 22 C -0.268 4.268 23 N -0.168 5.168 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.202 0.798 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.201 0.799 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.996 -1.462 6.736 16.504 hybrid contribution -1.173 2.254 -1.525 2.964 sum -16.169 0.793 5.211 17.007 Atomic orbital electron populations 1.20075 0.85915 1.03259 1.02859 1.20849 0.96754 0.87298 1.05088 1.22412 0.76923 1.01317 1.14232 1.47444 1.03614 1.05471 1.50905 1.74517 0.87098 1.25060 1.23616 1.26315 0.94872 0.94654 0.95425 1.63620 1.01892 1.41332 1.06856 1.23402 0.98642 0.95403 0.91394 1.22246 0.95728 1.00158 0.95456 1.19840 0.90965 0.79671 0.91726 1.86527 1.97075 1.29082 1.25250 1.21379 1.08922 1.33217 0.92730 0.89324 1.25014 0.95038 0.94427 0.98101 1.69852 1.27900 1.40303 1.13429 0.87791 0.82755 0.80506 0.81980 1.19513 1.20733 1.17474 1.24954 1.00049 0.94518 0.92097 1.85644 0.86060 1.03254 1.80707 1.26840 1.01007 0.85376 1.13616 1.70470 0.96102 1.29454 1.20748 0.90744 0.90537 0.90678 0.79822 0.89128 0.92353 0.89240 0.90533 0.79857 0.92066 0.93033 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.42 36.01 0.38 -0.16 16 2 C 0.03 0.44 7.07 -83.04 -0.59 -0.14 16 3 C -0.01 -0.19 11.95 -15.82 -0.19 -0.38 16 4 N -0.30 -5.00 4.40 -12.46 -0.05 -5.06 16 5 N -0.28 -5.03 11.04 30.49 0.34 -4.69 16 6 C 0.27 4.74 6.28 -88.89 -0.56 4.18 16 7 N -0.41 -7.53 5.47 -169.84 -0.93 -8.46 16 8 C 0.04 0.64 6.43 -2.18 -0.01 0.62 16 9 C -0.10 -1.80 6.44 -25.35 -0.16 -1.96 16 10 C 0.22 4.81 1.03 -90.39 -0.09 4.72 16 11 O -0.57 -12.88 12.92 -35.23 -0.46 -13.34 16 12 C -0.52 -13.56 8.83 -34.44 -0.30 -13.86 16 13 H 0.09 2.47 7.60 -52.49 -0.40 2.07 16 14 C 0.08 2.08 5.37 -17.82 -0.10 1.98 16 15 N -0.88 -24.94 13.96 55.43 0.77 -24.16 16 16 Si 0.84 18.85 23.18 -169.99 -3.94 14.91 16 17 H -0.27 -5.84 7.03 56.52 0.40 -5.45 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.25 -5.23 4.59 56.52 0.26 -4.97 16 20 C 0.01 0.24 3.69 -2.18 -0.01 0.23 16 21 S 0.21 3.18 23.37 -107.50 -2.51 0.67 16 22 C 0.10 1.68 8.99 -88.89 -0.80 0.88 16 23 N -0.44 -7.19 11.33 -9.79 -0.11 -7.30 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 0.92 7.66 -51.93 -0.40 0.53 16 30 H 0.09 1.63 7.42 -51.93 -0.39 1.24 16 31 H 0.08 1.32 7.98 -51.93 -0.41 0.90 16 32 H 0.35 7.67 4.33 45.56 0.20 7.86 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.05 1.07 7.33 -51.93 -0.38 0.68 16 35 H 0.10 2.14 5.17 -51.93 -0.27 1.87 16 LS Contribution 297.31 15.07 4.48 4.48 Total: -1.00 -30.34 297.31 -8.29 -38.63 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -3.44 Total: 8.21 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.44 Total: -3.89 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.02 Total: -49.67 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.46 Total: -13.34 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -3.94 Total: 14.91 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.51 Total: 0.67 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.34 -8.29 -38.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.585 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds