Wall clock time and date at job start Tue Mar 31 2020 03:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.35886 * 2 1 4 4 S 1.83096 * 110.40138 * 122.32556 * 2 1 3 5 5 C 1.83452 * 97.47767 * 121.19099 * 4 2 1 6 6 C 1.55137 * 102.20368 * 22.89922 * 5 4 2 7 7 C 1.53850 * 106.90004 * 317.88569 * 6 5 4 8 8 H 1.09003 * 109.60878 * 287.33547 * 7 6 5 9 9 N 1.46500 * 109.61049 * 167.17732 * 7 6 5 10 10 S 1.65596 * 120.00063 * 95.49895 * 9 7 6 11 11 O 1.42103 * 106.39863 * 178.54143 * 10 9 7 12 12 O 1.42095 * 106.40488 * 311.45572 * 10 9 7 13 13 N 1.65591 * 107.21993 * 65.00270 * 10 9 7 14 14 C 1.46507 * 119.99845 * 269.99423 * 13 10 9 15 15 C 1.46505 * 120.00306 * 90.00126 * 13 10 9 16 16 C 1.50694 * 109.47150 * 95.00038 * 15 13 10 17 17 H 1.07997 * 120.00301 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99807 * 180.02562 * 16 15 13 19 19 N 1.31512 * 120.00209 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99983 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47372 * 89.99758 * 20 18 16 22 22 H 1.48499 * 109.47098 * 209.99762 * 20 18 16 23 23 H 1.48492 * 109.47384 * 329.99772 * 20 18 16 24 24 H 1.08994 * 109.47000 * 300.70272 * 1 2 3 25 25 H 1.09004 * 109.46990 * 60.70006 * 1 2 3 26 26 H 1.08999 * 109.47313 * 180.70157 * 1 2 3 27 27 H 1.09003 * 110.86059 * 141.08032 * 5 4 2 28 28 H 1.09000 * 110.85664 * 264.72132 * 5 4 2 29 29 H 1.09000 * 109.97551 * 77.24837 * 6 5 4 30 30 H 1.09003 * 109.97528 * 198.52327 * 6 5 4 31 31 H 0.97001 * 119.99440 * 275.49583 * 9 7 6 32 32 H 1.09003 * 109.46314 * 90.00245 * 14 13 10 33 33 H 1.09000 * 109.47432 * 209.99691 * 14 13 10 34 34 H 1.08999 * 109.47054 * 330.00540 * 14 13 10 35 35 H 1.08998 * 109.47101 * 214.99892 * 15 13 10 36 36 H 1.09003 * 109.46897 * 334.99482 * 15 13 10 37 37 H 0.97003 * 120.00714 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0219 0.0000 4 16 2.1683 -0.9177 1.4502 5 6 3.1344 -2.1766 0.5297 6 6 3.3857 -1.4691 -0.8279 7 6 2.0703 -0.7741 -1.2202 8 1 1.3405 -1.5215 -1.5317 9 7 2.3165 0.1574 -2.3238 10 16 2.0528 -0.3223 -3.8867 11 8 2.3459 0.8011 -4.7060 12 8 2.6961 -1.5807 -4.0342 13 7 0.4290 -0.6057 -4.0451 14 6 -0.1115 -1.9401 -3.7742 15 6 -0.4671 0.4780 -4.4563 16 6 -0.6766 0.4180 -5.9474 17 1 -0.1906 -0.3502 -6.5306 18 6 -1.4880 1.3445 -6.5673 19 7 -2.0794 2.2802 -5.8573 20 14 -1.7473 1.2706 -8.4158 21 1 -2.9197 0.4104 -8.7173 22 1 -1.9909 2.6398 -8.9366 23 1 -0.5374 0.7029 -9.0630 24 1 -0.3633 0.5247 0.8836 25 1 -0.3633 0.5029 -0.8962 26 1 -0.3634 -1.0276 0.0126 27 1 4.0758 -2.3901 1.0362 28 1 2.5521 -3.0874 0.3907 29 1 4.1798 -0.7301 -0.7213 30 1 3.6592 -2.2035 -1.5855 31 1 2.6340 1.0551 -2.1389 32 1 -0.3865 -2.0139 -2.7220 33 1 -0.9933 -2.1075 -4.3928 34 1 0.6431 -2.6917 -4.0061 35 1 -1.4260 0.3683 -3.9500 36 1 -0.0232 1.4373 -4.1900 37 1 -2.6506 2.9319 -6.2933 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592109443.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:14 Heat of formation + Delta-G solvation = -106.550589 kcal Electronic energy + Delta-G solvation = -20836.876953 eV Core-core repulsion = 17672.893856 eV Total energy + Delta-G solvation = -3163.983097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.93380 -38.16600 -37.21469 -36.87044 -34.50461 -33.31306 -32.78278 -29.67327 -26.86100 -26.59245 -24.22243 -24.08523 -22.06483 -20.56890 -19.05122 -18.42332 -18.22507 -17.78536 -17.25930 -16.76354 -16.15529 -15.97824 -15.13615 -15.08519 -14.94690 -14.28168 -14.16070 -14.01686 -13.92156 -13.76340 -13.33757 -13.26993 -13.16933 -13.05575 -12.94178 -12.92055 -12.54858 -12.46426 -12.36446 -12.11076 -11.99331 -11.88028 -11.73782 -10.94762 -10.62010 -10.55693 -9.79626 -8.70354 -8.20406 -6.31795 -0.37574 0.78131 1.35601 1.39134 1.41531 1.51708 2.04080 2.40433 2.60617 3.11024 3.28648 3.43521 3.67620 3.80911 3.87465 4.06829 4.13842 4.26181 4.35810 4.63504 4.69369 4.74543 4.80752 4.81696 4.91055 4.99789 5.06658 5.12536 5.21658 5.27561 5.45843 5.69455 5.83105 6.04646 6.12176 6.76582 7.37232 8.86949 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.004785 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.954758 B = 5849.933359 C = 6298.316260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.041 4.041 3 H 0.110 0.890 4 S -0.311 6.311 5 C -0.060 4.060 6 C -0.148 4.148 7 C 0.148 3.852 8 H 0.099 0.901 9 N -1.109 6.109 10 S 2.797 3.203 11 O -1.010 7.010 12 O -1.002 7.002 13 N -1.000 6.000 14 C 0.085 3.915 15 C 0.274 3.726 16 C -0.550 4.550 17 H 0.051 0.949 18 C 0.014 3.986 19 N -0.923 5.923 20 Si 0.954 3.046 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.275 1.275 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.424 0.576 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.017 0.983 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 -8.227 14.218 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 H 0.128 0.872 4 S -0.085 6.085 5 C -0.208 4.208 6 C -0.188 4.188 7 C 0.039 3.961 8 H 0.117 0.883 9 N -0.870 5.870 10 S 2.805 3.195 11 O -0.994 6.994 12 O -0.985 6.985 13 N -0.842 5.842 14 C -0.060 4.060 15 C 0.150 3.850 16 C -0.589 4.589 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.779 3.221 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.200 1.200 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.141 0.859 28 H 0.125 0.875 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.260 0.740 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.548 -8.205 14.654 18.413 hybrid contribution -0.299 0.671 -1.934 2.068 sum 7.249 -7.534 12.721 16.466 Atomic orbital electron populations 1.21902 0.91396 1.03607 1.02763 1.23995 0.99785 1.01590 0.91690 0.87171 1.87716 1.65462 1.38588 1.16764 1.24256 1.02905 0.98134 0.95489 1.23058 0.97768 1.00892 0.97062 1.21880 0.97420 0.90449 0.86341 0.88336 1.55937 1.82962 1.24729 1.23409 1.01286 0.72856 0.72341 0.73018 1.93587 1.84615 1.54458 1.66731 1.93512 1.74239 1.44529 1.86250 1.57453 1.26264 1.18068 1.82452 1.21644 1.00930 0.81803 1.01660 1.18594 0.89168 0.83540 0.93679 1.21847 1.28606 1.13859 0.94613 0.93068 1.25700 0.95337 0.94729 1.02811 1.69994 1.31818 1.17014 1.37459 0.85623 0.78636 0.77735 0.80137 1.19076 1.20472 1.20002 0.91105 0.91837 0.90856 0.85871 0.87511 0.89108 0.88602 0.74050 0.90887 0.91008 0.90488 0.95109 0.96502 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.19 71.98 0.66 -2.13 16 2 C -0.04 -0.81 3.52 31.03 0.11 -0.70 16 3 H 0.11 2.12 7.85 -2.39 -0.02 2.10 16 4 S -0.31 -6.07 22.69 -56.49 -1.28 -7.35 16 5 C -0.06 -0.89 7.38 72.71 0.54 -0.35 16 6 C -0.15 -2.70 6.08 31.61 0.19 -2.50 16 7 C 0.15 3.17 2.66 45.71 0.12 3.30 16 8 H 0.10 2.08 6.32 -2.39 -0.02 2.06 16 9 N -1.11 -28.99 5.55 -166.39 -0.92 -29.91 16 10 S 2.80 103.11 6.00 -56.49 -0.34 102.77 16 11 O -1.01 -47.34 17.11 -128.00 -2.19 -49.53 16 12 O -1.00 -37.64 16.43 -128.00 -2.10 -39.74 16 13 N -1.00 -38.67 3.23 -543.20 -1.75 -40.42 16 14 C 0.08 2.60 10.09 127.77 1.29 3.89 16 15 C 0.27 13.33 5.08 85.63 0.43 13.77 16 16 C -0.55 -30.54 9.38 25.60 0.24 -30.30 16 17 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 18 C 0.01 0.77 5.46 84.66 0.46 1.24 16 19 N -0.92 -53.29 13.29 21.45 0.28 -53.01 16 20 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 27 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 1.88 8.07 -2.39 -0.02 1.86 16 31 H 0.42 9.70 8.64 -96.74 -0.84 8.86 16 32 H 0.07 1.71 7.41 -2.39 -0.02 1.69 16 33 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 34 H 0.08 2.19 7.02 -2.39 -0.02 2.18 16 35 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 36 H 0.02 0.89 7.61 -2.39 -0.02 0.87 16 37 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -69.22 328.08 -2.00 -71.22 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.23 Total: 13.61 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 4.05 Total: -13.79 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -2.39 Total: -123.34 kcal Atomic # 8 Polarization: -84.98 SS G_CDS: -4.29 Total: -89.27 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 97.04 SS G_CDS: -1.62 Total: 95.42 kcal Total: -69.22 -2.00 -71.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592109443.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.330 kcal (2) G-P(sol) polarization free energy of solvation -69.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds