Wall clock time and date at job start Tue Mar 31 2020 03:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48504 * 109.46981 * 239.99821 * 3 2 1 5 5 H 1.48502 * 109.46937 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47231 * 119.99783 * 3 2 1 7 7 C 1.38817 * 119.99466 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99828 * 197.36591 * 7 2 1 9 9 N 1.36935 * 120.00330 * 17.37129 * 7 2 1 10 10 C 1.46921 * 120.62952 * 207.68122 * 9 7 2 11 11 C 1.53188 * 108.77710 * 233.58345 * 10 9 7 12 12 C 1.53036 * 109.31656 * 305.37160 * 11 10 9 13 13 N 1.46901 * 109.46335 * 181.38602 * 12 11 10 14 14 C 1.46896 * 111.00366 * 155.00092 * 13 12 11 15 15 H 1.08997 * 108.97769 * 33.92655 * 14 13 12 16 16 C 1.52540 * 109.04366 * 274.99800 * 14 13 12 17 17 C 1.53806 * 111.63428 * 293.50208 * 16 14 13 18 18 C 1.51634 * 107.04226 * 302.47512 * 17 16 14 19 19 H 1.08999 * 110.50500 * 304.75314 * 18 17 16 20 20 C 1.53076 * 116.60976 * 176.27733 * 18 17 16 21 21 N 1.49070 * 103.41713 * 204.05143 * 20 18 17 22 22 C 1.48653 * 108.29618 * 24.35685 * 21 20 18 23 23 C 1.52327 * 105.83753 * 3.19937 * 22 21 20 24 24 H 1.09000 * 109.86828 * 87.66765 * 23 22 21 25 25 C 1.51448 * 117.74197 * 214.40902 * 23 22 21 26 26 C 1.53041 * 109.54131 * 61.35942 * 12 11 10 27 27 C 1.46930 * 120.63003 * 27.66196 * 9 7 2 28 28 H 0.96997 * 120.00010 * 0.02562 * 1 2 3 29 29 H 1.09011 * 109.58509 * 113.80006 * 10 9 7 30 30 H 1.08998 * 109.70734 * 353.44500 * 10 9 7 31 31 H 1.09004 * 109.49904 * 185.41298 * 11 10 9 32 32 H 1.09007 * 109.49673 * 65.32031 * 11 10 9 33 33 H 1.09005 * 109.45976 * 301.35294 * 12 11 10 34 34 H 1.00897 * 110.99958 * 31.04041 * 13 12 11 35 35 H 1.08991 * 109.03239 * 172.96570 * 16 14 13 36 36 H 1.09000 * 109.03188 * 54.03356 * 16 14 13 37 37 H 1.08994 * 109.94242 * 61.86200 * 17 16 14 38 38 H 1.09007 * 109.93532 * 183.09855 * 17 16 14 39 39 H 1.08995 * 110.63487 * 322.53567 * 20 18 17 40 40 H 1.08996 * 110.63191 * 85.57300 * 20 18 17 41 41 H 1.00902 * 111.00098 * 146.43882 * 21 20 18 42 42 H 1.09009 * 110.17417 * 244.11316 * 22 21 20 43 43 H 1.08996 * 110.17925 * 122.30049 * 22 21 20 44 44 H 1.08998 * 109.93162 * 298.42820 * 25 23 22 45 45 H 1.09001 * 109.93328 * 59.57339 * 25 23 22 46 46 H 1.09003 * 109.49161 * 58.58916 * 26 12 11 47 47 H 1.08996 * 109.49586 * 178.68582 * 26 12 11 48 48 H 1.08997 * 109.58247 * 246.20225 * 27 9 7 49 49 H 1.09003 * 109.58497 * 6.62241 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0533 -1.2235 0.2797 9 7 1.3723 -2.3612 -0.3530 10 6 1.8192 -3.6547 0.1817 11 6 2.0741 -4.6103 -0.9881 12 6 0.8184 -4.6903 -1.8593 13 7 1.0480 -5.6314 -2.9637 14 6 -0.2200 -6.1900 -3.4516 15 1 -0.9976 -5.4309 -3.3671 16 6 -0.5998 -7.3897 -2.5894 17 6 0.3910 -8.5525 -2.7677 18 6 0.4026 -8.9043 -4.2426 19 1 -0.6068 -9.1231 -4.5909 20 6 1.3908 -9.9881 -4.6811 21 7 1.6084 -9.6934 -6.1261 22 6 1.3126 -8.2554 -6.3589 23 6 0.9867 -7.6712 -4.9903 24 1 1.9029 -7.3405 -4.5010 25 6 -0.0573 -6.5762 -4.9217 26 6 0.5005 -3.3052 -2.4275 27 6 0.2277 -2.3349 -1.2739 28 1 -0.4850 0.8400 -0.0004 29 1 1.0467 -4.0686 0.8300 30 1 2.7393 -3.5193 0.7501 31 1 2.3133 -5.6015 -0.6027 32 1 2.9079 -4.2405 -1.5849 33 1 -0.0208 -5.0364 -1.2559 34 1 1.6837 -6.3646 -2.6876 35 1 -1.5978 -7.7268 -2.8694 36 1 -0.6078 -7.0867 -1.5424 37 1 1.3873 -8.2437 -2.4513 38 1 0.0640 -9.4124 -2.1830 39 1 2.3253 -9.9028 -4.1268 40 1 0.9558 -10.9792 -4.5526 41 1 2.5525 -9.9177 -6.4027 42 1 0.4567 -8.1507 -7.0258 43 1 2.1837 -7.7562 -6.7831 44 1 0.2713 -5.7127 -5.5001 45 1 -1.0073 -6.9437 -5.3097 46 1 1.3492 -2.9478 -3.0106 47 1 -0.3802 -3.3676 -3.0665 48 1 -0.6744 -2.6411 -0.7444 49 1 0.0985 -1.3266 -1.6673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592471076.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:13 Heat of formation + Delta-G solvation = -4.386027 kcal Electronic energy + Delta-G solvation = -24980.896033 eV Core-core repulsion = 21748.364247 eV Total energy + Delta-G solvation = -3232.531786 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34936 -39.44764 -37.39796 -35.17408 -33.40442 -32.43449 -31.62927 -30.91391 -29.21393 -28.02608 -26.37376 -24.18292 -23.81690 -23.22299 -21.86636 -21.62604 -20.73290 -20.12312 -18.70815 -17.18689 -17.01829 -16.57312 -16.33985 -15.82791 -15.65571 -15.33623 -15.19740 -15.03151 -14.73563 -14.40987 -14.08170 -13.94808 -13.85307 -13.45380 -13.21678 -13.13166 -12.95439 -12.77321 -12.66712 -12.56202 -12.28214 -12.23871 -12.05934 -11.96519 -11.87832 -11.77780 -11.45600 -11.34917 -11.10006 -11.05685 -10.77005 -10.54387 -9.38095 -9.24019 -8.70583 -7.88424 -5.33338 1.45709 1.48858 1.55448 2.50835 3.17579 3.29373 3.31335 3.46175 3.68356 3.74593 3.84003 3.98761 4.08575 4.14057 4.19394 4.34444 4.42783 4.45589 4.54213 4.56120 4.62430 4.67530 4.71097 4.73244 4.77840 4.85524 4.90176 4.91254 5.00408 5.00945 5.07604 5.11256 5.12727 5.21242 5.25975 5.28856 5.31751 5.38144 5.44849 5.52416 5.55971 5.63906 5.75568 5.85265 6.22387 6.38122 6.47579 6.60919 7.13845 7.85495 8.37185 9.18114 Molecular weight = 293.22amu Principal moments of inertia in cm(-1) A = 0.033313 B = 0.003206 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.305392 B = 8731.215853 C = 8852.981236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.265 4.265 8 H 0.066 0.934 9 N -0.610 5.610 10 C 0.143 3.857 11 C -0.119 4.119 12 C 0.109 3.891 13 N -0.677 5.677 14 C 0.088 3.912 15 H 0.060 0.940 16 C -0.143 4.143 17 C -0.098 4.098 18 C -0.095 4.095 19 H 0.077 0.923 20 C 0.053 3.947 21 N -0.694 5.694 22 C 0.054 3.946 23 C -0.108 4.108 24 H 0.071 0.929 25 C -0.082 4.082 26 C -0.108 4.108 27 C 0.179 3.821 28 H 0.250 0.750 29 H 0.012 0.988 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.342 0.658 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.344 0.656 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.046 0.954 47 H 0.054 0.946 48 H -0.008 1.008 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 -20.590 -9.951 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.334 5.334 10 C 0.017 3.983 11 C -0.158 4.158 12 C -0.001 4.001 13 N -0.310 5.310 14 C -0.022 4.022 15 H 0.079 0.921 16 C -0.182 4.182 17 C -0.136 4.136 18 C -0.114 4.114 19 H 0.096 0.904 20 C -0.076 4.076 21 N -0.323 5.323 22 C -0.075 4.075 23 C -0.127 4.127 24 H 0.089 0.911 25 C -0.121 4.121 26 C -0.148 4.148 27 C 0.053 3.947 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.163 0.837 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.160 0.840 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.010 0.990 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.887 -20.222 -10.647 22.871 hybrid contribution 0.588 1.200 1.379 1.921 sum 1.475 -19.022 -9.268 21.211 Atomic orbital electron populations 1.70187 1.06713 1.25922 1.55359 1.25807 0.96054 1.01563 1.01267 0.85336 0.77589 0.79143 0.78364 1.20489 1.21959 1.19963 1.19502 0.93013 0.86214 1.40821 0.91589 1.44318 1.35904 1.02276 1.50918 1.21012 0.97232 0.85945 0.94098 1.22019 0.97408 0.99331 0.97063 1.21178 0.96321 0.92212 0.90372 1.60681 1.13257 1.20300 1.36756 1.21457 0.91193 0.94713 0.94813 0.92148 1.22138 1.00406 0.96050 0.99566 1.21271 0.99265 0.97652 0.95440 1.21995 0.99467 0.94500 0.95483 0.90425 1.22601 0.98167 0.99035 0.87793 1.62615 1.31951 1.18940 1.18792 1.22294 1.01098 0.87529 0.96573 1.21974 0.98935 0.95407 0.96418 0.91069 1.21014 0.98460 0.97876 0.94711 1.21938 1.00021 0.95272 0.97574 1.20567 0.87571 0.97622 0.88937 0.94111 0.97032 0.92610 0.90235 0.92379 0.95180 0.83744 0.91047 0.92905 0.91894 0.90610 0.93100 0.90009 0.84048 0.91152 0.92313 0.92081 0.91138 0.93483 0.92728 0.99014 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.52 11.19 21.65 0.24 -56.27 16 2 C -0.05 -2.95 4.91 84.86 0.42 -2.53 16 3 Si 0.97 45.62 29.59 68.60 2.03 47.65 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.27 -14.96 9.59 84.04 0.81 -14.15 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -31.50 2.99 -699.10 -2.09 -33.60 16 10 C 0.14 5.98 6.51 86.36 0.56 6.54 16 11 C -0.12 -3.92 5.36 30.67 0.16 -3.76 16 12 C 0.11 3.53 2.22 44.94 0.10 3.63 16 13 N -0.68 -17.36 5.52 -470.35 -2.60 -19.95 16 14 C 0.09 1.98 2.56 44.72 0.11 2.09 16 15 H 0.06 1.58 7.06 -2.39 -0.02 1.57 16 16 C -0.14 -2.71 5.34 30.71 0.16 -2.55 16 17 C -0.10 -1.53 5.45 30.42 0.17 -1.37 16 18 C -0.10 -1.49 2.50 -10.32 -0.03 -1.51 16 19 H 0.08 1.32 8.02 -2.39 -0.02 1.30 16 20 C 0.05 0.76 7.22 85.91 0.62 1.38 16 21 N -0.69 -10.88 7.48 -505.38 -3.78 -14.66 16 22 C 0.05 0.89 7.31 85.74 0.63 1.52 16 23 C -0.11 -1.87 2.21 -10.63 -0.02 -1.90 16 24 H 0.07 1.39 6.62 -2.39 -0.02 1.37 16 25 C -0.08 -1.61 5.35 30.04 0.16 -1.45 16 26 C -0.11 -4.29 5.57 30.67 0.17 -4.12 16 27 C 0.18 8.97 5.31 86.36 0.46 9.43 16 28 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 29 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.06 2.27 7.94 -2.39 -0.02 2.25 16 31 H 0.08 2.10 8.10 -2.38 -0.02 2.08 16 32 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.03 1.03 7.05 -2.38 -0.02 1.01 16 34 H 0.34 7.80 5.49 -89.70 -0.49 7.30 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 1.14 7.29 -2.39 -0.02 1.12 16 37 H 0.06 1.00 6.59 -2.39 -0.02 0.99 16 38 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.34 4.43 8.93 -89.69 -0.80 3.63 16 42 H 0.07 1.22 8.09 -2.38 -0.02 1.20 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 1.27 8.04 -2.39 -0.02 1.25 16 46 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.05 2.02 7.40 -2.39 -0.02 2.00 16 48 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 49 H 0.05 2.95 6.04 -2.39 -0.01 2.93 16 Total: -1.00 -62.77 355.76 -2.09 -64.85 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -0.37 Total: 20.73 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 4.48 Total: -8.75 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -8.23 Total: -124.48 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -62.77 -2.09 -64.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592471076.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.468 kcal (2) G-P(sol) polarization free energy of solvation -62.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds