Wall clock time and date at job start Tue Mar 31 2020 03:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34524 * 125.85284 * 2 1 4 4 N 1.38562 * 107.14577 * 179.97438 * 3 2 1 5 5 N 1.38816 * 139.84064 * 180.32329 * 4 3 2 6 6 C 1.28234 * 116.64525 * 180.10945 * 5 4 3 7 7 N 1.38568 * 124.91478 * 179.83438 * 6 5 4 8 8 C 1.48560 * 111.00251 * 59.59176 * 7 6 5 9 9 C 1.54378 * 104.59509 * 200.95831 * 8 7 6 10 10 C 1.54262 * 105.06299 * 23.85755 * 9 8 7 11 11 O 1.42893 * 110.32314 * 118.99261 * 10 9 8 12 12 C 1.50701 * 110.32389 * 241.10547 * 10 9 8 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 10 9 14 14 C 1.37871 * 119.99694 * 180.27653 * 12 10 9 15 15 N 1.31523 * 119.99908 * 179.72112 * 14 12 10 16 16 Si 1.86800 * 120.00405 * 359.71709 * 14 12 10 17 17 H 1.48500 * 109.47210 * 90.00069 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 C 1.48565 * 111.00030 * 304.17830 * 7 6 5 21 21 S 1.75760 * 110.16703 * 359.56667 * 6 5 4 22 22 C 1.34935 * 106.60986 * 359.97438 * 4 3 2 23 23 N 1.32371 * 108.87600 * 0.02562 * 22 4 3 24 24 H 1.08994 * 109.46690 * 90.00089 * 1 2 3 25 25 H 1.08998 * 109.47196 * 210.00642 * 1 2 3 26 26 H 1.08995 * 109.46787 * 330.00423 * 1 2 3 27 27 H 1.07998 * 126.42497 * 359.97438 * 3 2 1 28 28 H 1.09002 * 110.40873 * 82.18148 * 8 7 6 29 29 H 1.09003 * 110.51432 * 319.79122 * 8 7 6 30 30 H 1.08998 * 110.32900 * 264.95820 * 9 8 7 31 31 H 1.09005 * 110.40918 * 142.79832 * 9 8 7 32 32 H 0.96705 * 113.99824 * 181.42708 * 11 10 9 33 33 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 34 34 H 1.08995 * 110.41490 * 40.25924 * 20 7 6 35 35 H 1.09001 * 110.40732 * 277.82141 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2950 1.0903 0.0000 4 7 3.6074 0.6459 0.0006 5 7 4.8994 1.1536 0.0060 6 6 5.8538 0.2972 0.0015 7 7 7.2030 0.6132 0.0024 8 6 7.5618 1.4125 1.2021 9 6 8.8762 2.1245 0.8164 10 6 8.8639 2.1812 -0.7252 11 8 8.8858 3.5383 -1.1720 12 6 10.0420 1.4271 -1.2861 13 1 10.7431 0.9473 -0.6193 14 6 10.2281 1.3551 -2.6503 15 7 11.2593 0.7017 -3.1397 16 14 9.0158 2.1856 -3.8036 17 1 9.4578 3.5786 -4.0670 18 1 8.9562 1.4348 -5.0835 19 1 7.6695 2.2035 -3.1771 20 6 7.5431 1.4987 -1.1410 21 16 5.2030 -1.3354 0.0018 22 6 3.5580 -0.7025 0.0015 23 7 2.2907 -1.0846 0.0009 24 1 -0.3632 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9662 2.1191 -0.0004 28 1 7.7209 0.7595 2.0603 29 1 6.7835 2.1436 1.4209 30 1 9.7344 1.5514 1.1673 31 1 8.8990 3.1319 1.2321 32 1 8.8573 3.6362 -2.1337 33 1 11.3901 0.6507 -4.0994 34 1 6.7613 2.2432 -1.2911 35 1 7.6881 0.9105 -2.0472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:02 Heat of formation + Delta-G solvation = 90.939181 kcal Electronic energy + Delta-G solvation = -21377.442554 eV Core-core repulsion = 18118.872055 eV Total energy + Delta-G solvation = -3258.570498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.69634 -41.23682 -38.87119 -36.89213 -34.52292 -33.31948 -32.11006 -31.18958 -30.18046 -27.73400 -26.92614 -25.47340 -23.79195 -22.03719 -21.61488 -21.20778 -20.46344 -19.27233 -18.12916 -17.99869 -17.55565 -17.05494 -16.20097 -15.93948 -15.75899 -15.40200 -14.87901 -14.70693 -14.50198 -14.30124 -14.15818 -13.91223 -13.45127 -13.21128 -13.11083 -12.83268 -12.76996 -12.33427 -12.19973 -12.04861 -12.01562 -11.67683 -11.35066 -11.23288 -10.90763 -10.62263 -10.27294 -10.24500 -9.19784 -8.41105 -6.49709 -0.76874 -0.53520 0.09144 0.49479 0.63698 1.18903 1.20188 1.31867 1.58435 2.15059 2.53971 2.80740 2.90765 3.52952 3.61823 3.66430 3.81376 4.01516 4.12696 4.13610 4.28554 4.47988 4.58564 4.64907 4.74552 4.85310 4.87009 4.89048 4.96039 5.14911 5.26505 5.44229 5.47150 5.49144 6.01795 6.14944 6.44791 6.58222 6.73093 7.16268 8.75026 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.004625 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.465396 B = 6053.032348 C = 6189.362701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.032 3.968 3 C -0.019 4.019 4 N -0.308 5.308 5 N -0.294 5.294 6 C 0.262 3.738 7 N -0.418 5.418 8 C 0.046 3.954 9 C -0.096 4.096 10 C 0.211 3.789 11 O -0.573 6.573 12 C -0.529 4.529 13 H 0.053 0.947 14 C 0.026 3.974 15 N -0.928 5.928 16 Si 0.899 3.101 17 H -0.254 1.254 18 H -0.286 1.286 19 H -0.227 1.227 20 C 0.020 3.980 21 S 0.235 5.765 22 C 0.070 3.930 23 N -0.462 5.462 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.217 0.783 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.354 0.646 33 H 0.270 0.730 34 H 0.055 0.945 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.518 0.998 6.852 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C -0.152 4.152 4 N -0.085 5.085 5 N -0.114 5.114 6 C -0.124 4.124 7 N -0.146 5.146 8 C -0.081 4.081 9 C -0.134 4.134 10 C 0.171 3.829 11 O -0.382 6.382 12 C -0.567 4.567 13 H 0.071 0.929 14 C -0.174 4.174 15 N -0.567 5.567 16 Si 0.724 3.276 17 H -0.180 1.180 18 H -0.213 1.213 19 H -0.151 1.151 20 C -0.108 4.108 21 S 0.472 5.528 22 C -0.297 4.297 23 N -0.189 5.189 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.122 0.878 27 H 0.234 0.766 28 H 0.137 0.863 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.204 0.796 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.999 -0.414 7.328 19.439 hybrid contribution -0.308 1.883 -1.621 2.504 sum -18.307 1.469 5.707 19.232 Atomic orbital electron populations 1.20272 0.82609 1.04795 1.04163 1.21672 0.98601 0.86291 1.03547 1.23187 0.75761 1.03107 1.13160 1.47670 1.03877 1.05623 1.51356 1.74390 0.87728 1.25662 1.23593 1.26255 0.94312 0.95593 0.96240 1.63581 1.03014 1.41254 1.06702 1.23457 0.97392 0.95835 0.91457 1.22232 0.96999 1.01325 0.92885 1.19885 0.90175 0.78952 0.93913 1.86515 1.97094 1.29068 1.25556 1.21590 1.09614 1.33004 0.92501 0.92920 1.25788 0.96713 0.95036 0.99876 1.70005 1.30277 1.42592 1.13820 0.86822 0.81588 0.79856 0.79344 1.17984 1.21286 1.15103 1.24599 0.99120 0.94534 0.92581 1.85470 0.85555 1.01571 1.80236 1.27066 1.01572 0.85811 1.15217 1.70484 0.96316 1.30969 1.21092 0.89425 0.90367 0.87797 0.76593 0.86326 0.91453 0.89712 0.89138 0.79601 0.92098 0.92642 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 10.42 71.24 0.74 -0.07 16 2 C 0.03 0.76 7.07 41.41 0.29 1.05 16 3 C -0.02 -0.46 11.95 82.78 0.99 0.53 16 4 N -0.31 -9.68 4.40 -193.33 -0.85 -10.53 16 5 N -0.29 -9.84 11.04 -57.44 -0.63 -10.48 16 6 C 0.26 8.68 6.28 179.74 1.13 9.81 16 7 N -0.42 -14.83 5.47 -691.26 -3.78 -18.61 16 8 C 0.05 1.39 6.43 86.45 0.56 1.94 16 9 C -0.10 -3.44 6.44 31.49 0.20 -3.23 16 10 C 0.21 9.16 1.03 -10.64 -0.01 9.15 16 11 O -0.57 -25.06 12.92 -148.98 -1.92 -26.98 16 12 C -0.53 -27.94 8.83 25.60 0.23 -27.72 16 13 H 0.05 3.08 7.60 -2.91 -0.02 3.06 16 14 C 0.03 1.39 5.37 84.65 0.45 1.84 16 15 N -0.93 -54.47 13.96 21.45 0.30 -54.17 16 16 Si 0.90 38.94 23.18 68.60 1.59 40.53 16 17 H -0.25 -10.37 7.03 99.48 0.70 -9.67 16 18 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.23 -8.95 4.59 99.48 0.46 -8.49 16 20 C 0.02 0.81 3.69 86.45 0.32 1.13 16 21 S 0.23 6.97 23.37 -56.49 -1.32 5.65 16 22 C 0.07 2.26 8.99 179.74 1.62 3.87 16 23 N -0.46 -14.24 11.33 -184.88 -2.09 -16.34 16 24 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.22 3.55 8.06 -2.91 -0.02 3.52 16 28 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.07 1.95 7.66 -2.39 -0.02 1.94 16 30 H 0.08 3.07 7.42 -2.39 -0.02 3.05 16 31 H 0.09 2.95 7.98 -2.38 -0.02 2.93 16 32 H 0.35 14.79 4.33 -74.05 -0.32 14.47 16 33 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.06 2.18 7.33 -2.39 -0.02 2.16 16 35 H 0.08 3.47 5.17 -2.39 -0.01 3.45 16 Total: -1.00 -66.66 297.31 -1.63 -68.29 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.56 Total: 24.32 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 6.52 Total: -1.69 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -7.06 Total: -110.12 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -1.92 Total: -26.98 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.59 Total: 40.53 kcal Atomic # 16 Polarization: 6.97 SS G_CDS: -1.32 Total: 5.65 kcal Total: -66.66 -1.63 -68.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.229 kcal (2) G-P(sol) polarization free energy of solvation -66.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds