Wall clock time and date at job start Tue Mar 31 2020 03:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.69926 * 2 1 4 4 S 1.83957 * 110.95040 * 123.43108 * 2 1 3 5 5 C 1.83962 * 94.80484 * 152.84393 * 4 2 1 6 6 C 1.54258 * 102.57887 * 325.50162 * 5 4 2 7 7 C 1.52338 * 112.58835 * 24.53138 * 6 5 4 8 8 H 1.09009 * 108.86565 * 120.81506 * 7 6 5 9 9 N 1.46490 * 108.86910 * 239.17462 * 7 6 5 10 10 S 1.65596 * 120.00310 * 268.07903 * 9 7 6 11 11 O 1.42105 * 106.40342 * 178.54079 * 10 9 7 12 12 O 1.42097 * 106.40322 * 311.45713 * 10 9 7 13 13 N 1.65598 * 107.21872 * 64.99948 * 10 9 7 14 14 C 1.46497 * 120.00042 * 269.99784 * 13 10 9 15 15 C 1.46507 * 119.99882 * 90.00253 * 13 10 9 16 16 C 1.50706 * 109.47040 * 94.99991 * 15 13 10 17 17 H 1.08000 * 119.99651 * 359.97438 * 16 15 13 18 18 C 1.37872 * 119.99772 * 179.97438 * 16 15 13 19 19 N 1.31518 * 119.99767 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00167 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46711 * 60.00425 * 20 18 16 22 22 H 1.48496 * 109.47090 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47008 * 300.00271 * 20 18 16 24 24 H 1.09007 * 109.47132 * 180.69829 * 1 2 3 25 25 H 1.08994 * 109.47212 * 300.69640 * 1 2 3 26 26 H 1.09002 * 109.47417 * 60.70073 * 1 2 3 27 27 H 1.09004 * 110.78210 * 207.23315 * 5 4 2 28 28 H 1.08999 * 110.95259 * 83.85073 * 5 4 2 29 29 H 1.09003 * 108.87369 * 263.70904 * 6 5 4 30 30 H 1.09001 * 108.75368 * 145.27058 * 6 5 4 31 31 H 0.97003 * 119.99742 * 88.07556 * 9 7 6 32 32 H 1.09004 * 109.46972 * 90.00396 * 14 13 10 33 33 H 1.09004 * 109.47132 * 209.99701 * 14 13 10 34 34 H 1.08995 * 109.47364 * 330.00477 * 14 13 10 35 35 H 1.08995 * 109.46581 * 215.00057 * 15 13 10 36 36 H 1.08997 * 109.46588 * 335.00024 * 15 13 10 37 37 H 0.97005 * 119.99635 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9153 1.0197 0.0000 4 16 2.1878 -0.9465 1.4337 5 6 3.7661 -1.4027 0.6061 6 6 3.3351 -1.5811 -0.8642 7 6 2.0774 -0.7921 -1.2052 8 1 2.3065 -0.0945 -2.0108 9 7 1.0454 -1.7228 -1.6687 10 16 0.8954 -2.0552 -3.2840 11 8 -0.1559 -3.0039 -3.4025 12 8 0.8897 -0.8015 -3.9529 13 7 2.2804 -2.8306 -3.7557 14 6 3.4239 -2.0557 -4.2437 15 6 2.3623 -4.2917 -3.6850 16 6 2.0047 -4.8803 -5.0255 17 1 1.7424 -4.2310 -5.8477 18 6 2.0126 -6.2476 -5.2022 19 7 2.3316 -7.0382 -4.2007 20 14 1.5688 -6.9774 -6.8635 21 1 2.5154 -6.4772 -7.8926 22 1 1.6531 -8.4582 -6.7921 23 1 0.1857 -6.5766 -7.2266 24 1 -0.3634 -1.0276 0.0125 25 1 -0.3633 0.5246 0.8836 26 1 -0.3634 0.5029 -0.8962 27 1 4.1590 -2.3358 1.0100 28 1 4.5006 -0.6028 0.6997 29 1 3.1494 -2.6387 -1.0514 30 1 4.1469 -1.2468 -1.5103 31 1 0.4500 -2.1444 -1.0294 32 1 4.0714 -1.7967 -3.4060 33 1 3.9840 -2.6500 -4.9657 34 1 3.0671 -1.1439 -4.7226 35 1 3.3771 -4.5862 -3.4179 36 1 1.6668 -4.6584 -2.9300 37 1 2.3368 -8.0003 -4.3250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592109450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:24 Heat of formation + Delta-G solvation = -95.924435 kcal Electronic energy + Delta-G solvation = -20970.944100 eV Core-core repulsion = 17807.421788 eV Total energy + Delta-G solvation = -3163.522312 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.05478 -38.17930 -37.18922 -36.84738 -34.50084 -33.27004 -32.43853 -29.65046 -27.15353 -26.74040 -24.35780 -24.18271 -21.37655 -20.53095 -19.09271 -18.42056 -18.28453 -17.57731 -17.29509 -16.79384 -16.15405 -15.83338 -15.25451 -15.14118 -14.97931 -14.66532 -14.19529 -14.01756 -13.94025 -13.55108 -13.31568 -13.14269 -13.03263 -12.95574 -12.91896 -12.83469 -12.47015 -12.36192 -12.28091 -11.98844 -11.94841 -11.86647 -11.69110 -10.86219 -10.62721 -10.56555 -9.75314 -8.69937 -8.19804 -6.31377 -0.31586 0.88892 1.36907 1.39439 1.42797 1.49742 2.02790 2.40685 2.64973 3.11494 3.29930 3.46867 3.78810 3.87046 4.01187 4.13166 4.17535 4.25279 4.42147 4.55735 4.67605 4.79268 4.82598 4.85213 4.89578 5.05581 5.14398 5.18848 5.23301 5.27060 5.48368 5.71143 5.86272 6.08096 6.13941 6.77084 7.37582 8.87240 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.005068 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.137101 B = 5523.696097 C = 5899.441984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.025 4.025 3 H 0.129 0.871 4 S -0.342 6.342 5 C -0.048 4.048 6 C -0.154 4.154 7 C 0.146 3.854 8 H 0.111 0.889 9 N -1.112 6.112 10 S 2.798 3.202 11 O -1.013 7.013 12 O -1.006 7.006 13 N -1.000 6.000 14 C 0.084 3.916 15 C 0.276 3.724 16 C -0.550 4.550 17 H 0.051 0.949 18 C 0.013 3.987 19 N -0.924 5.924 20 Si 0.953 3.047 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.279 1.279 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.420 0.580 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.014 0.986 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.191 15.161 9.350 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 H 0.147 0.853 4 S -0.116 6.116 5 C -0.196 4.196 6 C -0.195 4.195 7 C 0.037 3.963 8 H 0.129 0.871 9 N -0.876 5.876 10 S 2.806 3.194 11 O -0.997 6.997 12 O -0.989 6.989 13 N -0.841 5.841 14 C -0.061 4.061 15 C 0.153 3.847 16 C -0.590 4.590 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.564 5.564 20 Si 0.778 3.222 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.204 1.204 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.125 0.875 28 H 0.132 0.868 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.258 0.742 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.032 0.968 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.163 15.034 9.818 18.232 hybrid contribution 0.148 -1.002 -1.359 1.695 sum 3.310 14.032 8.459 16.716 Atomic orbital electron populations 1.21695 0.91482 1.02989 1.03348 1.24172 0.99964 1.00997 0.90333 0.85302 1.88249 1.25149 1.70482 1.27742 1.24143 0.94907 1.05976 0.94553 1.22763 0.97730 1.02394 0.96568 1.21543 0.86345 0.89958 0.98437 0.87112 1.56156 1.46254 1.58257 1.26885 1.01222 0.72710 0.71996 0.73476 1.93581 1.56226 1.63688 1.86222 1.93504 1.87109 1.44374 1.73905 1.57426 1.31870 1.15932 1.78914 1.21668 0.88509 0.95425 1.00476 1.18545 0.96948 0.73867 0.95375 1.21837 1.46624 0.92219 0.98278 0.93062 1.25711 0.94961 0.97468 1.00505 1.69999 1.49242 1.04436 1.32677 0.85682 0.78845 0.77453 0.80186 1.18784 1.20241 1.20443 0.92119 0.90597 0.90426 0.87485 0.86752 0.90627 0.87522 0.74211 0.90444 0.91269 0.90655 0.95131 0.96825 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.65 71.98 0.62 -1.86 16 2 C -0.02 -0.44 3.87 31.02 0.12 -0.32 16 3 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 4 S -0.34 -7.15 22.75 -56.49 -1.28 -8.43 16 5 C -0.05 -0.78 7.46 72.41 0.54 -0.24 16 6 C -0.15 -2.90 5.65 30.80 0.17 -2.73 16 7 C 0.15 3.00 3.16 45.20 0.14 3.14 16 8 H 0.11 2.08 7.45 -2.38 -0.02 2.07 16 9 N -1.11 -30.08 4.43 -168.53 -0.75 -30.83 16 10 S 2.80 104.23 6.08 -56.49 -0.34 103.89 16 11 O -1.01 -48.36 17.11 -128.00 -2.19 -50.55 16 12 O -1.01 -38.17 16.05 -128.00 -2.05 -40.22 16 13 N -1.00 -38.45 3.23 -543.21 -1.75 -40.20 16 14 C 0.08 2.52 10.68 127.77 1.36 3.88 16 15 C 0.28 13.51 5.08 85.63 0.43 13.95 16 16 C -0.55 -30.71 9.38 25.60 0.24 -30.47 16 17 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 18 C 0.01 0.74 5.46 84.65 0.46 1.20 16 19 N -0.92 -53.80 13.29 21.45 0.28 -53.52 16 20 Si 0.95 44.38 29.54 68.60 2.03 46.40 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H 0.06 1.22 6.19 -2.38 -0.01 1.21 16 25 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.82 7.79 -2.39 -0.02 1.80 16 30 H 0.11 1.55 6.77 -2.39 -0.02 1.53 16 31 H 0.42 10.99 6.88 -96.74 -0.67 10.32 16 32 H 0.08 1.69 6.21 -2.38 -0.01 1.67 16 33 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 34 H 0.07 2.11 7.02 -2.39 -0.02 2.09 16 35 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 36 H 0.01 0.73 7.61 -2.39 -0.02 0.71 16 37 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -71.21 322.10 -1.55 -72.76 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.41 Total: 14.16 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 4.10 Total: -13.45 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -2.21 Total: -124.55 kcal Atomic # 8 Polarization: -86.52 SS G_CDS: -4.24 Total: -90.77 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 97.08 SS G_CDS: -1.63 Total: 95.45 kcal Total: -71.21 -1.55 -72.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592109450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.167 kcal (2) G-P(sol) polarization free energy of solvation -71.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds