Wall clock time and date at job start Tue Mar 31 2020 03:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.38731 * 2 1 4 4 S 1.83392 * 110.34158 * 237.77629 * 2 1 3 5 5 C 1.83985 * 95.85456 * 221.37522 * 4 2 1 6 6 C 1.55163 * 100.90478 * 35.34907 * 5 4 2 7 7 C 1.52932 * 108.96100 * 318.56254 * 6 5 4 8 8 H 1.09002 * 108.88814 * 269.44611 * 7 6 5 9 9 N 1.46502 * 108.88630 * 150.89823 * 7 6 5 10 10 S 1.65598 * 120.00204 * 96.45311 * 9 7 6 11 11 O 1.42100 * 106.39953 * 311.45568 * 10 9 7 12 12 O 1.42105 * 106.40088 * 178.54259 * 10 9 7 13 13 N 1.65593 * 107.21993 * 65.00171 * 10 9 7 14 14 C 1.46502 * 119.99605 * 269.99784 * 13 10 9 15 15 C 1.46499 * 120.00395 * 90.00069 * 13 10 9 16 16 C 1.50701 * 109.46992 * 264.99836 * 15 13 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 H 1.09000 * 109.46985 * 297.76970 * 1 2 3 25 25 H 1.08994 * 109.47326 * 57.77210 * 1 2 3 26 26 H 1.09002 * 109.46536 * 177.77025 * 1 2 3 27 27 H 1.08998 * 111.13057 * 277.44468 * 5 4 2 28 28 H 1.08996 * 111.16853 * 153.27424 * 5 4 2 29 29 H 1.09005 * 109.59769 * 198.62884 * 6 5 4 30 30 H 1.08998 * 109.45204 * 78.40866 * 6 5 4 31 31 H 0.97004 * 119.99921 * 276.44973 * 9 7 6 32 32 H 1.09000 * 109.47587 * 270.00096 * 14 13 10 33 33 H 1.08997 * 109.47205 * 30.00247 * 14 13 10 34 34 H 1.09003 * 109.46728 * 150.00070 * 14 13 10 35 35 H 1.09002 * 109.47391 * 144.99826 * 15 13 10 36 36 H 1.09001 * 109.46813 * 24.99883 * 15 13 10 37 37 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 16 2.1675 -0.9169 -1.4547 5 6 3.5206 -1.7796 -0.5546 6 6 2.8495 -2.0200 0.8236 7 6 2.0644 -0.7686 1.2191 8 1 2.7167 -0.1090 1.7914 9 7 0.9341 -1.1648 2.0627 10 16 1.0653 -1.0897 3.7117 11 8 2.2909 -1.7262 4.0461 12 8 -0.1912 -1.5002 4.2333 13 7 1.2411 0.5061 4.1173 14 6 2.5789 1.0973 4.2017 15 6 0.0590 1.3268 4.3918 16 6 -0.3443 2.0615 3.1393 17 1 0.2230 1.9299 2.2297 18 6 -1.4380 2.9008 3.1543 19 7 -1.7902 3.5416 2.0611 20 14 -2.4196 3.1278 4.7273 21 1 -1.8531 4.2587 5.5054 22 1 -3.8357 3.4200 4.3893 23 1 -2.3502 1.8854 5.5378 24 1 -0.3633 0.4788 0.9093 25 1 -0.3634 0.5480 -0.8693 26 1 -0.3632 -1.0269 -0.0400 27 1 4.3982 -1.1405 -0.4581 28 1 3.7755 -2.7230 -1.0374 29 1 3.6151 -2.2234 1.5725 30 1 2.1714 -2.8705 0.7538 31 1 0.1088 -1.4712 1.6553 32 1 2.9621 0.9858 5.2160 33 1 3.2450 0.5900 3.5039 34 1 2.5249 2.1560 3.9481 35 1 0.2907 2.0468 5.1767 36 1 -0.7606 0.6860 4.7170 37 1 -2.5595 4.1324 2.0718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592109449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:21 Heat of formation + Delta-G solvation = -69.945410 kcal Electronic energy + Delta-G solvation = -21333.113744 eV Core-core repulsion = 18170.717967 eV Total energy + Delta-G solvation = -3162.395777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -37.94296 -36.72983 -35.71413 -35.38012 -32.53026 -32.27895 -31.04941 -28.50553 -25.97439 -25.26875 -23.30627 -22.01138 -20.23394 -19.12026 -17.68485 -16.91993 -16.88602 -16.42920 -16.19054 -15.23512 -14.89770 -14.28515 -14.01667 -13.78460 -13.41720 -13.11109 -12.98309 -12.85825 -12.51352 -12.48266 -11.96222 -11.89635 -11.66224 -11.41663 -11.38713 -11.35213 -11.07906 -11.03505 -10.84052 -10.65028 -10.58259 -10.22838 -9.78283 -9.58924 -9.37097 -8.70813 -8.20318 -7.64132 -6.21994 -4.23033 1.12207 1.88980 2.38439 3.20826 3.28302 3.34540 3.35989 3.98861 4.30391 4.43545 4.68768 4.88180 4.88965 4.96008 5.11215 5.14425 5.26427 5.43346 5.53301 5.66749 5.67150 5.88947 5.96767 6.02913 6.15574 6.24238 6.31512 6.35505 6.73340 6.77713 7.00093 7.15318 7.36992 7.48114 8.33902 8.79871 9.38768 10.89419 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.017432 B = 0.006999 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.876138 B = 3999.627351 C = 5000.418415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.031 4.031 3 H 0.106 0.894 4 S -0.306 6.306 5 C -0.068 4.068 6 C -0.142 4.142 7 C 0.160 3.840 8 H 0.089 0.911 9 N -1.116 6.116 10 S 2.788 3.212 11 O -0.996 6.996 12 O -0.979 6.979 13 N -0.991 5.991 14 C 0.102 3.898 15 C 0.213 3.787 16 C -0.545 4.545 17 H 0.085 0.915 18 C 0.078 3.922 19 N -0.890 5.890 20 Si 0.866 3.134 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.261 1.261 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.419 0.581 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.048 0.952 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.239 -7.633 -2.441 12.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 H 0.124 0.876 4 S -0.080 6.080 5 C -0.216 4.216 6 C -0.183 4.183 7 C 0.050 3.950 8 H 0.107 0.893 9 N -0.876 5.876 10 S 2.795 3.205 11 O -0.979 6.979 12 O -0.964 6.964 13 N -0.833 5.833 14 C -0.044 4.044 15 C 0.090 3.910 16 C -0.584 4.584 17 H 0.103 0.897 18 C -0.126 4.126 19 N -0.527 5.527 20 Si 0.693 3.307 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.185 1.185 24 H 0.124 0.876 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.256 0.744 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.895 -8.197 -2.965 12.454 hybrid contribution -0.555 0.682 1.344 1.606 sum 8.339 -7.515 -1.622 11.342 Atomic orbital electron populations 1.21884 0.90765 1.02118 1.05109 1.23943 1.00897 1.00549 0.90724 0.87602 1.87877 1.40280 1.59007 1.20821 1.24242 0.97991 1.02787 0.96620 1.22917 1.00188 0.99170 0.96006 1.21186 0.86959 0.94443 0.92447 0.89295 1.56264 1.22986 1.82204 1.26155 1.01697 0.72874 0.73102 0.72843 1.93557 1.47169 1.74137 1.83043 1.93588 1.43679 1.81627 1.77471 1.57393 1.12735 1.29486 1.83671 1.21331 0.82172 1.00525 1.00390 1.19630 0.82352 0.91339 0.97711 1.21459 1.13489 1.26559 0.96854 0.89692 1.24834 0.96748 0.94971 0.96018 1.69877 1.26956 1.28624 1.27270 0.86989 0.80004 0.79384 0.84332 1.20073 1.20944 1.18533 0.87634 0.92050 0.92365 0.89099 0.87713 0.89033 0.89582 0.74419 0.93457 0.92776 0.90384 0.95013 0.93448 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.97 37.16 0.30 -1.91 16 2 C -0.03 -0.45 3.92 -26.36 -0.10 -0.55 16 3 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 4 S -0.31 -4.12 22.66 -107.50 -2.44 -6.55 16 5 C -0.07 -0.70 7.52 38.30 0.29 -0.41 16 6 C -0.14 -1.65 5.99 -25.62 -0.15 -1.80 16 7 C 0.16 2.17 3.15 -67.60 -0.21 1.95 16 8 H 0.09 1.17 6.01 -51.93 -0.31 0.85 16 9 N -1.12 -17.02 4.51 -4.61 -0.02 -17.05 16 10 S 2.79 50.44 5.98 -107.50 -0.64 49.80 16 11 O -1.00 -18.41 16.97 -57.17 -0.97 -19.38 16 12 O -0.98 -20.97 16.69 -57.17 -0.95 -21.93 16 13 N -0.99 -18.46 3.23 -123.05 -0.40 -18.86 16 14 C 0.10 1.56 10.11 59.85 0.61 2.17 16 15 C 0.21 4.69 4.48 -5.19 -0.02 4.66 16 16 C -0.54 -13.44 9.65 -34.44 -0.33 -13.77 16 17 H 0.09 2.16 6.86 -52.49 -0.36 1.80 16 18 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.89 -24.73 13.96 55.43 0.77 -23.96 16 20 Si 0.87 20.07 27.47 -169.99 -4.67 15.40 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 24 H 0.11 1.98 6.09 -51.93 -0.32 1.66 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.83 7.04 -51.93 -0.37 0.46 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16 31 H 0.42 6.09 6.45 -34.47 -0.22 5.87 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.71 6.10 -51.93 -0.32 0.40 16 34 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 35 H 0.03 0.68 7.54 -51.93 -0.39 0.29 16 36 H 0.05 1.11 5.97 -51.93 -0.31 0.80 16 37 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 315.81 15.07 4.76 4.76 Total: -1.00 -30.06 315.81 -9.43 -39.49 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.13 Total: 6.00 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 0.27 Total: -7.71 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.36 Total: -59.87 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.92 Total: -41.31 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Atomic # 16 Polarization: 46.32 SS G_CDS: -3.08 Total: 43.24 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.06 -9.43 -39.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592109449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.458 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds