Wall clock time and date at job start Tue Mar 31 2020 03:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.69926 * 2 1 4 4 S 1.83957 * 110.95040 * 123.43108 * 2 1 3 5 5 C 1.83962 * 94.80484 * 152.84393 * 4 2 1 6 6 C 1.54258 * 102.57887 * 325.50162 * 5 4 2 7 7 C 1.52338 * 112.58835 * 24.53138 * 6 5 4 8 8 H 1.09009 * 108.86565 * 120.81506 * 7 6 5 9 9 N 1.46490 * 108.86910 * 239.17462 * 7 6 5 10 10 S 1.65596 * 120.00310 * 268.07903 * 9 7 6 11 11 O 1.42105 * 106.40342 * 178.54079 * 10 9 7 12 12 O 1.42097 * 106.40322 * 311.45713 * 10 9 7 13 13 N 1.65598 * 107.21872 * 64.99948 * 10 9 7 14 14 C 1.46497 * 120.00042 * 269.99784 * 13 10 9 15 15 C 1.46507 * 119.99882 * 90.00253 * 13 10 9 16 16 C 1.50706 * 109.47040 * 94.99991 * 15 13 10 17 17 H 1.08000 * 119.99651 * 359.97438 * 16 15 13 18 18 C 1.37872 * 119.99772 * 179.97438 * 16 15 13 19 19 N 1.31518 * 119.99767 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00167 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46711 * 60.00425 * 20 18 16 22 22 H 1.48496 * 109.47090 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47008 * 300.00271 * 20 18 16 24 24 H 1.09007 * 109.47132 * 180.69829 * 1 2 3 25 25 H 1.08994 * 109.47212 * 300.69640 * 1 2 3 26 26 H 1.09002 * 109.47417 * 60.70073 * 1 2 3 27 27 H 1.09004 * 110.78210 * 207.23315 * 5 4 2 28 28 H 1.08999 * 110.95259 * 83.85073 * 5 4 2 29 29 H 1.09003 * 108.87369 * 263.70904 * 6 5 4 30 30 H 1.09001 * 108.75368 * 145.27058 * 6 5 4 31 31 H 0.97003 * 119.99742 * 88.07556 * 9 7 6 32 32 H 1.09004 * 109.46972 * 90.00396 * 14 13 10 33 33 H 1.09004 * 109.47132 * 209.99701 * 14 13 10 34 34 H 1.08995 * 109.47364 * 330.00477 * 14 13 10 35 35 H 1.08995 * 109.46581 * 215.00057 * 15 13 10 36 36 H 1.08997 * 109.46588 * 335.00024 * 15 13 10 37 37 H 0.97005 * 119.99635 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9153 1.0197 0.0000 4 16 2.1878 -0.9465 1.4337 5 6 3.7661 -1.4027 0.6061 6 6 3.3351 -1.5811 -0.8642 7 6 2.0774 -0.7921 -1.2052 8 1 2.3065 -0.0945 -2.0108 9 7 1.0454 -1.7228 -1.6687 10 16 0.8954 -2.0552 -3.2840 11 8 -0.1559 -3.0039 -3.4025 12 8 0.8897 -0.8015 -3.9529 13 7 2.2804 -2.8306 -3.7557 14 6 3.4239 -2.0557 -4.2437 15 6 2.3623 -4.2917 -3.6850 16 6 2.0047 -4.8803 -5.0255 17 1 1.7424 -4.2310 -5.8477 18 6 2.0126 -6.2476 -5.2022 19 7 2.3316 -7.0382 -4.2007 20 14 1.5688 -6.9774 -6.8635 21 1 2.5154 -6.4772 -7.8926 22 1 1.6531 -8.4582 -6.7921 23 1 0.1857 -6.5766 -7.2266 24 1 -0.3634 -1.0276 0.0125 25 1 -0.3633 0.5246 0.8836 26 1 -0.3634 0.5029 -0.8962 27 1 4.1590 -2.3358 1.0100 28 1 4.5006 -0.6028 0.6997 29 1 3.1494 -2.6387 -1.0514 30 1 4.1469 -1.2468 -1.5103 31 1 0.4500 -2.1444 -1.0294 32 1 4.0714 -1.7967 -3.4060 33 1 3.9840 -2.6500 -4.9657 34 1 3.0671 -1.1439 -4.7226 35 1 3.3771 -4.5862 -3.4179 36 1 1.6668 -4.6584 -2.9300 37 1 2.3368 -8.0003 -4.3250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592109450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:25 Heat of formation + Delta-G solvation = -72.119489 kcal Electronic energy + Delta-G solvation = -20969.911840 eV Core-core repulsion = 17807.421788 eV Total energy + Delta-G solvation = -3162.490053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.06178 -36.59305 -35.53860 -35.21103 -32.51771 -32.33513 -31.45839 -27.82144 -26.26160 -25.10713 -23.53249 -22.31945 -20.40994 -19.23926 -17.54335 -16.84011 -16.61498 -16.40910 -16.08263 -15.18369 -14.86722 -14.46920 -14.28585 -13.93856 -13.58155 -13.38172 -13.22972 -12.59003 -12.35197 -12.19164 -12.11193 -11.66625 -11.61490 -11.54216 -11.41242 -11.20270 -11.08819 -11.05615 -10.97339 -10.74337 -10.52820 -10.07498 -9.99632 -9.77849 -9.50088 -8.45970 -8.10736 -7.83673 -6.08233 -4.12410 1.17606 1.69347 2.15408 3.32497 3.36351 3.39826 3.43461 4.04485 4.21463 4.43343 4.60824 4.71444 4.78531 4.89754 5.05244 5.08664 5.23570 5.27365 5.46562 5.52954 5.56932 5.60968 5.66651 5.82193 5.97896 6.04211 6.14145 6.27052 6.51438 7.05206 7.22485 7.38527 7.57521 7.88951 8.18145 8.89658 9.53028 11.00269 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.005068 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.137101 B = 5523.696097 C = 5899.441984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.037 4.037 3 H 0.104 0.896 4 S -0.299 6.299 5 C -0.060 4.060 6 C -0.153 4.153 7 C 0.154 3.846 8 H 0.100 0.900 9 N -1.126 6.126 10 S 2.780 3.220 11 O -0.962 6.962 12 O -0.998 6.998 13 N -0.995 5.995 14 C 0.092 3.908 15 C 0.259 3.741 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.416 0.584 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.124 13.747 9.383 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 H 0.123 0.877 4 S -0.073 6.073 5 C -0.209 4.209 6 C -0.194 4.194 7 C 0.043 3.957 8 H 0.118 0.882 9 N -0.886 5.886 10 S 2.787 3.213 11 O -0.945 6.945 12 O -0.982 6.982 13 N -0.838 5.838 14 C -0.055 4.055 15 C 0.137 3.863 16 C -0.570 4.570 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.252 0.748 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.076 13.597 9.858 16.923 hybrid contribution 0.462 -0.647 -1.434 1.639 sum 2.538 12.950 8.424 15.656 Atomic orbital electron populations 1.21657 0.91374 1.03436 1.02653 1.24132 1.00052 1.00387 0.92095 0.87748 1.88050 1.23155 1.69761 1.26338 1.24089 0.95748 1.04990 0.96034 1.22781 0.97484 1.03906 0.95195 1.21210 0.86830 0.90176 0.97437 0.88214 1.56573 1.45386 1.57885 1.28737 1.02013 0.73721 0.72850 0.72699 1.93654 1.53918 1.62012 1.84945 1.93521 1.87152 1.44594 1.72925 1.57586 1.30628 1.17622 1.77949 1.21417 0.89165 0.95895 0.98996 1.19034 0.98196 0.71378 0.97673 1.21450 1.46740 0.91755 0.97053 0.92263 1.24923 0.94965 0.96931 0.97133 1.69909 1.48404 1.04164 1.30989 0.86578 0.79310 0.77813 0.83877 1.20197 1.21163 1.19991 0.91065 0.91770 0.90644 0.87606 0.89258 0.88402 0.89672 0.74820 0.94319 0.90335 0.91639 0.94746 0.94440 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 8.65 37.16 0.32 -0.99 16 2 C -0.04 -0.37 3.87 -26.07 -0.10 -0.47 16 3 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 4 S -0.30 -3.38 22.75 -107.50 -2.45 -5.82 16 5 C -0.06 -0.57 7.46 37.82 0.28 -0.29 16 6 C -0.15 -1.63 5.65 -26.41 -0.15 -1.78 16 7 C 0.15 1.75 3.16 -67.62 -0.21 1.54 16 8 H 0.10 1.10 7.45 -51.92 -0.39 0.71 16 9 N -1.13 -15.70 4.43 -4.62 -0.02 -15.72 16 10 S 2.78 52.16 6.08 -107.50 -0.65 51.51 16 11 O -0.96 -22.43 17.11 -57.17 -0.98 -23.41 16 12 O -1.00 -19.57 16.05 -57.17 -0.92 -20.49 16 13 N -0.99 -19.35 3.23 -123.05 -0.40 -19.75 16 14 C 0.09 1.45 10.68 59.85 0.64 2.09 16 15 C 0.26 6.25 5.08 -5.19 -0.03 6.22 16 16 C -0.53 -14.65 9.38 -34.44 -0.32 -14.97 16 17 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.90 -25.85 13.29 55.43 0.74 -25.12 16 20 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H 0.07 0.74 6.19 -51.93 -0.32 0.42 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.10 1.24 7.79 -51.93 -0.40 0.84 16 30 H 0.08 0.78 6.77 -51.93 -0.35 0.42 16 31 H 0.42 5.46 6.88 -34.47 -0.24 5.22 16 32 H 0.04 0.48 6.21 -51.93 -0.32 0.16 16 33 H 0.08 1.29 8.07 -51.93 -0.42 0.88 16 34 H 0.06 0.99 7.02 -51.93 -0.36 0.62 16 35 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 36 H 0.04 0.97 7.61 -51.93 -0.40 0.57 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 LS Contribution 322.10 15.07 4.85 4.85 Total: -1.00 -33.09 322.10 -9.79 -42.89 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.28 Total: 1.37 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 0.33 Total: -6.98 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.32 Total: -60.58 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -1.90 Total: -43.90 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 48.79 SS G_CDS: -3.10 Total: 45.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.09 -9.79 -42.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592109450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.234 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds